Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g00922 | ATGAAAAAGACAGCGAAAAATAATGGCGGTTTATTTGATCGTCCTTCTTCCTCTTCCCCCGTTTGTGAAAAAGGTCACCACTCACTCAGTGCATCTGGTGGCTCCCAGGCGTTTCTGGATCTTCAACTCTGTAGTTGTCTCAGTCGGAGAACTCTTCAAGAATCTGTAATCTGTGGGCCTGGAGGAGGAGGAGGAGGAGGAGGAGTTGGGTTCTTAGTTTCTGTAAGAATGAGGCTCTCTGCGGGTGGTTTTAGTCCTCAGGCTCAGGAAGATGATTCTGCTTTTGATGACTTTCCCATTCGATTCATACCCTTAACGTTATTGTTCTTCCTTTTTGGACCAATTGTGGAGACTTCGCATTTTTTACTCGTTTTTTTGCCTTCCGGTGGCCTTGGATTTTGCAGCGTAATGCTAGATTTATGCGAGAGAAGGGTCCTGAATTCCGAGCTTTGGCATGCGTGCGCGGGTCCTCTTGTTTCTCTGCCGGCTGTTGGCAGTCGCGTTGTTTATTTTCCTCAAGGTCATAGTGAGCAGGTTGCTGCATCTACCAATAAAGAGGTGGATGCCCAGATACCAAATTACCCGAGTTTACCGCCGCAGCTCATTTGTCAGCTTCACAACCTGACAATGCATGCAGATGCTGAGACAGATGAAGTATACGCTCAGATGACTCTGCAACCTTTGAGTGCTCAAGAATTGAAGGAAGCCTACCTTCCAGCCGAGTTGGGCACTCCAAGTAGGCAGCCAACGAATTATTTTTGCAAAACTTTGACAGCCAGTGATACCAGCACACATGGAGGTTTTTCTGTTCCTCGCCGTGCTGCTGAAAAAGTATTCCCTCCTCTGGTAAGTTCAATGCAGGACTTCTCCATGCAGCCCCCAGCCCAAGAGCTGATTGCGAGGGACCTACATGATAATGAGTGGAAATTTAGACATATATTTCGCGGCCAGCCTAAAAGACACCTTCTAACAACTGGATGGAGTGTCTTCGTGAGTGCTAAAAGACTTGTAGCGGGTGATGCTGTACTTTTTATCTGGAATGAAAAGAACCAATTACTCCTCGGAATTAGGCGTGCAAATCGGCCACAAACCGTGATGCCTTCATCTGTGTTGTCAAGCGATAGCATGCATTTAGGGCTTCTTGCTGCAGCATCTCATGCAGCTGCTACTATCAGTCGGTTTACAATATTTTTTAACCCAAGGGCTAGCCCTTCAGAGTTTGTCATACCACTGGCCAAATATGTGAAGGCAGTCTACCATACACGTGTTTCTGTTGGCATGCGCTTTAGGATGCTGTTTGAAACAGAAGAATCAAGTGTTCGTCGCTACATGGGTACAATCACTGGCATTAGTGACTTGGATCCTGTAAGATGGCAAAACTCACATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCGACAGCAGGAGAGCGACAGCCAAGAGTGTCCTTGTGGGAAATTGAACCACTGACAACATTTCCAATGTATCCATCACCGTTTCCACTTAGGCTAAAACGACCATGGCCAACTGGACTGCCTTCTTTTGGTACTTTTACTCTGTCTTCCCATTGCATCAAGGATAGTGACCTCGGAATGAATTCTCCATTCATGTGGCTACGGGGAGATAATAGCGATCGTGGCATCCAGTGTCTAAACTTTCAGGGAACTGGGGTCTCACCGTGGATGCAGCCGAGGCTTGATCCATCCATGATGGGCATGCAATCTGACATGTATCAAGCCATGGCTACTGCAGCTCTTCAGGAGATGAGGGCAATTGATTATTCCAAAATAGCACCTGCATCTGTTCTGCAATTCCAGCAGCCCCAAGGTCTTTCTTGTCAGTCTTCTACCTTAATGCAGCCTCAGATGTTGCATCAGTCTCAACCTCAGCAGGCGTTTCTACAATCTGTTCAAGAAAACCAGCAGCATTCTCAGTCTCAGTCTCAAGCTCAAGCTCAAGCTCAAACTCAGTCACATCATCTTCATTCACAATTGCAGCCCCAGCAATCATTCAATAATCAACAACAGCAGCATCAACAACAACCAAGGCAGGCACAGCCACTCGATCATCAGCAGATTCCTTGTACAATCCCTGCTATATCTCAGTTTGCTTCATGTTCTCAATCCCAGTCACCGTCACTGCAAACCGTCCCTTCCCTTTGCCAACAACCAAGTTTTTCTGATTCCAATGGTAACCCTGTAACTAGTCCTACTGTTTCCCCATTGCATAGCCTTGCGGGTTCATTTGTCCAAGATGACTCGTCTCAGCTGCTTAACCTTCAAAGAGCACATTCGGTAATTCCTTCAGCTGGTTGGCCATCAAAGAGAGCTGCTATCGATCCTCTCTGTACTGGAGCTTCTCAATATTTTCTACCTCAAGTGGAAATTTTGGGAACACCACAGAGTAGTATTTCTCAGAATACTGTTGCATTGCCACCCTTCCCTGGAAGGGAGTGCCCCATTGATGACCGAGACGAGGGTTCTGATCCACAAAACCATGTTTTATTTGGTGTGAATATAGAGTCTTCATCCCTTCTAATGCAGAATGGGATGTCAAACCTTAGGGGAGTCGGCAATGATAGCGTTTCTACAACTCTTCCTTTTTCTTCCAATTATATGAGCACTGCTGGAACCAATTTTTCTGTAAATCCAACCATGACATCCTCAAATTGCATCGATGAATCGGGTTTCCTGCAGTCTCATGAAAATGTGGGCCAAGTAAACCCACCCAACGGAACCTTTGTCAAGGTTCATAAATCGGGGACCTACAGTAGGTCGTTAGATATAACCAAATTCAACAGCTATCCTGAGCTACGCAGCGAGCTTGCTCGCATGTTTGGCCTAGAAGGCGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGACGTTCTTCTCCTTGGTGATGGCCCGTGGCCGGAGTTTGTAAACAGTGTGTGGTGTATCAAAATACTTTCACCAGAAGAAGTTCAGGACATGGGCAAACGAGGTTTAGAACTTCTGAACTCTGTGCCAATTCAGAGGCTCTCGAACAGCACCTGTGACGACTATGGTAGCCGTCAGGACTCGAGAAATTTGATTTCAGGGATAACTTCTGTTGGGCCTCTTGACTACTGA | 3138 | 46.56 | MKKTAKNNGGLFDRPSSSSPVCEKGHHSLSASGGSQAFLDLQLCSCLSRRTLQESVICGPGGGGGGGGVGFLVSVRMRLSAGGFSPQAQEDDSAFDDFPIRFIPLTLLFFLFGPIVETSHFLLVFLPSGGLGFCSVMLDLCERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAQIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLSAQELKEAYLPAELGTPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLVSSMQDFSMQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAASHAAATISRFTIFFNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFGTFTLSSHCIKDSDLGMNSPFMWLRGDNSDRGIQCLNFQGTGVSPWMQPRLDPSMMGMQSDMYQAMATAALQEMRAIDYSKIAPASVLQFQQPQGLSCQSSTLMQPQMLHQSQPQQAFLQSVQENQQHSQSQSQAQAQAQTQSHHLHSQLQPQQSFNNQQQQHQQQPRQAQPLDHQQIPCTIPAISQFASCSQSQSPSLQTVPSLCQQPSFSDSNGNPVTSPTVSPLHSLAGSFVQDDSSQLLNLQRAHSVIPSAGWPSKRAAIDPLCTGASQYFLPQVEILGTPQSSISQNTVALPPFPGRECPIDDRDEGSDPQNHVLFGVNIESSSLLMQNGMSNLRGVGNDSVSTTLPFSSNYMSTAGTNFSVNPTMTSSNCIDESGFLQSHENVGQVNPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQDMGKRGLELLNSVPIQRLSNSTCDDYGSRQDSRNLISGITSVGPLDY | 1045 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 8889744 | 8896640 | - | Lsi02G009220.1 | Lsi02g00922 | 655664 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g00922 | 1045 | Pfam | B3 DNA binding domain | 253 | 359 | IPR003340 | GO:0003677 | |
Lsi02g00922 | 1045 | MobiDBLite | consensus disorder prediction | 10 | 32 | - | - | |
Lsi02g00922 | 1045 | Pfam | AUX/IAA family | 903 | 1001 | IPR033389 | - | |
Lsi02g00922 | 1045 | Pfam | Auxin response factor | 384 | 467 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Lsi02g00922 | 1045 | MobiDBLite | consensus disorder prediction | 717 | 736 | - | - | |
Lsi02g00922 | 1045 | MobiDBLite | consensus disorder prediction | 621 | 689 | - | - | |
Lsi02g00922 | 1045 | CDD | B3_DNA | 252 | 358 | IPR003340 | GO:0003677 | |
Lsi02g00922 | 1045 | ProSiteProfiles | B3 DNA-binding domain profile. | 253 | 360 | IPR003340 | GO:0003677 | |
Lsi02g00922 | 1045 | SUPERFAMILY | DNA-binding pseudobarrel domain | 238 | 387 | IPR015300 | - | |
Lsi02g00922 | 1045 | Gene3D | - | 910 | 1001 | - | - | |
Lsi02g00922 | 1045 | Gene3D | - | 422 | 494 | - | - | |
Lsi02g00922 | 1045 | ProSiteProfiles | PB1 domain profile. | 912 | 996 | IPR000270 | GO:0005515 | |
Lsi02g00922 | 1045 | PANTHER | AUXIN RESPONSE FACTOR 6 | 132 | 1024 | - | - | |
Lsi02g00922 | 1045 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 132 | 1024 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Lsi02g00922 | 1045 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Lsi02g00922 | 1045 | SUPERFAMILY | CAD & PB1 domains | 902 | 987 | - | - | |
Lsi02g00922 | 1045 | SMART | B3_2 | 253 | 360 | IPR003340 | GO:0003677 | |
Lsi02g00922 | 1045 | Gene3D | - | 251 | 359 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g00922 | Lsi-Chr2:8889744 | Lsi09g00876 | Lsi-Chr9:10198003 | 0 | dispersed | |
Lsi09g00877 | Lsi-Chr9:10219872 | Lsi02g00922 | Lsi-Chr2:8889744 | 5.48E-101 | dispersed | |
Lsi11g00096 | Lsi-Chr11:993183 | Lsi02g00922 | Lsi-Chr2:8889744 | 4.14E-14 | dispersed | |
Lsi07g00734 | Lsi-Chr7:7957652 | Lsi02g00922 | Lsi-Chr2:8889744 | 7.59E-12 | transposed | |
Lsi11g00812 | Lsi-Chr11:9994471 | Lsi02g00922 | Lsi-Chr2:8889744 | 1.24E-28 | transposed | |
Lsi01g00116 | Lsi-Chr1:1225345 | Lsi02g00922 | Lsi-Chr2:8889744 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24798 | PF02309 | AUX_IAA | 3.90E-07 | CL0072 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g00922 | - | - | csv:101211705 | 1620.14 |