Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00878 ATGGTTACAATGGCAGTCTCAACAATGGCTCTCTCTTCTCCGTCGCTTGCCGGAAAGGCAGTGAAACTCACTCCCTCTTCATCGGAGCTTCTCGGCAATGGCGGCAGAGTCAGCATGAGGAAATCTGCCTCCAAATCTGTTTCTTCTGGAAGCCCTTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTCTCCGGCGAGCCTCCATCTTATCTCACCGGTGAGTTTCCTGGTGACTACGGCTGGGATACTGCCGGACTTTCTGCAGATCCCGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTCATTCACTCTAAGTGGGCTATGCTCGGGGCATTGGGTTGCGTGTTCCCAGAGCTTCTTTCCCGCAACGGCGTGAAGTTCGGAGAAGCAGTGTGGTTCAAGGCCGGTTCGCAGATCTTCAGCGAAGGTGGGCTCGACTACTTAGGGAACCCAAGCTTGATTCACGCCCAAAGCATTCTAGCCATTTGGGCCTCTTAG 504 54.17 MVTMAVSTMALSSPSLAGKAVKLTPSSSELLGNGGRVSMRKSASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSKWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAS 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8302534 8306562 - Lsi02G008780.1 Lsi02g00878 655620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00878 167 Pfam Chlorophyll A-B binding protein 69 163 IPR022796 -
Lsi02g00878 167 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC 4 166 - -
Lsi02g00878 167 Gene3D Chlorophyll a/b binding protein domain 60 167 - -
Lsi02g00878 167 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 166 IPR001344 GO:0009765|GO:0016020
Lsi02g00878 167 SUPERFAMILY Chlorophyll a-b binding protein 52 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00878 Lsi-Chr2:8302534 Lsi10g01537 Lsi-Chr10:19772142 1.42E-104 dispersed
Lsi02g00878 Lsi-Chr2:8302534 Lsi02g00879 Lsi-Chr2:8306933 2.11E-111 tandem
Lsi01g00172 Lsi-Chr1:1668479 Lsi02g00878 Lsi-Chr2:8302534 7.59E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00878 K08912 - cpap:110819729 302.753