Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00827 ATGGAAGGCCAGCAGGTTTTAAAGAATTTGGATTCTCTCTGGTTCTTCGCCACCGTATTCTCCAACAAAACGCCGCCGTCTCAGTCTCCAGCGCCACCGATCGTCGAAAAACCCTCTCAAAACAACTTCGTTGAGTCTCCCGGAGAAGAAATTGTGACACCCATTACTCAAAATGAGCAAAATGTTGGTAATGAGAAGAAGATTGAAAATAATGGTGGGTTTAGGATAAAAACAGAGGAGAAAGAAGAGAAGATGAGAAAAAACAGAGGAAGGAGATGTTGGGGTTTGGAGAAGAGGAGAAAAATTGTTGGAGAGATGGATCTGAGTTATGTTGTGAAGGAGATTTGTGAATGTTGGTTGTTTGAAGAGATGAGAATTGGAGGTGGGAATCAGTACCAGAGGAAGAAGAAGACGAAGAAGATGCCTCCATTTGAAGATAGTATAGCCATGAAAGAACACATCAGATCCTGGGCTTATGCAGTGGCTTGCACTAACAATTCGCCGGGGTGCAGAGAGGCAACGATGTCGGAGGCGCCGCCGAGACGACTAAGAGGTCACAAAGCCATTGCCACATGCTGCATCGCCTCGAATGACCGTCCTGGCCTAGTCGCTACTTCAGGCGAGGTAGAGTTTCTTGTAGCCCCAAAGCGTCTTTTCTGGCTGCCGCCGACGATAGTGGTGATGTTAAGGTCAGCATCTTTAGCTTACCGAGATTTCTTTTCTTGGGATTTGAACTCAAATGAGCATTCAGATAATTGGAAGCCTCACCTTTCCTATCTGACTGCTGTTTCACAATTCCGGCATTATACAGTTATTACAGGAGGACTTGATTCAAAGCTCATTATGTGGGACTTTTCCAGAGGACGCCCCATCAAAGTACTTGATTTTGATATCCCTGACAACCACCCTTCCAGCAACTCGGGACAATGTTTCAATCCTGCATTTGTTCATGCAATAGCAGTTCCTGAAGTTAATATGCTGGACAAAACGGGCCAGATATGTGTCGTTGCAAGGGGCGATGGTATTGTTCATGTGATTGATATTGAATCTGAGAAATCGAAGATTCCATCAAAATCAGGTAAAAGAATACAAACAAGATCTAAGGGAGTTACAGCTGCTTGTGATATGGATAACCAAGAGCAAACTAGAAGAAAGAGGTTATATTTGGATTACACTGTTGGTGGACATTCTGCTGCTGTGTCCTGTGTGGCATTTTCTCAATTTGGAGAGAAAGGGAAGTTCATAGTTTCTGGTGGGAATGATAAATGCATAAAGCTTTGGAATTGGTGTGGAGTTCCTAATGCTGGGGAAACTGGCAGCAGCAACCACGATATTCTTCATTTGAACATCAATCTGAGCAAAAAGGTGAATTGGCTTTGTACTACTCCATCTGAAACAGAAAACCTTATCGTTTGTGATACCAGCAAAGTAGTGAAGAATCAGGGCTGTCCGAAGAAAGGGCAAGTGAGGAACAGGATGATGGTTTCTGATGTTCCCATTTGCCACACTTGTGGTGAGCCAGTCGGAGTTGATGGCAATGGAGAGGTTTTCGTTGCTTGCAATGAGTGCCATTTTCCTATTTGTAGAGTCTGCGTTCAGTATGATATTAAGGAAGGCCGAAATGTTTGCTTGCGGTGTGGCTCTCCATTTGACGAGAACGTGCTGATGGATGCTGATACGAAGAGATCAGGAGATCGAAACACAATGGCATCTCATCTTAGTCATTCTCAGGACGTTGGAGTTCATGCTAGACATATCAGTAGTGTGTCGACAGTGGATAGTGAATTGAACGATGAATCTGGGAACCCAATTTGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAGAATAAAAAGAAACGGCCAACTGTGAAGACTGAACAGGAAGCTGAAATACCTCCCCATCAACAAATGGAAGAGAAACAGATTTCAGATGAGGCTGCGGTTACACACTCATTTTCTTCAGTTTATCCAATTCCGTCCAGCAGATTAACACCATACAGAATTGTGATAATCATGCGATTGATCATTCTAGCTCTTTTCTTTCAGTATCGAATAACAAATCCTGTTGATAGTGCTTTTGGTCTATGGCTCACTTCTATCATATGCGAAATCTGGTTTGAAAGAGAGGGAGAACCTTCCCAGCTTGCTGCTGTGGATTTTTTTGTGAGTACTGTTGATCCATTGAAAGAACCTCCACTAATCACTGCCAATACCGTGCTTTCAATCCTTGCTGTGGACTATCCTGTCGATAAAGTCTCCTGCTATGTGTCTGACGATGGTGCAGCTATGCTTACATTTGAGTCTCTAGTTGAAACAGCCGACTTTGCGAGAAAGTGGGTTCCATTCTGCAAGAAATTCTCCATTGAACCCCGAGCTCCTGAGTTTTACTTCTCTCAGAAAATAGACTATTTGAAGGATAAAGTGCAACCTTCTTTTGTCAAGGAACGTAGAGCAATGAAAAGAGCTTATGAAGAGTTTAAAGTACGAGTCAATGCTTTGGTAGCAAAGGCTCAGAAAACGCCAGATGAAGGCTGGTCCATGCAAGACGGAACAGCTTGGCCAGGAAATAATCCACGCGACCACCCTGGAATGATTCAGTGTTCCATCAACACGCTTACTTTGTCTTTCACTAGAAAAATTGAATCAAAATGTTCAATGACCGAGGATGGATTGTTTCAGGTTTTTCTTGGAAATACTGGCGCCCATGACATAGAGGGTAATGAACTTCCTCGACTAGTCTATGTCTCCAGAGAAAAGAGGCCTGGTTATCAACATCACAAAAAAGCTGGTGCTGAAAATGCTCTGGTGAGAGTATCTGCAGTCCTCACAAACGCCCCCTTCATTCTCAACCTTGACTGTGATCACTATGTTAACAATAGCCAAGCTATACGTGAGGCAATGTGTTTCTTGATGGACCCACAAGTAGGCCGAGACGTATGCTATGTTCAATTTCCTCAGAGGTTTGATGGCATTGATCGAAGTGATCGATATGCCAATCGCAACACAGTTTTCTTTGATGTGAACATGAAAGGATTGGATGGCATCCAGGGACCAGTATACGTGGGTACAGGTTGTGTTTTCAATAGACAGGCTCTTTATGGCTACGGACCTCCTACTCTGCCTAGCTTATCTAAGACATCCTCGTCATCCTGCTCTTGGTGTGGCTGCTGCTCGTGCTGCTGTCCTTCCAAGAAGACATCAAAAGATCCGACTGAGATTCAGAGAGATGCAAAAAGAGAAGAGCTTGATGCTGCAATCTTTAACCTCAGGGAACTAGATAACTATGATGAGTACGAGAGGTCAATGCTAATTTCTCAATTGAGCTTTGAGAAAACTTTTGGCTTATCTTCTGTATTTATTGAGTCTACACTAATGGAAAATGGAGGAGTTGCAGAATCTGCAAATCCATCGACTTTGATCAAAGAAGCAATTCATGTCATCGGCTGTGGTTATGAAGAGAAGACTGCCTGGGGAAAAGAGATTGGTTGGATATACGGTTCAGTCACTGAGGATATCTTAACGGGTTTCAAGATGCATTGCCGAGGATGGAGGTCCATCTACTGCATGCCTGCGAGGCCAGCATTCAAAGGATCAGCACCAATTAACCTTTCCGATCGTCTGCACCAAGTTCTTCGATGGGCACTTGGATCCGTTGAGATTTTTCTCAGTAGACATTGTCCATTATGGTATGGATTCGCAGGCGGTCGGCTCAAATGGCTCCAAAGAATGGCATACATAAACACCATTGTCTATCCGTTCACCTCCCTCCCTCTCATTGCCTACTGCTCATTGCCTGCAATCTGCCTGCTGACAGGAAAATTTATCATACCAACGCTCTCAAACTTAGCAAGTACCCTGTTTCTCGGTCTCTTCTTGTCCATCATTCTCACAAGTGTCCTCGAGCTGCGTTGGAGTGGTGTTAGCATCGAAGATATATGGCGTAACGAGCAATTTTGGGTCATAGGAGGCGTCTCAGCCCATCTCTTTGCTGTCTTCCAAGGGTTCCTAAAGATGTTGGCTGGCATCGACACCAACTTCACAGTTACTGCAAAGGCAGCTGATGACACTGACTTTGGAGAGCTTTACATGGTGAAATGGACAACACTTTTGATCCCTCCTACAACTCTTATCGTCGTTAACATGGTCGGTGTCGTTGCTGGATTTTCTGATGCATTAAATGGTGGATATGAAGCTTGGGGACCTCTTTTTGGCAAGGTCTTCTTTGCCTTCTGGGTGATTTTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAAAACCGGACTCCAACCATTGTTGTTCTATGGTCAGTACTGTTGGCATCAGTTTTCTCACTTATTTGGGTGAAGATTAACCCATTTGTAAACCAAGTTGACAGTACAACCGTTGCACAAAGCTGCATTGCCATAGATTGTTGA 4425 43.95 MEGQQVLKNLDSLWFFATVFSNKTPPSQSPAPPIVEKPSQNNFVESPGEEIVTPITQNEQNVGNEKKIENNGGFRIKTEEKEEKMRKNRGRRCWGLEKRRKIVGEMDLSYVVKEICECWLFEEMRIGGGNQYQRKKKTKKMPPFEDSIAMKEHIRSWAYAVACTNNSPGCREATMSEAPPRRLRGHKAIATCCIASNDRPGLVATSGEVEFLVAPKRLFWLPPTIVVMLRSASLAYRDFFSWDLNSNEHSDNWKPHLSYLTAVSQFRHYTVITGGLDSKLIMWDFSRGRPIKVLDFDIPDNHPSSNSGQCFNPAFVHAIAVPEVNMLDKTGQICVVARGDGIVHVIDIESEKSKIPSKSGKRIQTRSKGVTAACDMDNQEQTRRKRLYLDYTVGGHSAAVSCVAFSQFGEKGKFIVSGGNDKCIKLWNWCGVPNAGETGSSNHDILHLNINLSKKVNWLCTTPSETENLIVCDTSKVVKNQGCPKKGQVRNRMMVSDVPICHTCGEPVGVDGNGEVFVACNECHFPICRVCVQYDIKEGRNVCLRCGSPFDENVLMDADTKRSGDRNTMASHLSHSQDVGVHARHISSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRPTVKTEQEAEIPPHQQMEEKQISDEAAVTHSFSSVYPIPSSRLTPYRIVIIMRLIILALFFQYRITNPVDSAFGLWLTSIICEIWFEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRAYEEFKVRVNALVAKAQKTPDEGWSMQDGTAWPGNNPRDHPGMIQCSINTLTLSFTRKIESKCSMTEDGLFQVFLGNTGAHDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSQAIREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPTLPSLSKTSSSSCSWCGCCSCCCPSKKTSKDPTEIQRDAKREELDAAIFNLRELDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESANPSTLIKEAIHVIGCGYEEKTAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPARPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLIAYCSLPAICLLTGKFIIPTLSNLASTLFLGLFLSIILTSVLELRWSGVSIEDIWRNEQFWVIGGVSAHLFAVFQGFLKMLAGIDTNFTVTAKAADDTDFGELYMVKWTTLLIPPTTLIVVNMVGVVAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLIWVKINPFVNQVDSTTVAQSCIAIDC 1474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7687785 7704149 - Lsi02G008270.1 Lsi02g00827 655569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00827 1474 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 8 [UDP-FORMING] 707 1474 - -
Lsi02g00827 1474 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 707 1474 - -
Lsi02g00827 1474 SUPERFAMILY WD40 repeat-like 184 429 IPR036322 GO:0005515
Lsi02g00827 1474 Pfam WD domain, G-beta repeat 392 428 IPR001680 GO:0005515
Lsi02g00827 1474 SUPERFAMILY Nucleotide-diphospho-sugar transferases 733 1272 IPR029044 -
Lsi02g00827 1474 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 428 IPR001680 GO:0005515
Lsi02g00827 1474 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 393 428 - -
Lsi02g00827 1474 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 494 707 - -
Lsi02g00827 1474 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 8 [UDP-FORMING] 494 707 - -
Lsi02g00827 1474 Pfam Zinc-binding RING-finger 499 550 IPR027934 -
Lsi02g00827 1474 Gene3D - 149 373 IPR015943 GO:0005515
Lsi02g00827 1474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 485 571 IPR013083 -
Lsi02g00827 1474 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 891 1038 IPR029044 -
Lsi02g00827 1474 SMART WD40_4 246 284 IPR001680 GO:0005515
Lsi02g00827 1474 SMART WD40_4 386 428 IPR001680 GO:0005515
Lsi02g00827 1474 MobiDBLite consensus disorder prediction 615 639 - -
Lsi02g00827 1474 MobiDBLite consensus disorder prediction 621 639 - -
Lsi02g00827 1474 Gene3D - 374 479 IPR015943 GO:0005515
Lsi02g00827 1474 SUPERFAMILY RING/U-box 489 564 - -
Lsi02g00827 1474 Pfam Cellulose synthase 719 1464 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00827 Lsi-Chr2:7687785 Lsi09g01795 Lsi-Chr9:26684478 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00827 K10999 - csv:101208988 2243.77