Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g00916 | ATGGACGGCGGCGCTGGGAGGACGAAGGCGTCGAGTTCGAGCAATGGTGGCAGAACCCGCGTGGGAAAATACGAGTTGGGTAGAACCCTTGGCGAGGGTAACTTCGCCAAGGTCAAGTTTGCTCGGAACACCGAGACCGGTGACAACGTGGCGATCAAAATTCTTAACAAGGAGAAAGTTCTTAAGCATAAGATGATCAGTCAGATTAAACGCGAGATATCAACGATGAAATTAATTAGGCACCCAAATGTCATCCGTATGTTTGAGGTGATGGCTAGCAAGGCCAAAATATATATTGTGTTGGAGTTTGTCACCGGTGGGGAACTATTTGACAAGATTGTTAGTAGAGGCAGGATGAAGGAAGATGAAGCAAGAAAGTATTTCCAGCAACTTATTAATGCTGTGGATTATTGTCATAGCAGAGGTGTTTTTCACAGAGATCTAAAGCCAGAGAATTTGCTGCTTGATGCTAATGGCGTTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTACCTCAGCAAGTTCGGGAAGATGGATTACTGCACACAACATGTGGAACACCAAATTATGTTGCTCCAGAGGTGATCAATGATAAAGGCTATGATGGGGCAAAGGCTGACTTGTGGTCATGTGGTGTAATTCTTTTTGTTTTGATGGCTGGTTATTTACCCTTTGAAGATTCCAACCTGGTTGCGTTCCTTGAGTTTGGATTGCAAATTGTTCATATTGATGATGTTTTTATGTATGTTAGGAATGAGAATAGAATTACCATTCCAGAGGTCATCGAGAATGAATGGTTTAGAAAAGGTTACAAGCCACCCACTTTTGAACAAGCTGATATTACTCTTGATGATGTAGACGCTATCTTCAACGAAACAGGGGATTCAGGTAGTCTTGTTGTGGAAAGGAAAGAGGAAGGATCTAAAGCCCCTCTTGCGATGAATGCATTCGAGCTTATCTCTAAATCTCAAGGCCTCAACCTCAGTTCTCTTTTTGAGAAACAAATGGGGATTGTTAAACGGGAAACCAGGTTCACTTCCAGCCGACCTGCGAAAGAGATCCTTTCTAAAATTGAGGAAACTGCAGCACCTTTGGGTTTTGATGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGTGAAAAAACAGGTCGTAAAGGCCATTTATCAGTTGCAACAGAGATTTATGAGGTTGCTCCGTCACTGTACATGGTTGAGCTCCGCAAGGCTGGAGGAGATACATTAGAATTTCACAAGTTTTATAAGAACCTCAAGACTGGGCTGAAAGACATTGTCTGGAAACATGAAGAAGATCTGGACGAAGGAGATAGTGGTTCGTAA | 1341 | 42.36 | MDGGAGRTKASSSSNGGRTRVGKYELGRTLGEGNFAKVKFARNTETGDNVAIKILNKEKVLKHKMISQIKREISTMKLIRHPNVIRMFEVMASKAKIYIVLEFVTGGELFDKIVSRGRMKEDEARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINDKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVAFLEFGLQIVHIDDVFMYVRNENRITIPEVIENEWFRKGYKPPTFEQADITLDDVDAIFNETGDSGSLVVERKEEGSKAPLAMNAFELISKSQGLNLSSLFEKQMGIVKRETRFTSSRPAKEILSKIEETAAPLGFDVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKNLKTGLKDIVWKHEEDLDEGDSGS | 446 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 8801729 | 8810053 | + | Lsi02G009160.1 | Lsi02g00916 | 655658 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g00916 | 446 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 143 | 155 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi02g00916 | 446 | Gene3D | Kinase associated domain 1, KA1 | 308 | 434 | - | - | |
Lsi02g00916 | 446 | CDD | CIPK_C | 315 | 430 | - | - | |
Lsi02g00916 | 446 | Gene3D | Transferase(Phosphotransferase) domain 1 | 104 | 274 | - | - | |
Lsi02g00916 | 446 | SUPERFAMILY | Protein kinase-like (PK-like) | 21 | 277 | IPR011009 | - | |
Lsi02g00916 | 446 | ProSiteProfiles | NAF domain profile. | 309 | 333 | IPR018451 | GO:0007165 | |
Lsi02g00916 | 446 | PANTHER | SERINE/THREONINE KINASE | 18 | 439 | - | - | |
Lsi02g00916 | 446 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Lsi02g00916 | 446 | Pfam | Protein kinase domain | 24 | 229 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi02g00916 | 446 | ProSiteProfiles | Protein kinase domain profile. | 24 | 290 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi02g00916 | 446 | SMART | serkin_6 | 24 | 267 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi02g00916 | 446 | Pfam | NAF domain | 311 | 371 | IPR004041 | GO:0007165 | |
Lsi02g00916 | 446 | Gene3D | Phosphorylase Kinase; domain 1 | 13 | 103 | - | - | |
Lsi02g00916 | 446 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 18 | 439 | - | - | |
Lsi02g00916 | 446 | ProSitePatterns | Protein kinases ATP-binding region signature. | 30 | 53 | IPR017441 | GO:0005524 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi01g00124 | Lsi02g00916 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g00916 | Lsi-Chr2:8801729 | Lsi10g01478 | Lsi-Chr10:18893770 | 3.93E-150 | dispersed | |
Lsi08g01043 | Lsi-Chr8:19006299 | Lsi02g00916 | Lsi-Chr2:8801729 | 1.02E-110 | dispersed | |
Lsi05g02172 | Lsi-Chr5:28393444 | Lsi02g00916 | Lsi-Chr2:8801729 | 2.67E-180 | transposed | |
Lsi06g00977 | Lsi-Chr6:19746830 | Lsi02g00916 | Lsi-Chr2:8801729 | 1.68E-159 | transposed | |
Lsi09g01528 | Lsi-Chr9:23368852 | Lsi02g00916 | Lsi-Chr2:8801729 | 6.12E-35 | transposed | |
Lsi10g00943 | Lsi-Chr10:13851414 | Lsi02g00916 | Lsi-Chr2:8801729 | 4.05E-180 | transposed | |
Lsi01g00124 | Lsi-Chr1:1284522 | Lsi02g00916 | Lsi-Chr2:8801729 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83392 | PF00069 | Pkinase | 2.80E-67 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g00916 | - | - | csv:101222334 | 789.645 |