Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00843 ATGGAAAGGAATAACAGTAACAACGGGGTGAGGTTTTTGTTGGGGAAGCAATCGTCGATGGCGCCGGACCGGAAGCCGGAGGAGGAGGCGGAGGCGGTTGAAGACGGGGAGGAGATCGATCCGGGGGTGAGATTGATGTATTTGGCGAATGAAGGCGATTTGGAAGGGATTAAGGAGCTTCTAGATTCTGGAATTGATGTCAATTTTCACGATGTTGATAATCGGACGGCGCTTCATGTTGCTGCTTGTCAAGGCTGCTCCGAGATCGTCGACTTATTGCTCCGCCGTGGCGCTGAGATTGACCGTAAAGATCGCTGGGGTAGTTCGCCTCTTGCAGATGCTATATTCTACAAAAATCATGAAGTTATCAAATTGCTGGAAAAAAGAGGCGCAAAACATCTGATGGCTCCAATGCTTGTCAAGCATGCTCGTGAAGTCCCAGAATATGAAATTGATCCTAAAGAATTTGACTTCACAAAGAGTGTCAACTTGACCAAGTTGGTTGGTTTTTTTACTTTTACTGTTGATCTTAATCTTAAATTCCTTCCAGGGAACGCCTTCAGAGATGAGCTTGCATTGCTGCAGAAGATTCGGCATCCTAACGTCGTTCAATTTCTTGGTGCTGTCACTCAAAGTAGTCCCATGATGATTGTTACTGAATATTTGCCTAAGGGAGATCTTTGTCAACTTTTACAGAGAAAAGGAGCATTAAAACCAATTGTAGCTGTGAAATTTTCCCTTGATATTGCAAGGGGAATGAACTATCTTCATGAAAATAAACCTGCACCGATCATCCACCGTGATCTCGAGCCATCAAATATATTGCGAGATGACACTGGGAACCTGAAAGTTGCTGACTTTGGAGTTAGCAAGTTGCTCACAGTCAAGGAGGACAAACCTCTAACTTGTCAAGACACTGCTTGCCGATATGTCGCTCCAGAAGTTTTCAAAAACAATGGATACGATACCAAAGTAGATGTCTTCTCCTTTGCTTTAATTCTACAAGAGATGATCGAAGGGCAGCCACCATTTTCAAACAAAAAAGAAAATGCCATTCCTAAAGAGTATGCAGCCGGAATACGCCCTCCTTTCAAAGCTCCAGCTAAATTCTACGCCCATGGAATTAAAGAGTTGATTGAAGATTGCTGGGATGAGAAGCCATCAAAGAGACCAACTTTTAGACAGATAATCACAAGGCTGGAAACAATTCATCACAGTCTTAGCCATAGAAGGCGTTGGAAGGTTCATCTCTTTCACTTCTTTTTCTATCTGTCTGCTGCCGTTTTCAAACACTGA 1296 43.44 MERNNSNNGVRFLLGKQSSMAPDRKPEEEAEAVEDGEEIDPGVRLMYLANEGDLEGIKELLDSGIDVNFHDVDNRTALHVAACQGCSEIVDLLLRRGAEIDRKDRWGSSPLADAIFYKNHEVIKLLEKRGAKHLMAPMLVKHAREVPEYEIDPKEFDFTKSVNLTKLVGFFTFTVDLNLKFLPGNAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLCQLLQRKGALKPIVAVKFSLDIARGMNYLHENKPAPIIHRDLEPSNILRDDTGNLKVADFGVSKLLTVKEDKPLTCQDTACRYVAPEVFKNNGYDTKVDVFSFALILQEMIEGQPPFSNKKENAIPKEYAAGIRPPFKAPAKFYAHGIKELIEDCWDEKPSKRPTFRQIITRLETIHHSLSHRRRWKVHLFHFFFYLSAAVFKH 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7891431 7896762 + Lsi02G008430.1 Lsi02g00843 655585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00843 431 ProSiteProfiles Ankyrin repeat region circular profile. 73 105 - -
Lsi02g00843 431 Gene3D - 13 145 IPR036770 -
Lsi02g00843 431 Gene3D Transferase(Phosphotransferase) domain 1 178 416 - -
Lsi02g00843 431 SUPERFAMILY Protein kinase-like (PK-like) 186 419 IPR011009 -
Lsi02g00843 431 SMART ANK_2a 73 102 IPR002110 GO:0005515
Lsi02g00843 431 SMART ANK_2a 40 69 IPR002110 GO:0005515
Lsi02g00843 431 SMART ANK_2a 106 135 IPR002110 GO:0005515
Lsi02g00843 431 Pfam Ankyrin repeats (3 copies) 45 132 IPR002110 GO:0005515
Lsi02g00843 431 CDD STKc_MAP3K-like 185 400 - -
Lsi02g00843 431 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 12 422 - -
Lsi02g00843 431 PIRSF ILK 1 422 - -
Lsi02g00843 431 ProSiteProfiles Protein kinase domain profile. 100 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00843 431 SUPERFAMILY Ankyrin repeat 44 133 IPR036770 -
Lsi02g00843 431 Pfam Protein tyrosine and serine/threonine kinase 186 400 IPR001245 GO:0004672|GO:0006468
Lsi02g00843 431 ProSiteProfiles Ankyrin repeat profile. 73 105 IPR002110 GO:0005515
Lsi02g00843 431 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 12 422 - -
Lsi02g00843 431 MobiDBLite consensus disorder prediction 1 34 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00206 Lsi02g00843 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00843 Lsi-Chr2:7891431 Lsi04g00391 Lsi-Chr4:3856559 4.42E-76 dispersed
Lsi10g01097 Lsi-Chr10:15228376 Lsi02g00843 Lsi-Chr2:7891431 7.33E-15 transposed
Lsi01g00206 Lsi-Chr1:1936082 Lsi02g00843 Lsi-Chr2:7891431 0 wgd
Lsi10g01548 Lsi-Chr10:19887308 Lsi02g00843 Lsi-Chr2:7891431 3.05E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83391 PF07714 PK_Tyr_Ser-Thr 5.60E-50 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00843 - - csv:101205123 738.799