Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00916 ATGGACGGCGGCGCTGGGAGGACGAAGGCGTCGAGTTCGAGCAATGGTGGCAGAACCCGCGTGGGAAAATACGAGTTGGGTAGAACCCTTGGCGAGGGTAACTTCGCCAAGGTCAAGTTTGCTCGGAACACCGAGACCGGTGACAACGTGGCGATCAAAATTCTTAACAAGGAGAAAGTTCTTAAGCATAAGATGATCAGTCAGATTAAACGCGAGATATCAACGATGAAATTAATTAGGCACCCAAATGTCATCCGTATGTTTGAGGTGATGGCTAGCAAGGCCAAAATATATATTGTGTTGGAGTTTGTCACCGGTGGGGAACTATTTGACAAGATTGTTAGTAGAGGCAGGATGAAGGAAGATGAAGCAAGAAAGTATTTCCAGCAACTTATTAATGCTGTGGATTATTGTCATAGCAGAGGTGTTTTTCACAGAGATCTAAAGCCAGAGAATTTGCTGCTTGATGCTAATGGCGTTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTACCTCAGCAAGTTCGGGAAGATGGATTACTGCACACAACATGTGGAACACCAAATTATGTTGCTCCAGAGGTGATCAATGATAAAGGCTATGATGGGGCAAAGGCTGACTTGTGGTCATGTGGTGTAATTCTTTTTGTTTTGATGGCTGGTTATTTACCCTTTGAAGATTCCAACCTGGTTGCGTTCCTTGAGTTTGGATTGCAAATTGTTCATATTGATGATGTTTTTATGTATGTTAGGAATGAGAATAGAATTACCATTCCAGAGGTCATCGAGAATGAATGGTTTAGAAAAGGTTACAAGCCACCCACTTTTGAACAAGCTGATATTACTCTTGATGATGTAGACGCTATCTTCAACGAAACAGGGGATTCAGGTAGTCTTGTTGTGGAAAGGAAAGAGGAAGGATCTAAAGCCCCTCTTGCGATGAATGCATTCGAGCTTATCTCTAAATCTCAAGGCCTCAACCTCAGTTCTCTTTTTGAGAAACAAATGGGGATTGTTAAACGGGAAACCAGGTTCACTTCCAGCCGACCTGCGAAAGAGATCCTTTCTAAAATTGAGGAAACTGCAGCACCTTTGGGTTTTGATGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGTGAAAAAACAGGTCGTAAAGGCCATTTATCAGTTGCAACAGAGATTTATGAGGTTGCTCCGTCACTGTACATGGTTGAGCTCCGCAAGGCTGGAGGAGATACATTAGAATTTCACAAGTTTTATAAGAACCTCAAGACTGGGCTGAAAGACATTGTCTGGAAACATGAAGAAGATCTGGACGAAGGAGATAGTGGTTCGTAA 1341 42.36 MDGGAGRTKASSSSNGGRTRVGKYELGRTLGEGNFAKVKFARNTETGDNVAIKILNKEKVLKHKMISQIKREISTMKLIRHPNVIRMFEVMASKAKIYIVLEFVTGGELFDKIVSRGRMKEDEARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINDKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVAFLEFGLQIVHIDDVFMYVRNENRITIPEVIENEWFRKGYKPPTFEQADITLDDVDAIFNETGDSGSLVVERKEEGSKAPLAMNAFELISKSQGLNLSSLFEKQMGIVKRETRFTSSRPAKEILSKIEETAAPLGFDVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKNLKTGLKDIVWKHEEDLDEGDSGS 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8801729 8810053 + Lsi02G009160.1 Lsi02g00916 655658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00916 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Lsi02g00916 446 Gene3D Kinase associated domain 1, KA1 308 434 - -
Lsi02g00916 446 CDD CIPK_C 315 430 - -
Lsi02g00916 446 Gene3D Transferase(Phosphotransferase) domain 1 104 274 - -
Lsi02g00916 446 SUPERFAMILY Protein kinase-like (PK-like) 21 277 IPR011009 -
Lsi02g00916 446 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Lsi02g00916 446 PANTHER SERINE/THREONINE KINASE 18 439 - -
Lsi02g00916 446 MobiDBLite consensus disorder prediction 1 23 - -
Lsi02g00916 446 Pfam Protein kinase domain 24 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00916 446 ProSiteProfiles Protein kinase domain profile. 24 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00916 446 SMART serkin_6 24 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00916 446 Pfam NAF domain 311 371 IPR004041 GO:0007165
Lsi02g00916 446 Gene3D Phosphorylase Kinase; domain 1 13 103 - -
Lsi02g00916 446 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 18 439 - -
Lsi02g00916 446 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00124 Lsi02g00916 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00916 Lsi-Chr2:8801729 Lsi10g01478 Lsi-Chr10:18893770 3.93E-150 dispersed
Lsi08g01043 Lsi-Chr8:19006299 Lsi02g00916 Lsi-Chr2:8801729 1.02E-110 dispersed
Lsi05g02172 Lsi-Chr5:28393444 Lsi02g00916 Lsi-Chr2:8801729 2.67E-180 transposed
Lsi06g00977 Lsi-Chr6:19746830 Lsi02g00916 Lsi-Chr2:8801729 1.68E-159 transposed
Lsi09g01528 Lsi-Chr9:23368852 Lsi02g00916 Lsi-Chr2:8801729 6.12E-35 transposed
Lsi10g00943 Lsi-Chr10:13851414 Lsi02g00916 Lsi-Chr2:8801729 4.05E-180 transposed
Lsi01g00124 Lsi-Chr1:1284522 Lsi02g00916 Lsi-Chr2:8801729 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83392 PF00069 Pkinase 2.80E-67 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00916 - - csv:101222334 789.645