Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00880 ATGATAACAATCTTCTGTTATTTAATAATTGAATCTCAACGGCTTTTATCATCACAACCGCAAGTAAGCAACTTCAGCTCTAACGGTAAACACATTTTCATTTCTGCAAAATTTTTAATTGTAATGGCGGCCTCAACAATGGCTCTCTCTTCTCCGTCGCTTGCTGGAAAGGCAGTGAAACTCACTCCCTCTTCGCCGGAGCTTCTCGACAATGGCGGCAGAGTCAGCATGAGGAAATCCTCCTCCAAATCTGTTTCTTCTGGTAGCCCTTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTCTCCGGCGAGCCTCCGTCTTATCTCACTGGTGAGTTTCCCGGTGACTATGGCTGGGATACTGCTGGACTTTCTGCAGATCCCGAGACCTTCGCTAAGAACCGTGAGCTTGAAGTCATTCACTCTAGGTGGGCCATGCTGGGAGCATTGGGCTGTGTGTTTCCGGAGCTTCTTTCCCGCAACGGCGTAAAGTTCGGAGAAGCAGTGTGGTTCAAGGCCGGTTCACAGATCTTCAGTGAAGGTGGGCTCGATTACTTTGGGAACCCGAGCTTGATCCACGCCCAAAGCATTCTAGCCATTTGGGCCTCCCAGGTGGTTCTCATGGGAGCCGTCGAGGGATACCGTATCGCCGGTGGCCCACTTGGGAAGGTGACCGACCCAATTTACCCGGGCGGGAGCTTTGACCCGTTAGGCCTTGCAGATGACCCGGAAGCCTTTGCAGAGCTGAAAGTGAAGGAGCTGAAGAATGGAAGGTTGGCCATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTGACTGGAAAAGGCCCACTTGAGAATCTTGCTGATCATCTTGCTGACCCAGTCAGCAATAATGCTTGGGCTTATGCTACCAACTTCGTTCCTGGAAAATGA 924 50.54 MITIFCYLIIESQRLLSSQPQVSNFSSNGKHIFISAKFLIVMAASTMALSSPSLAGKAVKLTPSSPELLDNGGRVSMRKSSSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYFGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGKVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVSNNAWAYATNFVPGK 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8319931 8321959 + Lsi02G008800.1 Lsi02g00880 655622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00880 307 Gene3D Chlorophyll a/b binding protein domain 98 300 - -
Lsi02g00880 307 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC 42 307 - -
Lsi02g00880 307 Pfam Chlorophyll A-B binding protein 107 273 IPR022796 -
Lsi02g00880 307 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 42 307 IPR001344 GO:0009765|GO:0016020
Lsi02g00880 307 SUPERFAMILY Chlorophyll a-b binding protein 90 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00172 Lsi-Chr1:1668479 Lsi02g00880 Lsi-Chr2:8319931 5.54E-176 dispersed
Lsi02g00880 Lsi-Chr2:8319931 Lsi10g01537 Lsi-Chr10:19772142 0 dispersed
Lsi02g00879 Lsi-Chr2:8306933 Lsi02g00880 Lsi-Chr2:8319931 6.52E-172 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00880 K08912 - cpap:110819729 515.768