Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00840 ATGATGGTGGCCAAGAGCTTCTTCGTTTTCATTGTTCTTGTGGTGGATTGCTTCATGTTCTTCAGATTTGCAGATTCCAAGGTTCCCAAAGAAGAGGTTGATGTACTACAGCAAATTACGAGAACATTAGGTGCAGTTTATTGGAAATTCAATAGTGACTCTTGTGCCGTTGAAATGTTTGGGGTGACAGAAAAATCTCCCAGGGGATCTGAGAATATAATTGGTTGTGATTGCAACCTCGAGAACAGCACACTTTGTCATGTCGTAAGGATAGAATTCAAAAATCACAATCTGCCCGGTGTTCTTCCACCTGAAATAGTCCAACTTCCTTACTTGCAAGTAGTTGATTTTGCTTACAACTACCTTCATGGTAATATACCTCGGGAATGGGCTTCAACGCGGCTGACATCAATCTCTCTTCTTGTAAATCGGTTATCAGGGGAAATACCAGCGGAATTGGGGAATATTACTACTCTAACATTACTGAACCTTGAAGCAAACCAATTTACGGGTGCAATACCATCACAACTGGGGAGGTTAAGCAACCTGCATAGCTTGCTGCTATCATCTAATCAATTAACTGGCACATTGCCGAAAACGTTTGCTGGTTTGGAAAACCTAACAGATTTCCGGATAAATGATAACAACCTAAATGGAACCATACCTGAGTTCATACAGAATTGGATACTACTTGAAAGATTAGAACTACATGCTAGTGGACTTCAGGGACCAATTCCTGCAAACATATCCCTTTTGAGGAACTTAGAAGAATTAAGGATCAGTGATATTAGTGGGCCAAAGCAGGATTTTCCTGAGTTGAGAAACATGACGGGCATGGTTAGATTGGTTCTGAGAAATTGTAACATTGCTGGAAAGATTCCTTCATATGTGTGGACGTTAGCAAAAATGGAAATGCTGGACGTCAGCTTTAACCATATAACTGGGGAAATTCCAGAGGATATAAATATGGAGCGCATTAGATTTCTCTTCTTAAGTGGCAATATGCTGAGTGGCGACCTACCAGAGTCAATCTTGAAGGATGGAACTAATGTCGATCTTTCATACAATAACTTGACATGGCAAGGCCCTGAGCAGCATGCTTGTAGAAAGAATCTGAATATGAATCTGAACTTGTTTCGAAGTTCTTCCACCAGCAACACCTTACAAGAAAGCCTCCCCTGCTTAAAGGATTCCATCTGTTCAAAATATTCAAAATGTTGGTTCGTCAATTCTGGCGGGAATGACTTAACTATGGAGGTGAACAACAAAAACGTTCTCTACAATGGGGATGCAGATGTTGAAGGTGGGACAGCAAAATTTTACATTGATCATGATAGCTACTGGGGATTGAGTAGTACTGGAGATTTCATGGATGATTTTAATTACCAAAATACGCGCTACACTTTATCCCTGCCTTCATCAAATTTGTCTGAGATGTATTCAACAGCGCGTCGAAGTCCAATTACACTCACTTATTTCCATCATTGCTTGGATAATGGAAACTACTCAGTGAAGCTTCATTTTACCGAGTTACAATTTACAGATGATAAGACATATACAAGTCTTGGAAGGCGGAAATTTGATATCTACATTCAGGATAGGTTGGTATTGGAGAATTTTGATATTGAAGAGAAGTCGGGAGGAGCTCGAAAACCAACTGAAATGCAGTTTAATAACATTAGTATAATTAATCATGTCCTGGAGATACGATTCTATTGGGCTGGAAAAGGGACAACTAGAATTCCTGATAGAGGAGTTTATGGTCCACTTATATCAGCTATTTCTGTTTATTCTGATCTTAAATATTGTTCAATCCGTGAAAGTGGTAAAAAGCAAATTGTAGCAATCGCTGTTGGCGTTGCGGTTGGATTATTATGCCTTGCTACAGTCATCATAGTGGGACTTCTTTGGTGGAAAGGCACACTTAGAGCAATCAGGCGGAGTAAAGGTGGTACAGATCTTGCAGGAATAGAAGTTCAGACTGGAATTTTTACCTTAAAACAAATAAAAGCCGCCACCAATCATTTTGATTCTTGTAATAAAATTGGAGAAGGTGGTTTTGGCCCTGTTTATAAGGGTCGATTGGTTGATGGTACTATTGTAGCAATCAAGCAGCTCTCATCCAAATCAAAGCAGGGAAATCGCGAATTTCTCAATGAGATAGGAATGATCTCTTGTTTGCAACACCCAAATTTAGTCAAGCTCCATGGATGCTGTATTGAAGGGGATCAATTGTTGTTGGTGTATGAATATTTGGAAAACAATAGTCTTGCCCGAGCACTATTTGGTCCGGATTATAGTCGGCTTAATCTAGATTGGCCAACCAGGCTTAGAATCTGTATCGGTATAGCAAAAGGCTTAGCATATCTTCATGAGGAATCGAGCCTCAAAATTGTTCACAGAGACATCAAAGCTACCAATGTGCTACTGGATGGTGAATTGAATCCTAAAATATCTGATTTTGGTTTGGCTAAGCTTGACGATGAGGAGAAGACTCATATCACCACCAGAGTGGCTGGGACCATAGGATATATGGCTCCAGAATATGCACTTTGGGGTTATCTGACCTACAAAGCAGATGTCTATAGTTTTGGAGTTGTGGCCTTAGAAGTTATTAGTGGAAGAAGCAACAATGATTATGTACCAAGTGAAACTTGTGTTTGCCTTCTAGATTGGGCTTGTCACTTACAACAATCTGGGAACCTTATGGAGATGGTAGATGAGAAATTGAGGTCAGAAATCGACAGGAAAGAAGCGGAAAACATGGTTAAAATAGCCCTTCTCTGCACCAATGCTTCGCCATCAGTAAGGCCTGCGATGTCGGAAGTGGTGAACATGCTCGAAGGACGATTGGCAATTCCAGACCTGATCCCGGAACCAAGTAGTTATAATGAAGATCTGAGGTTCAAGGCAATGAGAGATATGCGTAAAGAGCAACAAAGCCAAAGCCTGAGTGAAAGCCAGACTCAAAATTCCACAATGCAAACATTTGAGTCTTCCACTACATCTGGAAATGAGTTCTATGACATCAACCCAGAGCCAAGATCATCAACAATCTGA 3060 40.46 MMVAKSFFVFIVLVVDCFMFFRFADSKVPKEEVDVLQQITRTLGAVYWKFNSDSCAVEMFGVTEKSPRGSENIIGCDCNLENSTLCHVVRIEFKNHNLPGVLPPEIVQLPYLQVVDFAYNYLHGNIPREWASTRLTSISLLVNRLSGEIPAELGNITTLTLLNLEANQFTGAIPSQLGRLSNLHSLLLSSNQLTGTLPKTFAGLENLTDFRINDNNLNGTIPEFIQNWILLERLELHASGLQGPIPANISLLRNLEELRISDISGPKQDFPELRNMTGMVRLVLRNCNIAGKIPSYVWTLAKMEMLDVSFNHITGEIPEDINMERIRFLFLSGNMLSGDLPESILKDGTNVDLSYNNLTWQGPEQHACRKNLNMNLNLFRSSSTSNTLQESLPCLKDSICSKYSKCWFVNSGGNDLTMEVNNKNVLYNGDADVEGGTAKFYIDHDSYWGLSSTGDFMDDFNYQNTRYTLSLPSSNLSEMYSTARRSPITLTYFHHCLDNGNYSVKLHFTELQFTDDKTYTSLGRRKFDIYIQDRLVLENFDIEEKSGGARKPTEMQFNNISIINHVLEIRFYWAGKGTTRIPDRGVYGPLISAISVYSDLKYCSIRESGKKQIVAIAVGVAVGLLCLATVIIVGLLWWKGTLRAIRRSKGGTDLAGIEVQTGIFTLKQIKAATNHFDSCNKIGEGGFGPVYKGRLVDGTIVAIKQLSSKSKQGNREFLNEIGMISCLQHPNLVKLHGCCIEGDQLLLVYEYLENNSLARALFGPDYSRLNLDWPTRLRICIGIAKGLAYLHEESSLKIVHRDIKATNVLLDGELNPKISDFGLAKLDDEEKTHITTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEVISGRSNNDYVPSETCVCLLDWACHLQQSGNLMEMVDEKLRSEIDRKEAENMVKIALLCTNASPSVRPAMSEVVNMLEGRLAIPDLIPEPSSYNEDLRFKAMRDMRKEQQSQSLSESQTQNSTMQTFESSTTSGNEFYDINPEPRSSTI 1019
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7864102 7876610 + Lsi02G008400.1 Lsi02g00840 655582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00840 1019 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672|GO:0006468
Lsi02g00840 1019 Gene3D Ribonuclease Inhibitor 265 392 IPR032675 -
Lsi02g00840 1019 Pfam Protein tyrosine and serine/threonine kinase 680 947 IPR001245 GO:0004672|GO:0006468
Lsi02g00840 1019 SUPERFAMILY L domain-like 82 318 - -
Lsi02g00840 1019 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 68 995 - -
Lsi02g00840 1019 MobiDBLite consensus disorder prediction 981 1019 - -
Lsi02g00840 1019 SMART serkin_6 676 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00840 1019 SUPERFAMILY Protein kinase-like (PK-like) 660 981 IPR011009 -
Lsi02g00840 1019 ProSiteProfiles Protein kinase domain profile. 676 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00840 1019 Pfam Malectin domain 406 594 IPR021720 -
Lsi02g00840 1019 Gene3D - 405 600 - -
Lsi02g00840 1019 Pfam Leucine rich repeat 158 217 IPR001611 GO:0005515
Lsi02g00840 1019 Gene3D Ribonuclease Inhibitor 47 197 IPR032675 -
Lsi02g00840 1019 Gene3D Ribonuclease Inhibitor 198 264 IPR032675 -
Lsi02g00840 1019 MobiDBLite consensus disorder prediction 973 1019 - -
Lsi02g00840 1019 PANTHER RECEPTOR-LIKE KINASE IN FLOWERS 1-RELATED 68 995 - -
Lsi02g00840 1019 Gene3D Transferase(Phosphotransferase) domain 1 752 953 - -
Lsi02g00840 1019 Gene3D Phosphorylase Kinase; domain 1 641 751 - -
Lsi02g00840 1019 CDD STKc_IRAK 682 949 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00840 Lsi-Chr2:7864102 Lsi04g01986 Lsi-Chr4:26937585 1.49E-09 dispersed
Lsi05g00175 Lsi-Chr5:2506651 Lsi02g00840 Lsi-Chr2:7864102 9.61E-76 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83390 PF07714 PK_Tyr_Ser-Thr 8.70E-49 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00840 - - csv:101204874 1820.44