Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g00829 | ATGGATGATGTTACCTTCAACAATAATAACCACCAATTTTATTCTGCTGATCTATTAGAAGATTCCGACGAACTAAAACCCGCCCCTGATTCTCCTTATCCTAATTACGCCGCCACCAAGAAGGGCAGAAGAGGGATGAAGAAGAAAGTTGTGTCGGTGAAAATTAATGGCGACAGCCCAAGAAATTCCTCTGGTTCTACAACTCCACCTTCTGATTCTTGGGCCTGGAGAAAGTACGGTCAAAAGCCCATCAAAGGCTCCCCTTATCCCAGGGCGTATTATAGATGTAGTAGTTCAAAGGGATGTCCAGCGAGGAAGCAAGTAGAGAGGAATCGGCTTGATCCAACCATGTTGGTCATTACATATTCGTGTGAGCATAATCATTCCGGTCCGGTTTCAAGAAACAACAATAACAATCACAACCAAACCGCTGCGGTGAAACCCGATTCACCAGAGACGGTTCCGGTTCATCAAGAACCGGAAGTGGAAGAGAAATTTGTGGAGATAGTGGGAGAGGAGTCGTTGATAACAGGGGATGAGTTCAGTTGGTTTGGGGAAATGGAAACGACGTCGTCTACAGTGCTTGAAAGCTCCATTTTTTCAGGGCGAGCATCCAGTGGATTGGTGGATCATTCAATTGCAAGTGACGTGGCAATGCTTTTGCCGATGGGAGATGATGACGTGGACGAATCACTCTTTGCGGATCTCGGCGAGTTGCCGGAGTGTTCTCTTGTGTTCCGGCGCGGCGGCGGTAGGGGATTACCGGTGGATGAACAACCGGCTGCAGCCCAGCGTCGGATCACGCCGTGGTGTGGAACCACCACGTGA | 828 | 48.91 | MDDVTFNNNNHQFYSADLLEDSDELKPAPDSPYPNYAATKKGRRGMKKKVVSVKINGDSPRNSSGSTTPPSDSWAWRKYGQKPIKGSPYPRAYYRCSSSKGCPARKQVERNRLDPTMLVITYSCEHNHSGPVSRNNNNNHNQTAAVKPDSPETVPVHQEPEVEEKFVEIVGEESLITGDEFSWFGEMETTSSTVLESSIFSGRASSGLVDHSIASDVAMLLPMGDDDVDESLFADLGELPECSLVFRRGGGRGLPVDEQPAAAQRRITPWCGTTT | 275 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 7734065 | 7735847 | + | Lsi02G008290.1 | Lsi02g00829 | 655571 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g00829 | 275 | SMART | WRKY_cls | 70 | 130 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi02g00829 | 275 | ProSiteProfiles | WRKY domain profile. | 71 | 131 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi02g00829 | 275 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 31 | 273 | IPR044810 | GO:0003700 | |
Lsi02g00829 | 275 | MobiDBLite | consensus disorder prediction | 1 | 80 | - | - | |
Lsi02g00829 | 275 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Lsi02g00829 | 275 | MobiDBLite | consensus disorder prediction | 56 | 74 | - | - | |
Lsi02g00829 | 275 | SUPERFAMILY | WRKY DNA-binding domain | 67 | 130 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi02g00829 | 275 | Pfam | WRKY DNA -binding domain | 72 | 128 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi02g00829 | 275 | Gene3D | WRKY domain | 57 | 132 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi02g00829 | 275 | PANTHER | OS01G0750100 PROTEIN | 31 | 273 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g00829 | Lsi-Chr2:7734065 | Lsi05g02069 | Lsi-Chr5:27610451 | 1.97E-32 | dispersed | |
Lsi09g00076 | Lsi-Chr9:633526 | Lsi02g00829 | Lsi-Chr2:7734065 | 1.55E-19 | dispersed | |
Lsi11g01719 | Lsi-Chr11:25269826 | Lsi02g00829 | Lsi-Chr2:7734065 | 2.34E-23 | dispersed | |
Lsi02g00829 | Lsi-Chr2:7734065 | Lsi02g00995 | Lsi-Chr2:10058690 | 6.95E-35 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24788 | PF03106 | WRKY | 5.70E-25 | CL0274 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g00829 | - | - | csv:101203902 | 487.263 |