Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00832 ATGGCTGCCGCTGCGATTTTCTCGTCTTTACGAAGGAGGAGATCGCCGTCGCTGGAGGCTTTTTTGGCCCCCGTTGACCTCTCCGATGTGGCCTTAGTTCAAACCTTGGCGATAGTGGCGACGGAGCTAGTTTCTCGATTTTCAGAGAAATCCTTCTTCTTCCAGCGGAGGAATTCGCGATCTCTTATAAGGAAATTGGAGGTTTGTTTAGTCTTTTTGGAGTTTTTGAAGGAAACGGATGCGGATTTACCTCATACAGCGTTGCTCTGTTTGAAGGAGCTTTATTTGTTGTTGTATCGGTCTAAGATACTTCTTGATTATTGCTCTGAATCGAGTAAGTTGTGGCTGTTGCTTCAGAACCACTCGATTTCTGGGCATTTCAATGATTTGAATTTGGAGTTGTTGACATTTTTCGATGTTTTCCCTCTTGAGGAAGTTGAATTGGGGGTGGATGTTAGAGAGCAGGTTGAGCTTTTGCAGAAGCAGTTGAGAAGGACTAGAATGTTTGTTGATGAACGTGACGAAGCATTGAGGACTGGCTTCCTTTCGTTTCTTGACGAGTTCGAGAATGGGAGGCTTCCCAAACCGAGGGAAATGAGGGAGTTTTTTGTGGATAAGTTGAAGATTCGGAATGCGAAGAGTTGTAGAGCTGAAATTGAGTTCTTGGAGGAGCAGATTGTCAATCATGAGGGTGACATCGAACCCACGGTAGCGGTGTTAAATGGTTTCGTTGCTTTTACTAGATATTGTAGGTTTTTCCTCTTTGGATTTGAGGAAGATGAAGTTGATTCAGGCGCGTCGAATCAGAAGAAGCTGAAGAAGAACTTGATTACTCAGGAGATTGCCGAGACGTTTTTAACCGTTCCAAGGGACTTCTGCTGCCCAATATCACTGGATTTGATGAAAGATCCAGTGATCATTTCTACAGGTCAGACATATGATCGCAGTTCGATTACTAGATGGATGGAAGAAGGGCACAACACTTGTCCAAAAACGGGGCAAATGCTCATTCATACCCGCCTGGCTCCCAACCGTGCATTAAGGAATTTGATCGTGCAATGGTGCATTGCCCATGGAGTTCCTTATGATCCACCAGAAGGAATGGATGCATCTGCAGAGAGTTATGCAATGGCTTCTCCCACACGAGCTGCACTAGAAGCCAACAGAGCAACAGCTATGATCCTTATTCAACAGTTATCTGTTGGATCACAAGATGCAAAGACGATTGCTGCTCGTGAGATACGTTTGTTAGCCAAAACAGGGAAAGAGAACCGTGCTTTTATCGCAGAAGCCGGGGCCATCCCCCATCTTCAAAAGTTGCTGGCTTCCCCAAACCCAGTTGCACAGGAGAATTCTGTGACTGCTATGCTTAACCTCTCAATATATGACAAGAACAAAAGTTTGATTATGAGTGAGGTAGGGTGTTTAGGATCGATAACCGAAGTATTGAGATTTGGACGTAGTACAGAAGCACGGGAAAATGCTGCAGCTACGTTATTCAGCCTCTCTGCAGTTCATGACTACAAGAAGAGAATAGCAGAGGAGGATGGCGCAGTTGAAGCCTTGGCAGGGCTGTTGAGAGACGGTACCCCAAGAGGAAAGAAGGATGCTGTAACAGCTTTATTTAATCTCTCAACCCACACGAATAACTGCGTTCGGATGATAGAGGCTGGTGCAGTAACAGCTCTTGTAGGAGCATTGGGGAATGAAGGTGTTGCTGAGGAAGCAGCTGGTGCATTGGCCTTGATTGTTAGACAGCCCGTTGGGGCCGAAGCAGTCACCAAAGAGGAGAGAGCTGTGGCAGGATTGATAGCAATGATGCGATGTGGTACACCAAGAGGAAAAGAGAATGCGGTAGCAGCTTTGCTCGAGTTATGCCGGAGTGGTGGAGCTGCCACGACCGAGCAAGTGTTCAAGGCTCCCACTTTGGCTGGCTTGCTCCAAACACTCCTATTTACCGGTACAAAGCGAGCACGAAGAAAGGCTGCTTCGCTAGCTAGAGTATTCCAGAGATGTGAGCATGTCACAATGCATTACGGCGGATTGGGGGTTGGTTATGCCTATGCAAGTAACTCAGCTCCTAGCAGAGATTCAAGCTTTGCTAGCGAGGTATCTGTGCCGATATCCATCTCGGTACCGGTCGTATAA 2148 46.65 MAAAAIFSSLRRRRSPSLEAFLAPVDLSDVALVQTLAIVATELVSRFSEKSFFFQRRNSRSLIRKLEVCLVFLEFLKETDADLPHTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQNHSISGHFNDLNLELLTFFDVFPLEEVELGVDVREQVELLQKQLRRTRMFVDERDEALRTGFLSFLDEFENGRLPKPREMREFFVDKLKIRNAKSCRAEIEFLEEQIVNHEGDIEPTVAVLNGFVAFTRYCRFFLFGFEEDEVDSGASNQKKLKKNLITQEIAETFLTVPRDFCCPISLDLMKDPVIISTGQTYDRSSITRWMEEGHNTCPKTGQMLIHTRLAPNRALRNLIVQWCIAHGVPYDPPEGMDASAESYAMASPTRAALEANRATAMILIQQLSVGSQDAKTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLASPNPVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGSITEVLRFGRSTEARENAAATLFSLSAVHDYKKRIAEEDGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTNNCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAEAVTKEERAVAGLIAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPTLAGLLQTLLFTGTKRARRKAASLARVFQRCEHVTMHYGGLGVGYAYASNSAPSRDSSFASEVSVPISISVPVV 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7809583 7811730 + Lsi02G008320.1 Lsi02g00832 655574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00832 715 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 696 - -
Lsi02g00832 715 SUPERFAMILY RING/U-box 277 362 - -
Lsi02g00832 715 SMART arm_5 506 546 IPR000225 GO:0005515
Lsi02g00832 715 SMART arm_5 547 585 IPR000225 GO:0005515
Lsi02g00832 715 SMART arm_5 463 504 IPR000225 GO:0005515
Lsi02g00832 715 SMART arm_5 421 461 IPR000225 GO:0005515
Lsi02g00832 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Lsi02g00832 715 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Lsi02g00832 715 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Lsi02g00832 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Lsi02g00832 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Lsi02g00832 715 PANTHER U BOX DOMAIN-CONTAINING 11 696 - -
Lsi02g00832 715 Coils Coil 212 232 - -
Lsi02g00832 715 SUPERFAMILY ARM repeat 394 669 IPR016024 -
Lsi02g00832 715 CDD RING-Ubox_PUB 292 334 IPR045210 -
Lsi02g00832 715 Gene3D - 392 667 IPR011989 -
Lsi02g00832 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01607 Lsi-Chr1:14430574 Lsi02g00832 Lsi-Chr2:7809583 9.24E-136 dispersed
Lsi02g00832 Lsi-Chr2:7809583 Lsi03g00296 Lsi-Chr3:3597088 5.82E-136 dispersed
Lsi02g00832 Lsi-Chr2:7809583 Lsi02g00361 Lsi-Chr2:3074254 8.55E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00832 - - csv:101204151 1251.88