Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00848 ATGGGACTTGTGTATCAATCAATGCTGTCAAACAATCATAACAACAGTCCTCCTACTCCCAGAACCAGATTGGAAAGGCTTCTTAGGGAAAGAGAGCTCAGGAGATCAAACCGGTCTTCCTCTCTCAATGAAGAAGCACGAGATGGTTACAGTCTGGGAGAAGTCAACAGTTACGATCTCTTCACATATGCTGGTGATAGTTGTGGGTCATTTAACGAGGAAGAGGTCTTAGAAGGGATATCAGTGGTAAAAGATATCTTTGATGGATTCCAAAGGCCAGAAGGGAGGACTTCTAAGCAACGCCTTCTAGTTGTAGCAAACAGGTTACCTGTGTCTGCTGTTAGGAAAGGGAAGGAGACATGGCATCTTGAAATTAGCGTCGGTGGTTTAGTTAGTGCACTTTTAGGACTAAAGGAGTTCGAGGCAAGATGGATCGGTTGGGCTGGTGTGAATGTACCTGATGAAGCAGGACAGAGAGCCCTAGAGAAAGCATTAGCAGAAAAGAAATGCATACCGGTCTTTCTTGATGAGGAGATTGTTCATCAGTATTACAATGGCTACTGTAACAACATCTTGTGGCCTCTATTTCATTATCTTGGTCTCCCACAAGAAGATCGCCTTGCAACAACCCGAAGTTTTCAGTCACAGTTTGATGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTTGTAAACAAATATTATGAAGAGGGAGATGTTGTTTGGTGTCATGACTATCACTTGATGTTTCTCCCAAAATGTCTTAAAGAGCACAATAATACGATGAAAGTTGGTTGGTTCCTTCACACCCCATTTCCATCCTCAGAAATACATAGAACTCTACCATCTCGTTCAGAGCTGTTGAGATCTGTTCTTGCAGCTGATTTGGTTGGGCATTTTGTTAGTGCCTGCACTCGTATTCTTGGATTGGAGGGTACTCCTGAAGGAGTAGAGGATCAAGGAAAACTGACTCGCATAGCTGCTTTTCCTATTGGAATAGATTCTGACCGATTCATTCGAGCTCTTAAACTCCCTCAAGTCCAGGATCACATTAAAGAACTACAAGAAAGATTTGCAGGACGAAAGGTAAGAGTTTCCTTTCCTTCTACTCCTAAACATTCCCATTTCCCTATCACTTCCATTGCTGTAATGCTGGGTGTTGATCGTCTTGATATGATTAAGGGAATACCCCAAAAGATTTTGGCATTTGAAAAATTTCTTGAAGAAAATCCAAAGTGGCGTGATAAAGTAGTTTTGCTGCAAATTGCAGTGCCAACAAGGACAGATGTTCCCGAATATCAAAAGCTAACGAGTCAGGTTCATGAGATTGTCGGGCGAATTAATGGGAGATTTGGCACTCTTAGTGCAGTTCCAATACATCATCTGGATCGTTCACTTGACTTCCATGCATTATGTGCTTTATATGCGGTCACCGATGTGGCACTAGTTACATCTTTGAGAGATGGAATGAATCTTGTGAGCTATGAGTTTGTTGCCTGCCAAGCTTCCAAGAAAGGTGTTCTTATTCTAAGTGAGTTTGCAGGTGCAGCACAGTCATTAGGTGCCGGTGCTATTTTAGTTAATCCATGGAATATCACTGAAGTTGCTGTTTCAATTGGTTATGCTTTGAATATGCCAGCTGACGAAAGAGAAAGGCGACACCATCATAACTTCATGCACGTTACAACTCACACATCCCAAGAATGGGCTGCAACATTTGTGAGCGAACTCAACGACACCATAGTTGAAGCTCAGATCAGAACCAGACAGATACCACCTTTTCTTCCAATTAGAGAAGCAGTGAACTGTTATTCTCGCTCACATAATCGATTGGTTATTCTGGGTTTCAATGCTACCTTAACAGAAGCAGTTGATGCCCTTGGAAGAAGATATGGCCAAATAAGAGACATGGATCTTAAAGTACATCCAGATGTGAGAGAGCCCTTGAAGAAGCTTTGCGATGACCAGAATACTACAGTGGTTGTCCTCAGTGGGAGTGACAGAAGTGTCCTAGATGATAATTTCGGCGATTACAACATGTGGTTGGCAGCAGAAAATGGTATGTTCTTACGTCCGACAAAGGGCGAATGGATGACGACAATGCCTGAAAATTTACATATGGACTGGGTTGAGAGTGTTAAGCATGTTTTCGAGTATTTTACTGAAAGAACACCAAGATCTCATTTCGAGCTTCGCGAAACTTCACTGGTGTGGAACTACAAATATGCAGATGTGGAGTTTGGAAGACTGCAAGCGAGGGACTTGTTGCAGCATCTATGGACTGGTCCAATCTCAAATGCATCAGTTGATGTTGTCCAAGGCAGTCGATCAGTTGAGGTTCGAGCAGTTGGTGTTACAAAGGGTGCTGCCATTGATCGAATATTGGGAGAAATAGTTCGTGATAAAGGCATAAACAAACCTATTGACTATGTTCTCTGTGTTGGACACTTCCTAACCAAGGATGAAGATGTCTATACATTTTTCGAACCCGACCTTCCTTCTGAAGTGCCACCTGCAGCAAAAACAACAGTCACCAATCCTTTCGGAGGAGTACCGGTGCCAAAGATCCCAAACAATGGAGTGCCACCAAGCAGGTCAGCACGCCTCAAGAAACAGCGCTCCCTTTCCATTTTAGAACGAAGAGCAAATAGCCATGGGAGTGCAGTGTTTTGGAGGCCTATAGTGCAGGATCGATTGTCGCTGCACGAGGGTTCATCTGTTCTTGATCTCAAGGGTGACGATTACTTCTCCTGCGCTGTGGGGCGGAAGCGATCCAATGCTAGATATCTTCTTGGTTCATCAGACGATGTTGTCACACTTGTAAAGGAGTTGTCAGAATGTTCAGAGTCAAGTTTGAGTTAG 2862 43.26 MGLVYQSMLSNNHNNSPPTPRTRLERLLRERELRRSNRSSSLNEEARDGYSLGEVNSYDLFTYAGDSCGSFNEEEVLEGISVVKDIFDGFQRPEGRTSKQRLLVVANRLPVSAVRKGKETWHLEISVGGLVSALLGLKEFEARWIGWAGVNVPDEAGQRALEKALAEKKCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANQMFADVVNKYYEEGDVVWCHDYHLMFLPKCLKEHNNTMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGHFVSACTRILGLEGTPEGVEDQGKLTRIAAFPIGIDSDRFIRALKLPQVQDHIKELQERFAGRKVRVSFPSTPKHSHFPITSIAVMLGVDRLDMIKGIPQKILAFEKFLEENPKWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLSAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAVSIGYALNMPADERERRHHHNFMHVTTHTSQEWAATFVSELNDTIVEAQIRTRQIPPFLPIREAVNCYSRSHNRLVILGFNATLTEAVDALGRRYGQIRDMDLKVHPDVREPLKKLCDDQNTTVVVLSGSDRSVLDDNFGDYNMWLAAENGMFLRPTKGEWMTTMPENLHMDWVESVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDLLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVRDKGINKPIDYVLCVGHFLTKDEDVYTFFEPDLPSEVPPAAKTTVTNPFGGVPVPKIPNNGVPPSRSARLKKQRSLSILERRANSHGSAVFWRPIVQDRLSLHEGSSVLDLKGDDYFSCAVGRKRSNARYLLGSSDDVVTLVKELSECSESSLS 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7945172 7953108 + Lsi02G008480.1 Lsi02g00848 655590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00848 953 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 55 365 - -
Lsi02g00848 953 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 382 944 - -
Lsi02g00848 953 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 382 944 IPR001830 GO:0003824|GO:0005992
Lsi02g00848 953 Gene3D Glycogen Phosphorylase B; 93 339 - -
Lsi02g00848 953 SUPERFAMILY HAD-like 611 942 IPR036412 -
Lsi02g00848 953 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 55 365 IPR001830 GO:0003824|GO:0005992
Lsi02g00848 953 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 100 581 - -
Lsi02g00848 953 Gene3D - 703 783 - -
Lsi02g00848 953 CDD HAD_TPP 611 831 - -
Lsi02g00848 953 Pfam Trehalose-phosphatase 637 832 IPR003337 GO:0003824|GO:0005992
Lsi02g00848 953 CDD GT20_TPS 101 578 IPR001830 GO:0003824|GO:0005992
Lsi02g00848 953 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 101 578 IPR012766 GO:0003825|GO:0005992
Lsi02g00848 953 Gene3D Glycogen Phosphorylase B; 340 562 - -
Lsi02g00848 953 Pfam Glycosyltransferase family 20 382 578 IPR001830 GO:0003824|GO:0005992
Lsi02g00848 953 Pfam Glycosyltransferase family 20 101 364 IPR001830 GO:0003824|GO:0005992
Lsi02g00848 953 Gene3D - 637 826 IPR023214 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00848 Lsi-Chr2:7945172 Lsi04g01978 Lsi-Chr4:26807945 0 dispersed
Lsi02g00848 Lsi-Chr2:7945172 Lsi06g01540 Lsi-Chr6:25744451 6.64E-113 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00848 K16055 - csv:101213690 1728.38