Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00857 ATGGACAAGAATCGGAGTGGAGAAAGACGAATGGCCGCGTTTTCTTCTTTGGCGGATAGTAATTCTAGGGCTCGTCCTAGCGCCACCACTAGCACCGACAACAGACTTGCTGCACTTGTGCAATACAATGCCGATGCTGGACTTTTGAACAAGTTTGAGCTCTCGGATGCATCTGGTGAGTCTTTTAACTATTCCAGATCAGTTCTTGAAGCTCCTATATCTGTACCCGAAGAACAAATTACTGCCTATTTGTCTAAGATTCAGAGGGGTGGGTTCGTTCAACCCTTTGGTTGTTTGCTTGCCATTGAAGAATCTAGTTTTAAGATTCTTAGCTTTAGTGAGAATTGTTTTGAATTACTGGGGCTTAATGATCAATTTGGATCGGCACAGGGAAAGGGTCTGATTGGGGTTGATATGAGAGCTCTGTTTACGCCTTCCTCCGGTGCTTCTTTGGCCAAAGCGGCTTCATCCAGGGAGATTTCACTGTTGAACCCTGTTTGGGTCTATTCTAGGACTACCCAGAAGCCATTCTATGCTATATTGCACAGAATTGATGTGGGGATTGTAGTTGATTTGGAGCCTGCACGGTCTGTTGATCCTGCATTGTCGCTTGCAGGTGCTGTGCAGTCACAGAAGCTTGCGGTTAGAGCGATTTCCAGGTTGCAGGCTCTACCTAGTGGTGATATTGGTGTTCTATGTGATACAGTTGTTGAAGATGTTCAAAAGCTTACAGGGTATGATAGAGTGATGGTGTATAAGTTCCATGATGACGAACATGGTGAAGTAGTGTCAGAAATCAGAAGGTCAGACTTAGAGCCATACCTCGGTTTGCATTATCCTGCCATTGATATACCTCAAGCGGCTCGTTTTTTGTTCAAGCAGAACCGTGTCAGGATGATTTGTGACTGCCACACAAAGCCTGTGCAGGTCATTCAAAGCGATGAACTAAAGCAGCCTCTTTGTTTGGTGAATTCAACACTAAGAGCACCACATAGCTGTCATTTGCAATACATGGCAAATATGGGTTCCTTAGCTTCATTAGCGATGGCAGTAATCATGAACAGTGATGACTCACCAACAAGGCTATGGGGTCTGGTAGTGTGCCACCATACGTCTCCTCGATATGTCCCTTTCCCACTTCGTTATGCCTGTGAGTTTCTCATGCAGGCGTTCGGGCTGCAGCTTTACATGGAGCTTCAATTGGCATTACAATTAACAGAGAAAAAGATCCTCAAGACACAAACTTTACTTTGTGACATGCTTCTCCGAGGCTCCCCATATGCATTGCTGAGTCGGTCTCCTAGTATAATGGATCTCGTGAAGTGCGATGGTGCTGCACTGTACTATAACGGGGCATGTTGTTTATTAGGTGTAACTCCAACCGAAGCACAAGTCAAAGATCTTGCAGAGTGGGTGCTCAATAATCATGGGGATTCTACAGGGCTGAGCACGGATAGTTTGGCTGATGCTGGCTACCCTGAAGCTGCTTCACTAGGTGATGCGGTCTGTGGTATGGCAGCTGCAAGATTCACTTCAAAGGATTTCTTATTCTGGTTCAGGTCCCATGTTGCAAAGGAAATTCAGTGGGGAGGAGCCAAGCATCATCCAGATGATAAGGATGATTGTGGAAGAATGCACCCGAGATCATCATTTAAAGCATTTCTTGAAGTTGCAAAGAGTAGAAGTTTGTCTTGGGAAGTTCAAGAAATAAATGCCATTCACTCATTGCAGCTTATAATGAGGGAGTCTTTTCCAAACACGAGGGACAGTGATTCAAAGGCGGAAAATTATGTCCAGTTGAGTGATGTTGAGATCCAGGATATCAATGAACTCAGTTCAGTAGCTTGTGAAATGGTTAGGTTGATCGAAACAGCAACTGTTCCAATTTTTGGGGTTGACTCAACGGGTTTGATCAATGGATGGAATGCTAAAATTTCTGAACTTGTGGGATTACAAACTGGAGAAGCTTTGGGGAAATCTCTGGTTAATGAAATTGTTCATGAAGATTCATGTGGAACTGTGGAAGTTTTGCTTTCCTCTGCTCTTCAAGGTAAGGAAGACAAAAATGTGGAGTTAAAACTGAGAAGTTTTGGAACTGATAAAGAAAAGTCTAACGTGTATATTGTAGTTAATGCTTGCACAAGTAGAGATTACACAAACAAAGTTGTTGGAGTTTGCTTTGTTGGACAAGATCTTACATCCGAGAAAGGTGTGATGGATAAATTTATCCGTCTGCAGGGAGATTATAAGACTATTATTGAAAGTCTGAGTCCATTAATTCCTCCAATGTTTGTTTCGGACGAGAATGGTTACTGCTGTGAATGGACTGCAGCCATGGAAAAACTTACTGGTTGGAGGAAAAATGAAGTTATAGGAAAAATGCTAGCTGGGGAGATCTTTGGGAATTTTTGTAGGTTGAAAGGTTTAGCTACCCTCACTAGGTTTATGATTCTATTATATCAAGGTATTAGTGGTGAAGTAACCGAAAAGTTTCCATTAGGATTTTTCAACAAGGATGGGAATTATGTAGATGTGCTATTAACATCGAACAAGAGAACTGATGCTGAAGGAAATGCCATTGGTTGTATCTGCTTCCTGCAAATTGTTCAACCCAATTTACATGGGGTCTTAGAAGGACTTGGGACGGGTGATAGAGAGGGCATTTTGCAGCATAAGGAGTTGAGCTTCTTAAAGCATGAGATGAAAAATCCTTTAAATGGCCTCAGATTTACTCATGAACTCCTTGTAAATTCTGGCATTACGGAAAACCAGAAACTTTTCCTTGATACTAGTGATGCATGCGAGAGACAAATCATGACAATCATACAGGATATGGACTTCAGAAGTTTAGAAGGAGGCCAAGTAGAGATAAACAGAGAAGAATTTCTCCTCGGGAGTGTTCTGGATGCCATTATCTGTCAAATCATGATTGTTGTCAGAGAGAGGAACATTCAACTTTTTCATGAAATTCCAGAAGAAATCAAAACTTTAACTCTTTGTGGCGATCAAATTAAGCTTCAGATGGTTTTGTCAGATTTCTTACTTAACATAGTGCAGTACGCGCCTGTTCTGGATGGTTGGGTTGAAATCAAAATTTCTTCTGGTTTGAAGCTTATACAAGATGGAAATGAACATATTCACTTGCAGATCAGAATGTCACATCCAGGTCAAGGTTTGCCTCCTGAACTAATCCAAGATATGGTTGGAGGAGGACAACAGGGGACTTCAGAGCAAGGCCTGGCCCTAAACCTGTCACGTAGACTTCTCAATAAATTGAACGGTAATGTCCGCTATGTTAGAGAGCAAACCAAATGCTACTTCCTCATCGATCTCGAACTCAAGTTAAGGCGCTCAAGGGGGTCGATGGAAGCTACTACGAGCCAAAAGGACTTGAGTGTCTCCTATCGAGCTGATGAACACTTGTACAAATAG 3432 42.45 MDKNRSGERRMAAFSSLADSNSRARPSATTSTDNRLAALVQYNADAGLLNKFELSDASGESFNYSRSVLEAPISVPEEQITAYLSKIQRGGFVQPFGCLLAIEESSFKILSFSENCFELLGLNDQFGSAQGKGLIGVDMRALFTPSSGASLAKAASSREISLLNPVWVYSRTTQKPFYAILHRIDVGIVVDLEPARSVDPALSLAGAVQSQKLAVRAISRLQALPSGDIGVLCDTVVEDVQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRVRMICDCHTKPVQVIQSDELKQPLCLVNSTLRAPHSCHLQYMANMGSLASLAMAVIMNSDDSPTRLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLALQLTEKKILKTQTLLCDMLLRGSPYALLSRSPSIMDLVKCDGAALYYNGACCLLGVTPTEAQVKDLAEWVLNNHGDSTGLSTDSLADAGYPEAASLGDAVCGMAAARFTSKDFLFWFRSHVAKEIQWGGAKHHPDDKDDCGRMHPRSSFKAFLEVAKSRSLSWEVQEINAIHSLQLIMRESFPNTRDSDSKAENYVQLSDVEIQDINELSSVACEMVRLIETATVPIFGVDSTGLINGWNAKISELVGLQTGEALGKSLVNEIVHEDSCGTVEVLLSSALQGKEDKNVELKLRSFGTDKEKSNVYIVVNACTSRDYTNKVVGVCFVGQDLTSEKGVMDKFIRLQGDYKTIIESLSPLIPPMFVSDENGYCCEWTAAMEKLTGWRKNEVIGKMLAGEIFGNFCRLKGLATLTRFMILLYQGISGEVTEKFPLGFFNKDGNYVDVLLTSNKRTDAEGNAIGCICFLQIVQPNLHGVLEGLGTGDREGILQHKELSFLKHEMKNPLNGLRFTHELLVNSGITENQKLFLDTSDACERQIMTIIQDMDFRSLEGGQVEINREEFLLGSVLDAIICQIMIVVRERNIQLFHEIPEEIKTLTLCGDQIKLQMVLSDFLLNIVQYAPVLDGWVEIKISSGLKLIQDGNEHIHLQIRMSHPGQGLPPELIQDMVGGGQQGTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRSRGSMEATTSQKDLSVSYRADEHLYK 1143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8039562 8045713 - Lsi02G008570.1 Lsi02g00857 655599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00857 1143 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 228 389 IPR016132 -
Lsi02g00857 1143 ProSitePatterns Phytochrome chromophore attachment site signature. 328 337 IPR013516 -
Lsi02g00857 1143 TIGRFAM sensory_box: PAS domain S-box protein 621 736 IPR000014 -
Lsi02g00857 1143 SMART gaf_1 228 409 IPR003018 GO:0005515
Lsi02g00857 1143 PRINTS Phytochrome signature 143 165 IPR001294 GO:0006355|GO:0009584
Lsi02g00857 1143 PRINTS Phytochrome signature 243 262 IPR001294 GO:0006355|GO:0009584
Lsi02g00857 1143 PRINTS Phytochrome signature 617 633 IPR001294 GO:0006355|GO:0009584
Lsi02g00857 1143 PRINTS Phytochrome signature 547 565 IPR001294 GO:0006355|GO:0009584
Lsi02g00857 1143 PRINTS Phytochrome signature 328 349 IPR001294 GO:0006355|GO:0009584
Lsi02g00857 1143 PRINTS Phytochrome signature 514 533 IPR001294 GO:0006355|GO:0009584
Lsi02g00857 1143 PRINTS Phytochrome signature 710 727 IPR001294 GO:0006355|GO:0009584
Lsi02g00857 1143 PRINTS Phytochrome signature 429 449 IPR001294 GO:0006355|GO:0009584
Lsi02g00857 1143 PRINTS Phytochrome signature 730 750 IPR001294 GO:0006355|GO:0009584
Lsi02g00857 1143 PRINTS Phytochrome signature 636 651 IPR001294 GO:0006355|GO:0009584
Lsi02g00857 1143 PIRSF Phytochrome_conventional 14 1122 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Lsi02g00857 1143 ProSiteProfiles PAS repeat profile. 748 800 IPR000014 -
Lsi02g00857 1143 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1001 1111 IPR003594 -
Lsi02g00857 1143 Pfam GAF domain 228 399 IPR003018 GO:0005515
Lsi02g00857 1143 SUPERFAMILY GAF domain-like 208 395 - -
Lsi02g00857 1143 ProSiteProfiles PAC domain profile. 688 744 IPR000700 -
Lsi02g00857 1143 MobiDBLite consensus disorder prediction 15 30 - -
Lsi02g00857 1143 CDD HisKA 894 949 IPR003661 GO:0000155|GO:0007165
Lsi02g00857 1143 SUPERFAMILY PYP-like sensor domain (PAS domain) 87 196 IPR035965 -
Lsi02g00857 1143 CDD PAS 625 732 IPR000014 -
Lsi02g00857 1143 Pfam Phytochrome region 412 586 IPR013515 GO:0006355|GO:0009584
Lsi02g00857 1143 SUPERFAMILY GAF domain-like 407 584 - -
Lsi02g00857 1143 MobiDBLite consensus disorder prediction 1 30 - -
Lsi02g00857 1143 Pfam PAS fold 617 731 IPR013767 GO:0006355
Lsi02g00857 1143 Pfam PAS fold 748 867 IPR013767 GO:0006355
Lsi02g00857 1143 Gene3D PAS domain 762 872 - -
Lsi02g00857 1143 Gene3D - 404 577 IPR043150 -
Lsi02g00857 1143 SUPERFAMILY PYP-like sensor domain (PAS domain) 620 728 IPR035965 -
Lsi02g00857 1143 Gene3D PAS domain 86 331 - -
Lsi02g00857 1143 SUPERFAMILY PYP-like sensor domain (PAS domain) 762 864 IPR035965 -
Lsi02g00857 1143 SMART HKATPase_4 1001 1113 IPR003594 -
Lsi02g00857 1143 Gene3D PAS domain 615 736 - -
Lsi02g00857 1143 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 954 1111 IPR036890 -
Lsi02g00857 1143 Gene3D - 931 1107 IPR036890 -
Lsi02g00857 1143 Pfam PAS fold 82 195 IPR013654 GO:0006355
Lsi02g00857 1143 PANTHER PHYTOCHROME E 36 1119 - -
Lsi02g00857 1143 CDD PAS 759 867 IPR000014 -
Lsi02g00857 1143 CDD HATPase_Phy-like 1001 1113 IPR044767 -
Lsi02g00857 1143 PANTHER TWO-COMPONENT HISTIDINE KINASE 36 1119 - -
Lsi02g00857 1143 Pfam His Kinase A (phospho-acceptor) domain 894 953 IPR003661 GO:0000155|GO:0007165
Lsi02g00857 1143 SMART pas_2 747 817 IPR000014 -
Lsi02g00857 1143 SMART pas_2 616 683 IPR000014 -
Lsi02g00857 1143 Gene3D - 209 560 IPR029016 -
Lsi02g00857 1143 SMART HisKA_10 889 953 IPR003661 GO:0000155|GO:0007165
Lsi02g00857 1143 ProSiteProfiles Histidine kinase domain profile. 896 1115 IPR005467 -
Lsi02g00857 1143 ProSiteProfiles PAS repeat profile. 614 685 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00857 Lsi-Chr2:8039562 Lsi05g01420 Lsi-Chr5:22155641 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00857 K12123 - csv:101214900 2094.32