Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00829 ATGGATGATGTTACCTTCAACAATAATAACCACCAATTTTATTCTGCTGATCTATTAGAAGATTCCGACGAACTAAAACCCGCCCCTGATTCTCCTTATCCTAATTACGCCGCCACCAAGAAGGGCAGAAGAGGGATGAAGAAGAAAGTTGTGTCGGTGAAAATTAATGGCGACAGCCCAAGAAATTCCTCTGGTTCTACAACTCCACCTTCTGATTCTTGGGCCTGGAGAAAGTACGGTCAAAAGCCCATCAAAGGCTCCCCTTATCCCAGGGCGTATTATAGATGTAGTAGTTCAAAGGGATGTCCAGCGAGGAAGCAAGTAGAGAGGAATCGGCTTGATCCAACCATGTTGGTCATTACATATTCGTGTGAGCATAATCATTCCGGTCCGGTTTCAAGAAACAACAATAACAATCACAACCAAACCGCTGCGGTGAAACCCGATTCACCAGAGACGGTTCCGGTTCATCAAGAACCGGAAGTGGAAGAGAAATTTGTGGAGATAGTGGGAGAGGAGTCGTTGATAACAGGGGATGAGTTCAGTTGGTTTGGGGAAATGGAAACGACGTCGTCTACAGTGCTTGAAAGCTCCATTTTTTCAGGGCGAGCATCCAGTGGATTGGTGGATCATTCAATTGCAAGTGACGTGGCAATGCTTTTGCCGATGGGAGATGATGACGTGGACGAATCACTCTTTGCGGATCTCGGCGAGTTGCCGGAGTGTTCTCTTGTGTTCCGGCGCGGCGGCGGTAGGGGATTACCGGTGGATGAACAACCGGCTGCAGCCCAGCGTCGGATCACGCCGTGGTGTGGAACCACCACGTGA 828 48.91 MDDVTFNNNNHQFYSADLLEDSDELKPAPDSPYPNYAATKKGRRGMKKKVVSVKINGDSPRNSSGSTTPPSDSWAWRKYGQKPIKGSPYPRAYYRCSSSKGCPARKQVERNRLDPTMLVITYSCEHNHSGPVSRNNNNNHNQTAAVKPDSPETVPVHQEPEVEEKFVEIVGEESLITGDEFSWFGEMETTSSTVLESSIFSGRASSGLVDHSIASDVAMLLPMGDDDVDESLFADLGELPECSLVFRRGGGRGLPVDEQPAAAQRRITPWCGTTT 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7734065 7735847 + Lsi02G008290.1 Lsi02g00829 655571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00829 275 SMART WRKY_cls 70 130 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi02g00829 275 ProSiteProfiles WRKY domain profile. 71 131 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi02g00829 275 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 31 273 IPR044810 GO:0003700
Lsi02g00829 275 MobiDBLite consensus disorder prediction 1 80 - -
Lsi02g00829 275 MobiDBLite consensus disorder prediction 1 16 - -
Lsi02g00829 275 MobiDBLite consensus disorder prediction 56 74 - -
Lsi02g00829 275 SUPERFAMILY WRKY DNA-binding domain 67 130 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi02g00829 275 Pfam WRKY DNA -binding domain 72 128 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi02g00829 275 Gene3D WRKY domain 57 132 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi02g00829 275 PANTHER OS01G0750100 PROTEIN 31 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00829 Lsi-Chr2:7734065 Lsi05g02069 Lsi-Chr5:27610451 1.97E-32 dispersed
Lsi09g00076 Lsi-Chr9:633526 Lsi02g00829 Lsi-Chr2:7734065 1.55E-19 dispersed
Lsi11g01719 Lsi-Chr11:25269826 Lsi02g00829 Lsi-Chr2:7734065 2.34E-23 dispersed
Lsi02g00829 Lsi-Chr2:7734065 Lsi02g00995 Lsi-Chr2:10058690 6.95E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24788 PF03106 WRKY 5.70E-25 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00829 - - csv:101203902 487.263