Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00879 ATGGCGGCCTCAACAATGGCTTTGTCCTCGCCCTCACTCGCTGGAAAGGCGGTGAAACTCACGCCCTCCTCCCCTGAGCTTCTCGGCAACGGTAGAGTCAGCATGAGGAAATCCGCCTCCAAGTCGGTTTCTTCTGGAAGCCCATGGTACGGACCCGACCGTGTTAAGTATTTGGGACCATTCTCCGGCGAGTCTCCGTCATATCTTACCGGAGAATTCCCCGGTGACTACGGCTGGGATACTGCCGGACTTTCCGCAGACCCTGAGACCTTCGCCAAGAACCGTGAGCTTGAAGTCATCCACTCTAGGTGGGCTATGTTGGGAGCATTGGGCTGCGTTTTTCCAGAGCTTCTTTCCCGCAATGGCGTGAAGTTCGGAGAAGCGGTGTGGTTCAAGGCCGGTTCACAGATCTTCAGTGAAGGTGGGCTCGATTACTTAGGGAACCCGAGCTTGATCCACGCCCAAAGCATTCTAGCCATTTGGGCCTCCCAGGTGACCGACCCGATTTATCCAGGTGGGAGCTTTGACCCGTTGGGCCTTGCAGACGACCCAGAAGCCTTTGCAGAGCTGAAAGTGAAGGAGCTGAAGAATGGGAGATTGGCCATGTTCTCAATGTTTGGATTCTTCGTTCAAGCCATCGTGACAGGAAAGGGCCCACTTGAGAATCTTGCTGACCATCTTGCTGACCCAGTCAACAACAATGCTTGGGCTTATGCTACCAACTTTGTTCCTGGAAAA 738 54.07 MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSASKSVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8306933 8308894 - Lsi02G008790.1 Lsi02g00879 655621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00879 246 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 164 246 IPR001344 GO:0009765|GO:0016020
Lsi02g00879 246 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 165 IPR001344 GO:0009765|GO:0016020
Lsi02g00879 246 Pfam Chlorophyll A-B binding protein 66 212 IPR022796 -
Lsi02g00879 246 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC 164 246 - -
Lsi02g00879 246 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC 1 165 - -
Lsi02g00879 246 SUPERFAMILY Chlorophyll a-b binding protein 48 243 - -
Lsi02g00879 246 MobiDBLite consensus disorder prediction 28 47 - -
Lsi02g00879 246 Gene3D Chlorophyll a/b binding protein domain 56 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00879 Lsi-Chr2:8306933 Lsi10g01537 Lsi-Chr10:19772142 2.43E-166 dispersed
Lsi02g00878 Lsi-Chr2:8302534 Lsi02g00879 Lsi-Chr2:8306933 2.11E-111 tandem
Lsi02g00879 Lsi-Chr2:8306933 Lsi02g00880 Lsi-Chr2:8319931 6.52E-172 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00879 K08912 - cpap:110819729 467.618