Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00922 ATGAAAAAGACAGCGAAAAATAATGGCGGTTTATTTGATCGTCCTTCTTCCTCTTCCCCCGTTTGTGAAAAAGGTCACCACTCACTCAGTGCATCTGGTGGCTCCCAGGCGTTTCTGGATCTTCAACTCTGTAGTTGTCTCAGTCGGAGAACTCTTCAAGAATCTGTAATCTGTGGGCCTGGAGGAGGAGGAGGAGGAGGAGGAGTTGGGTTCTTAGTTTCTGTAAGAATGAGGCTCTCTGCGGGTGGTTTTAGTCCTCAGGCTCAGGAAGATGATTCTGCTTTTGATGACTTTCCCATTCGATTCATACCCTTAACGTTATTGTTCTTCCTTTTTGGACCAATTGTGGAGACTTCGCATTTTTTACTCGTTTTTTTGCCTTCCGGTGGCCTTGGATTTTGCAGCGTAATGCTAGATTTATGCGAGAGAAGGGTCCTGAATTCCGAGCTTTGGCATGCGTGCGCGGGTCCTCTTGTTTCTCTGCCGGCTGTTGGCAGTCGCGTTGTTTATTTTCCTCAAGGTCATAGTGAGCAGGTTGCTGCATCTACCAATAAAGAGGTGGATGCCCAGATACCAAATTACCCGAGTTTACCGCCGCAGCTCATTTGTCAGCTTCACAACCTGACAATGCATGCAGATGCTGAGACAGATGAAGTATACGCTCAGATGACTCTGCAACCTTTGAGTGCTCAAGAATTGAAGGAAGCCTACCTTCCAGCCGAGTTGGGCACTCCAAGTAGGCAGCCAACGAATTATTTTTGCAAAACTTTGACAGCCAGTGATACCAGCACACATGGAGGTTTTTCTGTTCCTCGCCGTGCTGCTGAAAAAGTATTCCCTCCTCTGGTAAGTTCAATGCAGGACTTCTCCATGCAGCCCCCAGCCCAAGAGCTGATTGCGAGGGACCTACATGATAATGAGTGGAAATTTAGACATATATTTCGCGGCCAGCCTAAAAGACACCTTCTAACAACTGGATGGAGTGTCTTCGTGAGTGCTAAAAGACTTGTAGCGGGTGATGCTGTACTTTTTATCTGGAATGAAAAGAACCAATTACTCCTCGGAATTAGGCGTGCAAATCGGCCACAAACCGTGATGCCTTCATCTGTGTTGTCAAGCGATAGCATGCATTTAGGGCTTCTTGCTGCAGCATCTCATGCAGCTGCTACTATCAGTCGGTTTACAATATTTTTTAACCCAAGGGCTAGCCCTTCAGAGTTTGTCATACCACTGGCCAAATATGTGAAGGCAGTCTACCATACACGTGTTTCTGTTGGCATGCGCTTTAGGATGCTGTTTGAAACAGAAGAATCAAGTGTTCGTCGCTACATGGGTACAATCACTGGCATTAGTGACTTGGATCCTGTAAGATGGCAAAACTCACATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCGACAGCAGGAGAGCGACAGCCAAGAGTGTCCTTGTGGGAAATTGAACCACTGACAACATTTCCAATGTATCCATCACCGTTTCCACTTAGGCTAAAACGACCATGGCCAACTGGACTGCCTTCTTTTGGTACTTTTACTCTGTCTTCCCATTGCATCAAGGATAGTGACCTCGGAATGAATTCTCCATTCATGTGGCTACGGGGAGATAATAGCGATCGTGGCATCCAGTGTCTAAACTTTCAGGGAACTGGGGTCTCACCGTGGATGCAGCCGAGGCTTGATCCATCCATGATGGGCATGCAATCTGACATGTATCAAGCCATGGCTACTGCAGCTCTTCAGGAGATGAGGGCAATTGATTATTCCAAAATAGCACCTGCATCTGTTCTGCAATTCCAGCAGCCCCAAGGTCTTTCTTGTCAGTCTTCTACCTTAATGCAGCCTCAGATGTTGCATCAGTCTCAACCTCAGCAGGCGTTTCTACAATCTGTTCAAGAAAACCAGCAGCATTCTCAGTCTCAGTCTCAAGCTCAAGCTCAAGCTCAAACTCAGTCACATCATCTTCATTCACAATTGCAGCCCCAGCAATCATTCAATAATCAACAACAGCAGCATCAACAACAACCAAGGCAGGCACAGCCACTCGATCATCAGCAGATTCCTTGTACAATCCCTGCTATATCTCAGTTTGCTTCATGTTCTCAATCCCAGTCACCGTCACTGCAAACCGTCCCTTCCCTTTGCCAACAACCAAGTTTTTCTGATTCCAATGGTAACCCTGTAACTAGTCCTACTGTTTCCCCATTGCATAGCCTTGCGGGTTCATTTGTCCAAGATGACTCGTCTCAGCTGCTTAACCTTCAAAGAGCACATTCGGTAATTCCTTCAGCTGGTTGGCCATCAAAGAGAGCTGCTATCGATCCTCTCTGTACTGGAGCTTCTCAATATTTTCTACCTCAAGTGGAAATTTTGGGAACACCACAGAGTAGTATTTCTCAGAATACTGTTGCATTGCCACCCTTCCCTGGAAGGGAGTGCCCCATTGATGACCGAGACGAGGGTTCTGATCCACAAAACCATGTTTTATTTGGTGTGAATATAGAGTCTTCATCCCTTCTAATGCAGAATGGGATGTCAAACCTTAGGGGAGTCGGCAATGATAGCGTTTCTACAACTCTTCCTTTTTCTTCCAATTATATGAGCACTGCTGGAACCAATTTTTCTGTAAATCCAACCATGACATCCTCAAATTGCATCGATGAATCGGGTTTCCTGCAGTCTCATGAAAATGTGGGCCAAGTAAACCCACCCAACGGAACCTTTGTCAAGGTTCATAAATCGGGGACCTACAGTAGGTCGTTAGATATAACCAAATTCAACAGCTATCCTGAGCTACGCAGCGAGCTTGCTCGCATGTTTGGCCTAGAAGGCGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGACGTTCTTCTCCTTGGTGATGGCCCGTGGCCGGAGTTTGTAAACAGTGTGTGGTGTATCAAAATACTTTCACCAGAAGAAGTTCAGGACATGGGCAAACGAGGTTTAGAACTTCTGAACTCTGTGCCAATTCAGAGGCTCTCGAACAGCACCTGTGACGACTATGGTAGCCGTCAGGACTCGAGAAATTTGATTTCAGGGATAACTTCTGTTGGGCCTCTTGACTACTGA 3138 46.56 MKKTAKNNGGLFDRPSSSSPVCEKGHHSLSASGGSQAFLDLQLCSCLSRRTLQESVICGPGGGGGGGGVGFLVSVRMRLSAGGFSPQAQEDDSAFDDFPIRFIPLTLLFFLFGPIVETSHFLLVFLPSGGLGFCSVMLDLCERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAQIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLSAQELKEAYLPAELGTPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLVSSMQDFSMQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAASHAAATISRFTIFFNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFGTFTLSSHCIKDSDLGMNSPFMWLRGDNSDRGIQCLNFQGTGVSPWMQPRLDPSMMGMQSDMYQAMATAALQEMRAIDYSKIAPASVLQFQQPQGLSCQSSTLMQPQMLHQSQPQQAFLQSVQENQQHSQSQSQAQAQAQTQSHHLHSQLQPQQSFNNQQQQHQQQPRQAQPLDHQQIPCTIPAISQFASCSQSQSPSLQTVPSLCQQPSFSDSNGNPVTSPTVSPLHSLAGSFVQDDSSQLLNLQRAHSVIPSAGWPSKRAAIDPLCTGASQYFLPQVEILGTPQSSISQNTVALPPFPGRECPIDDRDEGSDPQNHVLFGVNIESSSLLMQNGMSNLRGVGNDSVSTTLPFSSNYMSTAGTNFSVNPTMTSSNCIDESGFLQSHENVGQVNPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQDMGKRGLELLNSVPIQRLSNSTCDDYGSRQDSRNLISGITSVGPLDY 1045
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8889744 8896640 - Lsi02G009220.1 Lsi02g00922 655664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00922 1045 Pfam B3 DNA binding domain 253 359 IPR003340 GO:0003677
Lsi02g00922 1045 MobiDBLite consensus disorder prediction 10 32 - -
Lsi02g00922 1045 Pfam AUX/IAA family 903 1001 IPR033389 -
Lsi02g00922 1045 Pfam Auxin response factor 384 467 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lsi02g00922 1045 MobiDBLite consensus disorder prediction 717 736 - -
Lsi02g00922 1045 MobiDBLite consensus disorder prediction 621 689 - -
Lsi02g00922 1045 CDD B3_DNA 252 358 IPR003340 GO:0003677
Lsi02g00922 1045 ProSiteProfiles B3 DNA-binding domain profile. 253 360 IPR003340 GO:0003677
Lsi02g00922 1045 SUPERFAMILY DNA-binding pseudobarrel domain 238 387 IPR015300 -
Lsi02g00922 1045 Gene3D - 910 1001 - -
Lsi02g00922 1045 Gene3D - 422 494 - -
Lsi02g00922 1045 ProSiteProfiles PB1 domain profile. 912 996 IPR000270 GO:0005515
Lsi02g00922 1045 PANTHER AUXIN RESPONSE FACTOR 6 132 1024 - -
Lsi02g00922 1045 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 132 1024 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lsi02g00922 1045 MobiDBLite consensus disorder prediction 1 32 - -
Lsi02g00922 1045 SUPERFAMILY CAD & PB1 domains 902 987 - -
Lsi02g00922 1045 SMART B3_2 253 360 IPR003340 GO:0003677
Lsi02g00922 1045 Gene3D - 251 359 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00922 Lsi-Chr2:8889744 Lsi09g00876 Lsi-Chr9:10198003 0 dispersed
Lsi09g00877 Lsi-Chr9:10219872 Lsi02g00922 Lsi-Chr2:8889744 5.48E-101 dispersed
Lsi11g00096 Lsi-Chr11:993183 Lsi02g00922 Lsi-Chr2:8889744 4.14E-14 dispersed
Lsi07g00734 Lsi-Chr7:7957652 Lsi02g00922 Lsi-Chr2:8889744 7.59E-12 transposed
Lsi11g00812 Lsi-Chr11:9994471 Lsi02g00922 Lsi-Chr2:8889744 1.24E-28 transposed
Lsi01g00116 Lsi-Chr1:1225345 Lsi02g00922 Lsi-Chr2:8889744 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24798 PF02309 AUX_IAA 3.90E-07 CL0072 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00922 - - csv:101211705 1620.14