Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g00836 | ATGACTTCGGGTTCGAGAATGCCGACTTGGAAGGAAAGGGAAAACAACAAGCGTCGTGAGAGGCGCCGTCGTGCAATCGCCGCTAAGATCTTTCTCGGCTTGCGAATGTACGGTAACTACAAGCTCCCCAAGCACTGCGACAACAATGAGGTCCTCAAAGCCCTCTGTGATGAAGCTGGATGGACTGTCGAAGAAGACGGCACTACCTATCGGAAGTATCATGGAGCAATTACGGTCCCTTTTCCTTTTGGCTTGCTTGCTTTCATCTTTTACAAAATCAACTTATGGCCACTCTTACCGAGATTCCCGGGCTTCATTGAGATACTTTCTTTTTCCAGTTCATTGAGAGCACAACTTGATAGTGGAGCTGGGCCAGGATGCAAGCTTGTGGAACGCGATATCATGGGCGGGTCAGCTTCTGCAAGTCCATGTTCATCTTACCAGCCGAGTCCACGTGCATCTTATAACCCAAGTCCTGCGTCTTCTTCCTTCCCAAGCCCCACATCTTCCCGTTATGCCATTAATGGCAATGGCAATGCTACTGATCCCAATTCCCTCATCCCATGGCTGAAAAACCTCTCCTCGGGTTCATCATCAGCTTCCTCCAGGCTGCCTCACCATCTTTTTATTACTTGTGGCTCCATAAGTGCGCCCGTCACCCCTCCATCGAGCTCCCCAACTGCGCGAACACCCAGAAAACCAAATGATTGGGACAATCATCCAGCAGTTGCTCCTGCTTGGGCTGCACATCGCTTCTCATGTTTGCCTGCGTCAACCCCACCGAGCCCTGGACGTCAGGTGTTGGCTGATCCAGCATGGCTTGATAGTATGCGGATTCCTCAAAGTGGACCATCATCTCCAACCTTCAGCCTTGTGGCAAGGAATCCTTTTGGATTTAAGGAGCCAATGTCCGCTGGAGGGTCTCGTAATTGGACTCCTGCACAGAGCGGGACATGCTCACCCACAGTTGCTGCAGGCACTGATCATACTTCAGATGTTCCTATGATGGATGGAACTGCAGCAGAGTTCGCCTTCGGAAGTTGTTCGATTGGGTTGGTGAAGCCTTGGGAGGGAGAGAGAATTCATGAGGAATACATCTCTGATGATCTCGAACTTACACTTGGGAATTCAAGGACAAGGTAA | 1143 | 50.48 | MTSGSRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCDEAGWTVEEDGTTYRKYHGAITVPFPFGLLAFIFYKINLWPLLPRFPGFIEILSFSSSLRAQLDSGAGPGCKLVERDIMGGSASASPCSSYQPSPRASYNPSPASSSFPSPTSSRYAINGNGNATDPNSLIPWLKNLSSGSSSASSRLPHHLFITCGSISAPVTPPSSSPTARTPRKPNDWDNHPAVAPAWAAHRFSCLPASTPPSPGRQVLADPAWLDSMRIPQSGPSSPTFSLVARNPFGFKEPMSAGGSRNWTPAQSGTCSPTVAAGTDHTSDVPMMDGTAAEFAFGSCSIGLVKPWEGERIHEEYISDDLELTLGNSRTR | 380 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 7840220 | 7844147 | + | Lsi02G008360.1 | Lsi02g00836 | 655578 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g00836 | 380 | MobiDBLite | consensus disorder prediction | 141 | 177 | - | - | |
Lsi02g00836 | 380 | PANTHER | BES1/BZR1 HOMOLOG PROTEIN 3-RELATED | 126 | 380 | IPR033264 | GO:0003700|GO:0006351|GO:0009742 | |
Lsi02g00836 | 380 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Lsi02g00836 | 380 | Pfam | BES1/BZR1 plant transcription factor, N-terminal | 4 | 194 | IPR008540 | - | |
Lsi02g00836 | 380 | MobiDBLite | consensus disorder prediction | 218 | 240 | - | - | |
Lsi02g00836 | 380 | PANTHER | BES1/BZR1 HOMOLOG PROTEIN 4 | 1 | 72 | - | - | |
Lsi02g00836 | 380 | PANTHER | BES1/BZR1 HOMOLOG PROTEIN 4 | 126 | 380 | - | - | |
Lsi02g00836 | 380 | PANTHER | BES1/BZR1 HOMOLOG PROTEIN 3-RELATED | 1 | 72 | IPR033264 | GO:0003700|GO:0006351|GO:0009742 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g00836 | Lsi-Chr2:7840220 | Lsi07g00285 | Lsi-Chr7:3072923 | 7.47E-116 | dispersed | |
Lsi02g00836 | Lsi-Chr2:7840220 | Lsi01g00704 | Lsi-Chr1:5623250 | 2.96E-37 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24790 | PF05687 | BES1_N | 6.30E-60 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g00836 | - | - | csv:101204637 | 525.398 |