Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00836 ATGACTTCGGGTTCGAGAATGCCGACTTGGAAGGAAAGGGAAAACAACAAGCGTCGTGAGAGGCGCCGTCGTGCAATCGCCGCTAAGATCTTTCTCGGCTTGCGAATGTACGGTAACTACAAGCTCCCCAAGCACTGCGACAACAATGAGGTCCTCAAAGCCCTCTGTGATGAAGCTGGATGGACTGTCGAAGAAGACGGCACTACCTATCGGAAGTATCATGGAGCAATTACGGTCCCTTTTCCTTTTGGCTTGCTTGCTTTCATCTTTTACAAAATCAACTTATGGCCACTCTTACCGAGATTCCCGGGCTTCATTGAGATACTTTCTTTTTCCAGTTCATTGAGAGCACAACTTGATAGTGGAGCTGGGCCAGGATGCAAGCTTGTGGAACGCGATATCATGGGCGGGTCAGCTTCTGCAAGTCCATGTTCATCTTACCAGCCGAGTCCACGTGCATCTTATAACCCAAGTCCTGCGTCTTCTTCCTTCCCAAGCCCCACATCTTCCCGTTATGCCATTAATGGCAATGGCAATGCTACTGATCCCAATTCCCTCATCCCATGGCTGAAAAACCTCTCCTCGGGTTCATCATCAGCTTCCTCCAGGCTGCCTCACCATCTTTTTATTACTTGTGGCTCCATAAGTGCGCCCGTCACCCCTCCATCGAGCTCCCCAACTGCGCGAACACCCAGAAAACCAAATGATTGGGACAATCATCCAGCAGTTGCTCCTGCTTGGGCTGCACATCGCTTCTCATGTTTGCCTGCGTCAACCCCACCGAGCCCTGGACGTCAGGTGTTGGCTGATCCAGCATGGCTTGATAGTATGCGGATTCCTCAAAGTGGACCATCATCTCCAACCTTCAGCCTTGTGGCAAGGAATCCTTTTGGATTTAAGGAGCCAATGTCCGCTGGAGGGTCTCGTAATTGGACTCCTGCACAGAGCGGGACATGCTCACCCACAGTTGCTGCAGGCACTGATCATACTTCAGATGTTCCTATGATGGATGGAACTGCAGCAGAGTTCGCCTTCGGAAGTTGTTCGATTGGGTTGGTGAAGCCTTGGGAGGGAGAGAGAATTCATGAGGAATACATCTCTGATGATCTCGAACTTACACTTGGGAATTCAAGGACAAGGTAA 1143 50.48 MTSGSRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCDEAGWTVEEDGTTYRKYHGAITVPFPFGLLAFIFYKINLWPLLPRFPGFIEILSFSSSLRAQLDSGAGPGCKLVERDIMGGSASASPCSSYQPSPRASYNPSPASSSFPSPTSSRYAINGNGNATDPNSLIPWLKNLSSGSSSASSRLPHHLFITCGSISAPVTPPSSSPTARTPRKPNDWDNHPAVAPAWAAHRFSCLPASTPPSPGRQVLADPAWLDSMRIPQSGPSSPTFSLVARNPFGFKEPMSAGGSRNWTPAQSGTCSPTVAAGTDHTSDVPMMDGTAAEFAFGSCSIGLVKPWEGERIHEEYISDDLELTLGNSRTR 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7840220 7844147 + Lsi02G008360.1 Lsi02g00836 655578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00836 380 MobiDBLite consensus disorder prediction 141 177 - -
Lsi02g00836 380 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 126 380 IPR033264 GO:0003700|GO:0006351|GO:0009742
Lsi02g00836 380 MobiDBLite consensus disorder prediction 1 20 - -
Lsi02g00836 380 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 194 IPR008540 -
Lsi02g00836 380 MobiDBLite consensus disorder prediction 218 240 - -
Lsi02g00836 380 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 72 - -
Lsi02g00836 380 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 126 380 - -
Lsi02g00836 380 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 72 IPR033264 GO:0003700|GO:0006351|GO:0009742
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00836 Lsi-Chr2:7840220 Lsi07g00285 Lsi-Chr7:3072923 7.47E-116 dispersed
Lsi02g00836 Lsi-Chr2:7840220 Lsi01g00704 Lsi-Chr1:5623250 2.96E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24790 PF05687 BES1_N 6.30E-60 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00836 - - csv:101204637 525.398