Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00836 ATGACTTCGGGTTCGAGAATGCCGACTTGGAAGGAAAGGGAAAACAACAAGCGTCGTGAGAGGCGCCGTCGTGCAATCGCCGCTAAGATCTTTCTCGGCTTGCGAATGTACGGTAACTACAAGCTCCCCAAGCACTGCGACAACAATGAGGTCCTCAAAGCCCTCTGTGATGAAGCTGGATGGACTGTCGAAGAAGACGGCACTACCTATCGGAAGTATCATGGAGCAATTACGGTCCCTTTTCCTTTTGGCTTGCTTGCTTTCATCTTTTACAAAATCAACTTATGGCCACTCTTACCGAGATTCCCGGGCTTCATTGAGATACTTTCTTTTTCCAGTTCATTGAGAGCACAACTTGATAGTGGAGCTGGGCCAGGATGCAAGCTTGTGGAACGCGATATCATGGGCGGGTCAGCTTCTGCAAGTCCATGTTCATCTTACCAGCCGAGTCCACGTGCATCTTATAACCCAAGTCCTGCGTCTTCTTCCTTCCCAAGCCCCACATCTTCCCGTTATGCCATTAATGGCAATGGCAATGCTACTGATCCCAATTCCCTCATCCCATGGCTGAAAAACCTCTCCTCGGGTTCATCATCAGCTTCCTCCAGGCTGCCTCACCATCTTTTTATTACTTGTGGCTCCATAAGTGCGCCCGTCACCCCTCCATCGAGCTCCCCAACTGCGCGAACACCCAGAAAACCAAATGATTGGGACAATCATCCAGCAGTTGCTCCTGCTTGGGCTGCACATCGCTTCTCATGTTTGCCTGCGTCAACCCCACCGAGCCCTGGACGTCAGGTGTTGGCTGATCCAGCATGGCTTGATAGTATGCGGATTCCTCAAAGTGGACCATCATCTCCAACCTTCAGCCTTGTGGCAAGGAATCCTTTTGGATTTAAGGAGCCAATGTCCGCTGGAGGGTCTCGTAATTGGACTCCTGCACAGAGCGGGACATGCTCACCCACAGTTGCTGCAGGCACTGATCATACTTCAGATGTTCCTATGATGGATGGAACTGCAGCAGAGTTCGCCTTCGGAAGTTGTTCGATTGGGTTGGTGAAGCCTTGGGAGGGAGAGAGAATTCATGAGGAATACATCTCTGATGATCTCGAACTTACACTTGGGAATTCAAGGACAAGGTAA 1143 50.48 MTSGSRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCDEAGWTVEEDGTTYRKYHGAITVPFPFGLLAFIFYKINLWPLLPRFPGFIEILSFSSSLRAQLDSGAGPGCKLVERDIMGGSASASPCSSYQPSPRASYNPSPASSSFPSPTSSRYAINGNGNATDPNSLIPWLKNLSSGSSSASSRLPHHLFITCGSISAPVTPPSSSPTARTPRKPNDWDNHPAVAPAWAAHRFSCLPASTPPSPGRQVLADPAWLDSMRIPQSGPSSPTFSLVARNPFGFKEPMSAGGSRNWTPAQSGTCSPTVAAGTDHTSDVPMMDGTAAEFAFGSCSIGLVKPWEGERIHEEYISDDLELTLGNSRTR 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7840220 7844147 + Lsi02G008360.1 Lsi02g00836 655578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00836 380 MobiDBLite consensus disorder prediction 141 177 - -
Lsi02g00836 380 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 126 380 IPR033264 GO:0003700|GO:0006351|GO:0009742
Lsi02g00836 380 MobiDBLite consensus disorder prediction 1 20 - -
Lsi02g00836 380 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 194 IPR008540 -
Lsi02g00836 380 MobiDBLite consensus disorder prediction 218 240 - -
Lsi02g00836 380 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 72 - -
Lsi02g00836 380 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 126 380 - -
Lsi02g00836 380 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 72 IPR033264 GO:0003700|GO:0006351|GO:0009742
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00836 - - - csv:101204637 525.398
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00836 Lsi-Chr2:7840220 Lsi07g00285 Lsi-Chr7:3072923 7.47E-116 dispersed
Lsi02g00836 Lsi-Chr2:7840220 Lsi01g00704 Lsi-Chr1:5623250 2.96E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g261 Blo01g00870 Blo11g00263 . . . . Bma14g00977 . Cmo13g00609 Cmo18g00412 . . . . . Cpe09g00790 . . . . . . . . . . . . . . . . . Cone6ag0940 Cone9ag0944 . . Chy12g00053 . . . . Bda07g00961 . . . . Sed08g2730 . . Cma13g00580 Cma18g00433 Car13g00463 Car18g00409 . Cpe20g00481 Bhi08g02145 Tan05g2533 Cmetu12g0459 Lac10g0987 Hepe07g1834 . . Cla03g00693 Cam03g0700 Cec03g0673 Cco03g0709 Clacu03g0742 Cmu03g1334 Cre03g0981 Lsi02g00836 Csa01g02293 . Cme12g01261
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01414 . 1 310 BZR Transcription Factor Family AT1G75080 58.8 1.6e-88 323.2
Lsi01g00704 . 62 352 BZR Transcription Factor Family AT1G75080 59.1 4.7e-80 295.0
Lsi08g01414 . 1 311 BZR Transcription Factor Family AT1G19350 59.1 4.7e-88 321.6
Lsi01g00704 . 62 351 BZR Transcription Factor Family AT1G19350 59.5 3.4e-78 288.9
Lsi01g00704 . 40 347 BZR Transcription Factor Family AT3G50750 58.0 5.3e-77 284.6
Lsi08g01414 . 1 310 BZR Transcription Factor Family AT3G50750 51.8 2.5e-63 239.2
Lsi07g00285 . 77 325 BZR Transcription Factor Family AT4G18890 54.2 1.6e-49 193.0
Lsi02g00836 . 133 380 BZR Transcription Factor Family AT4G18890 53.4 5.6e-47 184.5
Lsi07g00285 . 1 325 BZR Transcription Factor Family AT1G78700 73.1 4.7e-117 417.9
Lsi02g00836 . 1 380 BZR Transcription Factor Family AT1G78700 58.3 1.9e-94 342.8
Lsi01g00704 . 62 234 BZR Transcription Factor Family AT4G36780 79.1 3.8e-64 241.9
Lsi08g01414 . 33 204 BZR Transcription Factor Family AT4G36780 62.7 3.9e-45 178.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24790 PF05687 BES1_N 6.30E-60 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00836 Lsi_Chr02 FPKM 12.391348 15.45017 7.084608 8.548081 7.666512 7.216331 8.275732 9.068035 8.950503 10.549794