Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00938 ATGGATAATGCTGATATTGAGAGCGGGGAAGAGGAATTTCATGGGCAGAGGGGTAGGAAGTATCGCCCTGTTGAAGCCCATGATCGTGCTGTTCTTGAAATGTCTTCCATGGATCCGGGTTCTTCATCTTCTTCCTCCTCCATTCCCCCCATGCGCCATCCTTCTCTCAAGAAGGTAAAAGTGGGTTCTCAGACAGGTACTGAAAAAGAAGGGAACTCTCCTACTCGTATTGAAGTCAATGGCCCCCAGCGAGAATCCAAACTGGAGTTTTTTGGTTTTGATTCTCTTGTCAATATTCTTGGCCTTAAGAGTATGATGGGGGAACAAATTCAAGCACCTTCTAGTCCTCGTGATGGTGAGAATGTTTCTATCACTCAGGGGTTGCCAAAGGGTCAGGCGGGTTGTCCTGTGAGATTAGTTGAGACCAATGAAGTCAAATCGGGGACTAGTGACTTTAGCTGTTACAAAGTTGTCGGAGGGAGGCCATCTTCTTCCTTGGAGGCTTATTGGTTCGATGCGAGTCTGCGCATGATCGAAAAGTGGCGTGACGTCACGGCTGCCATCACTTTAGTTGAAGGGATAGAGTTGTCGCTGATTGTTGGCATGGCTGGCATTGGTGAGTCATTAGTGCTGGTGGCATTTTGTGGTTTATGTACGTTCTTGACTTCGATTTCACTAAGTGCTATTGCAACTAATGGAGCTATGAAGGGTGGGGGACCATATTATCTGATTGGTCGTGCCCTTGGTCCAGAGGTTGGAGTTAGCATTGGGCTATGTTTCTTTCTCGGAAATGCAGTTGCTGGTGCGCTTTATGTGTTGGGAGCTGTAGAAACATTTTTGAATGCTGTCCCAGCTGCAGGGATTTTCAGAGAGACTGTAACAAAAATTAATGGAACAACTGTTGCAGAGCCAATACAAAGCCCAAGTTCACATGACTTGCAAGTTTATGGCATTATTGTGACAATTCTTCTGTGCTTCATTGTGTTTGGTGGTGTGAAAATGATTAATAGGGTTGCTCCTGCTTTCCTTATTCCAGTCTTGTTCTCATTAGTTTGCATATTTCTTGGAATTTTTCTGGCAAGGAAAAACGACCCTGCAGCGGGCGTCACAGGCTTGAGTTTGGAATCTTTTAAAGAAAATTGGAGTTCCGATTATCAGATGACTAACAGTGCTGGAATTCCTGATCCTTTTGGAAAAGTATATTGGAATTTCAATGCATTGGTTGGTCTTTTTTTTCCTGCTGTGACGGGAATAATGGCTGGTTCTAATAGATCAGCTTCACTGAAGGATACTCAGCGTTCAATTCCTATTGGAACATTGGCTGCTACTCTAACAACTACTGCATTGTATCTGGTCTCTGTTTTGCTCTTTGGAGCACTGGCAACCAGAGAGAAACTGTTGACAGATAGGCTTCTTACTGCTACGGTTGCTTGGCCTTTCCCAGCAATTATATATGTTGGAATTATTTTATCAACTCTTGGAGCTGCCCTTCAGAGCCTGACTGGAGCCCCCCGCTTACTAGCAGCCATAGCTAATGATGATATATTGCCTATTCTAAACTATTTTAAAGTAGCAGATGGCAATGAGCCATACTTTGCAACCCTCTTTACTGCATTTCTCTGCATCGGATGTGTCATTATTGGGAATCTCGATCTTATCACACCAACTGTAACCATGTTTTTCCTACTGTGTTATGCTGGTGTGAACTTATCCTGCTTCCTTTTGGATCTACTAGACGCTCCCAGTTGGCGTCCACGCTGGAGATTCCATCACTGGAGCCTCTCTCTTCTTGGAGCATCACTTTGTGTAGTGATAATGTTCTTGATCTCGTGGTCGTTCACAATAGTGTCTCTAGCCCTTGCAAGCCTTATATATTATTATGTGTGCCTTAGAGGTAAGGCTGGAGACTGGGGTGATGGTTTCAAGAGTGCATATTTCCAACTTGCTCTCCGTAGTCTTCGTTCGCTTGGAGCGAGCCAAGTCCACCCAAAGAATTGGTATCCCATTCCCTTGATATTTTGCCGGCCATGGGGAAAGCTGCCTGAAAATGTACCGTGTCACCCTAAGCTTGCAGACTTTGCTAACTGCATGAAGAAAAAAGGCCGTGGAATGTCCATATTTGTCTCCATACTAGATGGAGATTACCATGAACGGGTTGAAGATGCAAAAGCTGCCTGCAAGCAGCTTGCTACGTATATTGATTACAAACGTTGTGAAGGTGTGGCAGAGATTGTTGTAGCTCCCACAATGTCTGAAGGTTTCCGAGGGATCGTTCAGACGATGGGTCTTGGAAATCTCAAGCCGAATATTGTAGTCATGCGATACCCTGAAATCTGGCGTCGTGAAAATCTAGTAGAAATTCCAGCTACTTTTGTTGGAATAATCAATGACTGCATTGATGCTAACAAGGCAGTTGTCATTGTTAAGGGTCTGGATGAATGGCCTAATGAATTTCAAAGGCAATATGGAACTATAGACTTGTATTGGATTGTGAGAGATGGTGGTCTTATGCTTCTCCTCTCTCAGCTTCTCCTTACAAAGGAGAGCTTTGAAAGCTGTAAGATTCAGGTGTTCTGCATTGCAGAGGAGGATTCCGATGCAGAGGGCCTCAAAGCTGATGTCAAAAAGTTTCTGTATGATCTTCGGATGCAAGCTGAGGTGATCGTTATAACGATAAAATCATGGGACACGCAAGTGGAGGGCGCGCAACCAGACGAATCAATGGAAGCCTTCACTGCCGCTCAAGGGAGGATTGCTAGTTATTTAAGTGAAATGAAGGCAACAGCTGAGAGCAGAGGAACCACACTCATGGCTGATGGGAAGCCTGTGAGTGTGAATGAGCAGCAGGTTGAGAAGTTTCTAAATACAACTCTCAAGTTGAATTCCACAATTCTGAGATACTCGAGGATGGCTGCGGTCGTGCTCGTCAGCCTCCCGCCACCTCCTGTCAACCACCCTGCTTACTTCTATATGGAGTACTTGGATTTGTTGGTTGAGAATGTGCCTAGGCTCTTGATCGTAAGAGGATACCGTCGAGACGTCGTAACTTTATTCACCTAG 3060 44.87 MDNADIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGSSSSSSSIPPMRHPSLKKVKVGSQTGTEKEGNSPTRIEVNGPQRESKLEFFGFDSLVNILGLKSMMGEQIQAPSSPRDGENVSITQGLPKGQAGCPVRLVETNEVKSGTSDFSCYKVVGGRPSSSLEAYWFDASLRMIEKWRDVTAAITLVEGIELSLIVGMAGIGESLVLVAFCGLCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGALYVLGAVETFLNAVPAAGIFRETVTKINGTTVAEPIQSPSSHDLQVYGIIVTILLCFIVFGGVKMINRVAPAFLIPVLFSLVCIFLGIFLARKNDPAAGVTGLSLESFKENWSSDYQMTNSAGIPDPFGKVYWNFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYLVSVLLFGALATREKLLTDRLLTATVAWPFPAIIYVGIILSTLGAALQSLTGAPRLLAAIANDDILPILNYFKVADGNEPYFATLFTAFLCIGCVIIGNLDLITPTVTMFFLLCYAGVNLSCFLLDLLDAPSWRPRWRFHHWSLSLLGASLCVVIMFLISWSFTIVSLALASLIYYYVCLRGKAGDWGDGFKSAYFQLALRSLRSLGASQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHERVEDAKAACKQLATYIDYKRCEGVAEIVVAPTMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLVEIPATFVGIINDCIDANKAVVIVKGLDEWPNEFQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEGLKADVKKFLYDLRMQAEVIVITIKSWDTQVEGAQPDESMEAFTAAQGRIASYLSEMKATAESRGTTLMADGKPVSVNEQQVEKFLNTTLKLNSTILRYSRMAAVVLVSLPPPPVNHPAYFYMEYLDLLVENVPRLLIVRGYRRDVVTLFT 1019
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9191708 9205336 + Lsi02G009380.1 Lsi02g00938 655680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00938 1019 PANTHER CATION-CHLORIDE COTRANSPORTER 1-LIKE ISOFORM X1 190 1018 - -
Lsi02g00938 1019 MobiDBLite consensus disorder prediction 36 51 - -
Lsi02g00938 1019 MobiDBLite consensus disorder prediction 1 83 - -
Lsi02g00938 1019 Pfam Solute carrier family 12 819 1018 IPR018491 GO:0006811|GO:0016020|GO:0022857
Lsi02g00938 1019 Pfam Solute carrier family 12 688 809 IPR018491 GO:0006811|GO:0016020|GO:0022857
Lsi02g00938 1019 TIGRFAM 2a30: K-Cl cotransporter 194 1019 IPR004842 GO:0006811|GO:0015377|GO:0016021
Lsi02g00938 1019 MobiDBLite consensus disorder prediction 8 32 - -
Lsi02g00938 1019 PANTHER SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS 190 1018 IPR004842 GO:0006811|GO:0015377|GO:0016021
Lsi02g00938 1019 MobiDBLite consensus disorder prediction 60 80 - -
Lsi02g00938 1019 PANTHER CATION-CHLORIDE COTRANSPORTER 1-LIKE ISOFORM X1 13 133 - -
Lsi02g00938 1019 PANTHER SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS 13 133 IPR004842 GO:0006811|GO:0015377|GO:0016021
Lsi02g00938 1019 Gene3D Amino acid/polyamine transporter I 189 636 - -
Lsi02g00938 1019 Pfam Amino acid permease 195 654 IPR004841 GO:0016020|GO:0055085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00938 K14427 - csv:101216218 1773.83