Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00845 ATGAGTTTCCAAGATGATGATGAAGAGTCAGCAGCAGCAGCAGCAGCAGCAGAAATACGACGAAGATCATCATCATCATCAAGAACAGGAAGAGGGAAAATTGAAATAAAAAGAATTGAAAATACAACAAATCGTCAAGTTACTTTCTGTAAACGAAGAAATGGTTTGCTTAAAAAAGCTTATGAACTTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCACTCGTGGTCGTCTCTATGAATATGCCAACAACAGTGTGAGGGCTACAATTTCGAGGTACAAAAAGGCATGTTCGGATCCCTCCAGCGCCGTATCCGTTTCAGAAGCCAATACTCAGTTCTACCAGCAAGAATCCGCCAAATTGCGAGCTCAAATCGGGAATTTGCAAAACCTGAACAGTTCGTTGTCGGTTAAAGATCTGAAAAGCCTGGAGGTCAAACTGGAGAAAGGAATTAGCCGAATTCGATCCAGAAAGAATGAGCTTCTGTTTGCGGAGATTGAATACATGCAGAAAAGGATAGCTGAGACAGAGAGAAGCCAACAAAACACAAGGGAAAACAATGCAATGGCAGCAACAGGAACAGGAAATCAAGGATCTGTGGCTCCAGATTTAGAGGTTAATCATCAGCAATATGACTCAACAAACTATTTTCCTCATCATAATCATCATATCTCTCTGCAACTTGTGTAA 702 40.88 MSFQDDDEESAAAAAAAEIRRRSSSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRATISRYKKACSDPSSAVSVSEANTQFYQQESAKLRAQIGNLQNLNSSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKRIAETERSQQNTRENNAMAATGTGNQGSVAPDLEVNHQQYDSTNYFPHHNHHISLQLV 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7911295 7920105 + Lsi02G008450.1 Lsi02g00845 655587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00845 233 SUPERFAMILY SRF-like 30 102 IPR036879 GO:0003677|GO:0046983
Lsi02g00845 233 ProSiteProfiles MADS-box domain profile. 29 89 IPR002100 GO:0003677|GO:0046983
Lsi02g00845 233 MobiDBLite consensus disorder prediction 1 33 - -
Lsi02g00845 233 ProSitePatterns MADS-box domain signature. 31 85 IPR002100 GO:0003677|GO:0046983
Lsi02g00845 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 38 85 IPR002100 GO:0003677|GO:0046983
Lsi02g00845 233 CDD MADS_MEF2_like 30 103 IPR033896 GO:0000977|GO:0045944
Lsi02g00845 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 29 225 - -
Lsi02g00845 233 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 29 225 - -
Lsi02g00845 233 Pfam K-box region 113 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi02g00845 233 PRINTS MADS domain signature 51 66 IPR002100 GO:0003677|GO:0046983
Lsi02g00845 233 PRINTS MADS domain signature 31 51 IPR002100 GO:0003677|GO:0046983
Lsi02g00845 233 PRINTS MADS domain signature 66 87 IPR002100 GO:0003677|GO:0046983
Lsi02g00845 233 SMART madsneu2 29 88 IPR002100 GO:0003677|GO:0046983
Lsi02g00845 233 Gene3D - 41 106 IPR036879 GO:0003677|GO:0046983
Lsi02g00845 233 ProSiteProfiles K-box domain profile. 115 199 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00205 Lsi02g00845 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00845 Lsi-Chr2:7911295 Lsi08g00034 Lsi-Chr8:849912 1.37E-79 dispersed
Lsi05g00375 Lsi-Chr5:4734847 Lsi02g00845 Lsi-Chr2:7911295 2.36E-12 transposed
Lsi05g00405 Lsi-Chr5:5119275 Lsi02g00845 Lsi-Chr2:7911295 2.14E-10 transposed
Lsi01g00205 Lsi-Chr1:1920957 Lsi02g00845 Lsi-Chr2:7911295 3.44E-46 wgd
Lsi10g01545 Lsi-Chr10:19862865 Lsi02g00845 Lsi-Chr2:7911295 1.00E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24791 PF01486 K-box 1.80E-12 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00845 K09264 - csv:101205366 337.035