Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00851 ATGTTCTCCTGTCTTTTGCAAGCTCAGCTCCGATCTGGCCATGGCCTTTCCTGCACTTTTTTGGAGTTTACTAAGCGCCGGTTTATGCCTCCAAGGTTAAGACATGGAAGCCATAGTTGGTGTAAGATTGATGCAGATGAGGAACTTGAGGAAGGAGAGATCATCGGCGAGGACGACCTTGACTCGTCCAATTTGTCGGCGGCGATAGTGCATCAGCCTCACGCTCTTGAGCACTCTTGGACCTTTTGGTTCGATAATCCATCTGCTAAGTCCAAGCAAGCCACATGGGGTGCGTCTATCCGACCGATCTATACCTTCTCTACTGTTGAGGAGTTCTGGAGTGTTTACAACAATATTCATCATCCAAGCAAATTGGCGATGAGGGCAGATTTGTACTGCTTCAAACATAAAATTGAGCCTAAATGGGAAGATCCTGTTTGTGCGAATGGAGGGAAATGGACTGTAAACTTTTCAAGGGGCAAATCTGATAATGGCTGGCTATACACGCTGCTTGCTATGATCGGAGAACAGTTTGACTGTGGTGATGAAATTTGTGGAGCAGTTGTTAATGTTAGATCTGGGCAGGATAAAATATCGATCTGGACAAAGAATGCCACCAATGAAGCTGCGCAGGCGAGCATTGGAAAACAGTGGAAGGAGTTTCTTGATTACAATGACAGCATTGGCTTTATATTCCACGACGATGCAAAGAAATTCGACAGACATGCAAAGAATAAATATTCGCGAACAAAATCTCCGGCCGTAAAGCTATCGACTGGGCAGAGTAATGGGGATTCAGGGGCTGTTACCGCTACTGAAATCAATAATGGTGCCGATCCATATCAAGGATTTGGAGGGTTCTTCTGTGGCGATCGATACCTATTCTTGGCTCCACAAAGGCGCTTTCTCCTGCAGCAAAGAGCTCTGCAATGGCCTTCCCACCTCCAGGTTTGTAATCTGACGTTTACTTCTAGTTTAGTCATCAAACGGCACCGGAGATGCCTTCGAGTTGTAAAGGCGACGCACATAGATTACTGTATGCATAGAATAAATCTACTTCGGCACTTTGGAGTGAAACCCGTTCTTGTCTTTGATGGAGGTCTACTTCCAATGAAGAATGAGCAAGAAATCAAGCGTGCGAGGACGAGAAAAGAAAATCTTGCACGTGCAATAGAACATGAGACGAATGGAAATTCTTCTGCTGCCTATGAGTGTTACCAGAAGGCTGTTGATATTACACCTTCGATCGCCCATGAATTAATTCAAGTGTTAAAGCGAGAGAATATATCATATGTTGTGGCACCTTATGAGGCAGATGCTCAGATGACCTTTTTGGCCATCAGCAATCAGGTTGATGCTGTTCTTACCGAGGACTCTGATCTAATACCGTTTGGCTGTCCAAGGATTATCTTTAAAATGGACAAATTTGGACAAGGAGTTGAGTTTCGTTACGACATGTTACAAAAGAACAAGGACTTGAATTTTGCTGGATTTACAAAACAGATGGTTCTTGAAATGTGCATTTTGAGTGGTTGTGATTATTTGCCGTCATTGCCAGGAATGGGACTTAAAAGGGCTCATGCACTTGTCAAAAAATTTTTAAGTTATGATAAGGTGATTAGACACTTGAGGTACAGCACAATTTCAGTTCCTCATCTAAGCAGTAACTTAACATATTATACATCGATACCACAACAAATAGCTAAAGGTATAGCAGAAGGTGATATCGATCCGTGTACTAATTTACCATTCCAGGAGCAGAATATCAACACCGGAGTCGTGCATGAAAGACCTTACAAATTAAAAGAATTTAACGCTGAAAGTGTAAAGAAAAAGTTGGATTTACCTGTGCAGAAGAATGTCCTTACGAAATACTTTTGTATCCGGGAAAATTTGAAATCCATTCTTTTCATCCTTTATTGCATTTGCTTAACTCTAGTTTCAAACATTATGCTTCATGTACTAGGCAGAGGCTTTGCTTCTCTCGAGGCAAAGAGAAAATTTAGGGCGCCAAAACAATCAGCTAATCAACCAAGCTTAAGGGATGGCTCCTCAATTAGTGCCGAGGGGCCGGTTGGTCCTAAAGATAGTTGCTCGCCAGTTTCTACCAATCACTGTGAAAATGTAGAAGGCTGTCTATCTACTTATCCTGTAAGAAATGATAATGCAGATGGATTTCCTCTTTCTGATTCTTGCAATCAGAATATGGTCAATTATAAAATGGAAGAAGCGGAGCATATTTTACTACAGCAACACACCCAATCAATTCATAAGCCTTGTGTAACTCTGCATAAGAGACCCGATTCTGAGAAGTTTCCTGATACAACTGGAGAAAAAGCTAGGAAAGAGAATAAAAGGGTCATTGTAAGGAGTTCTTACTTCAAGCATAAGCCAGAAAGCAATGATGAACAGGAGAACAACCAAAAACTTTCTGACCAGAAAAATGCAGATGCTGCTATGCATGAGATAACCACTCCCGAGGCCGCCTCTATTATTAGTAATTCTTGTGACGGTTCAATCACTAAAAGGAAAGCCTCTTCAAATGAAAGCATTCAAATGGACAATGTCAAAACTAAGCATTTGCGTAAGGATACATTGCAACCCGATCATGGTAAGTGTTTAGTAAAAGCTTATTGCACACTATTGAGACTTTTGGGAACTGGGTTGAAAATTTTGTTTTCAGCTGATATAAATGAAACAGTATTGGAGACAAAAACTGAAGAAGGGAAATTTGGATCCAACATTTCTCATTTAAGTCATTACTCAGACATAGCAGAGAAATCAATGGAACGATTTGTTTCAGTAATATCATCATTTCGATTTGCTTCGGGTTCTAGAGCCAGTGGTCTCCGAGCCCCTTTGAGAGATGTTCAGAACAGCAATACCAATAGGTCTACTGCTGCAATGGACCTCAGCCAATTTGCTTATGTTCCAAATAAGCACAGGAATCCCTTGCCATTCCGAAAAGGAAGACGATGA 2979 41.49 MFSCLLQAQLRSGHGLSCTFLEFTKRRFMPPRLRHGSHSWCKIDADEELEEGEIIGEDDLDSSNLSAAIVHQPHALEHSWTFWFDNPSAKSKQATWGASIRPIYTFSTVEEFWSVYNNIHHPSKLAMRADLYCFKHKIEPKWEDPVCANGGKWTVNFSRGKSDNGWLYTLLAMIGEQFDCGDEICGAVVNVRSGQDKISIWTKNATNEAAQASIGKQWKEFLDYNDSIGFIFHDDAKKFDRHAKNKYSRTKSPAVKLSTGQSNGDSGAVTATEINNGADPYQGFGGFFCGDRYLFLAPQRRFLLQQRALQWPSHLQVCNLTFTSSLVIKRHRRCLRVVKATHIDYCMHRINLLRHFGVKPVLVFDGGLLPMKNEQEIKRARTRKENLARAIEHETNGNSSAAYECYQKAVDITPSIAHELIQVLKRENISYVVAPYEADAQMTFLAISNQVDAVLTEDSDLIPFGCPRIIFKMDKFGQGVEFRYDMLQKNKDLNFAGFTKQMVLEMCILSGCDYLPSLPGMGLKRAHALVKKFLSYDKVIRHLRYSTISVPHLSSNLTYYTSIPQQIAKGIAEGDIDPCTNLPFQEQNINTGVVHERPYKLKEFNAESVKKKLDLPVQKNVLTKYFCIRENLKSILFILYCICLTLVSNIMLHVLGRGFASLEAKRKFRAPKQSANQPSLRDGSSISAEGPVGPKDSCSPVSTNHCENVEGCLSTYPVRNDNADGFPLSDSCNQNMVNYKMEEAEHILLQQHTQSIHKPCVTLHKRPDSEKFPDTTGEKARKENKRVIVRSSYFKHKPESNDEQENNQKLSDQKNADAAMHEITTPEAASIISNSCDGSITKRKASSNESIQMDNVKTKHLRKDTLQPDHGKCLVKAYCTLLRLLGTGLKILFSADINETVLETKTEEGKFGSNISHLSHYSDIAEKSMERFVSVISSFRFASGSRASGLRAPLRDVQNSNTNRSTAAMDLSQFAYVPNKHRNPLPFRKGRR 992
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7981656 7995789 - Lsi02G008510.1 Lsi02g00851 655593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00851 992 MobiDBLite consensus disorder prediction 670 700 - -
Lsi02g00851 992 CDD PIN_EXO1 342 489 IPR044752 GO:0046872
Lsi02g00851 992 MobiDBLite consensus disorder prediction 764 817 - -
Lsi02g00851 992 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 445 465 IPR006084 -
Lsi02g00851 992 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 503 518 IPR006084 -
Lsi02g00851 992 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 360 379 IPR006084 -
Lsi02g00851 992 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 424 441 IPR006084 -
Lsi02g00851 992 Pfam Eukaryotic initiation factor 4E 76 227 IPR001040 GO:0003723|GO:0003743|GO:0006413
Lsi02g00851 992 Gene3D - 498 560 - -
Lsi02g00851 992 PANTHER EXONUCLEASE 1 331 962 IPR032641 GO:0006281|GO:0035312
Lsi02g00851 992 SUPERFAMILY eIF4e-like 70 245 IPR023398 -
Lsi02g00851 992 SMART xpgineu 425 495 IPR006086 GO:0004518
Lsi02g00851 992 MobiDBLite consensus disorder prediction 764 810 - -
Lsi02g00851 992 SMART HhH_4 500 533 IPR008918 GO:0003677|GO:0003824
Lsi02g00851 992 Gene3D - 322 497 - -
Lsi02g00851 992 SUPERFAMILY PIN domain-like 336 513 IPR029060 -
Lsi02g00851 992 ProSitePatterns Eukaryotic initiation factor 4E signature. 130 153 IPR019770 GO:0003723|GO:0003743|GO:0005737|GO:0006413
Lsi02g00851 992 Pfam XPG I-region 428 513 IPR006086 GO:0004518
Lsi02g00851 992 Pfam XPG N-terminal domain 330 385 IPR006085 GO:0004518
Lsi02g00851 992 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 499 551 IPR036279 -
Lsi02g00851 992 ProSitePatterns XPG protein signature 1. 358 372 IPR019974 GO:0016788
Lsi02g00851 992 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 331 962 IPR006084 -
Lsi02g00851 992 Gene3D RNA Cap, Translation Initiation Factor Eif4e 66 249 IPR023398 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00221 Lsi-Chr2:1848383 Lsi02g00851 Lsi-Chr2:7981656 1.77E-48 dispersed
Lsi02g00851 Lsi-Chr2:7981656 Lsi09g01200 Lsi-Chr9:19231830 2.28E-67 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00851 K10746 - csv:101214177 1003.82