Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00942 ATGGCTCTTGTCATGCATAGAGATTCCTTGAATAAGCAGATGGATACTAGCAAGTATGTTAGATATACGCCTGAACAAGTCGATGCATTAGAAAGGGTTTATGCAGAATGCCCAAAACCCAGTTCGTTGAGGAGGCAACAGCTCATTCGGGAGTGTCCTATTCTCTCTAATATTGAGCCTAAGCAGATCAAAGTTTGGTTCCAAAATCGCAGATGTCGTGAAAAGCAAAGGAAGGAAGCTTCTCGTCTTCAAACAGTTAATAGGAAGCTAACTGCGATGAACAAGCTGTTGATGGAAGAGAACGACCGGTTGCAGACGCAGGTCTCTCGTTTGGTTTACGAGAACGGATACATGAGACAGCAACTGCATACTGCATCTGGAACAACCACAGACAATAGCTGTGAGTCTGTGGTCATGAGTGGTCAACAGCATCAACAGCAAAACCCAACTAAGCATACTCAAAAGGATGCTAATAACCCAGCTGGTCTTCTTGCAATAGCCGAGGAGACCTTGGCAGAGTTCCTTTCCAAGGCAACAGGAACTGCTGTCGACTGGGTACAAATGATTGGGATGAAGCCTGGTCCGGATTCAATTGGGATTGTTGCTGTTTCCCGCAATTGCAATGGGGTAGCAGCACGAGCCTGTGGTTTAGTGAGTCTTGAGCCCATGAAGGTGGCCGAAATTCTCAAAGATCGTCTGTCATGGTTTCGTGACTGCCGTTGTGTTGATGTACTAAGTGCAATCTCTACAGGAAATGGGGGGACCATAGAACTCTTATATATGCAGACATATGCACCTACAACTTTGGCCGCAGCGCGTGACTTTTGGACTCTTCGATACACTACAAGCTTGGAAGATGGCAGCCTTGTGATATGTGAGAGATCGTTAACGTCATCTACTGGTGGCCCATCAGGGCCCCCTCCATCCAGTTTCATAAGAGCTGAAATGCTTCCAAGCGGGTATCTTATTCGAGCTTGTGAGGGTGGTTCCCTTATTCACATTGTCGATCATGTTGATTTAGATGTTTGGAGTGTTCCTGAAGTTCTAAGGCCACTTTATGAATCAACAAAGATTCTAGCTCAGAGAATGACTGTTGCTGCCTTACGCTACGTTCGGCAAATTGCTCAAGAGGCGAGTGGAGAAATTCAATTGGGTGGTGGCCGCCAACCGGCCGTTTTAAGGACTTTCATAAATGGATTTGTGGATGATGGTTGGTCGCTTATGGATAGCGATGGAGTAGAGGATGTGACAGTTGTTATTAATTCATCTCCAAACAAATTCCTCGGTTCCCAATATAACACATCATTGTATCCTACTTTTGGAGGTGTATTGTGTGCCAAGGCGTCAATGTTGCTCCAGAATGTCCCCCCTGCTTTGCTTGTTCGTTTCCTACGGGAGCATCGTTCAGAATGGGCTGATTATGGGGTTGATGCATACTCTGCTGCATGTCTTAAAGCCAGTGCATATGCTGTTCCGTGTGCGAGACCCGGTGGCTTCCCTAGTGGTCAAGTCATTTTACCACTTGCACATACAGTTGAGAATGAGGAGTTCCTAGAGGTCGTTCGGTTAGAGGGCCACGCTATGTTCCCTGAAGAAGCTGCTTTAGGAGGACGGGATATGTATTTATTGCAGCTGTGTAGTGGTGTTGATGAAAATACAGTTGGTGCCTGTGCTCAGCTTGTATTTGCACCTATAGACGAATCATTTGCTGATGATGCTCCCTTGCTGCCATCTGGTTTTCGTGTCATACCATTGGAGTCCAAAACAGATGCGCCTGCAGCTACTCGAACTTTGGATTTGGCATCTACTCTAGAAGTCCGACCTGGAACTACCCGCCCAGGAGGTGAAACTGATGTTACAAACTACAACCTCAGGTCAGTCTTGACTATTGCATTCCAATTCACTTTCGAGAACCACATGCGGGATAGTGTGGCTGCTATGGCGAGACAATATGTGCGGACTGTTGTGGGTTCAGTTCAAAGGGTTGCCATGGCTATCGCCCCCTCACAGCTTGGCTCCCAAATCGGTCCAAAAAGCCTTCCCGGCTCCCCAGAGGCTCTCACATTAGCTCAGTGGATCGCACGAAGCTATAGGGCTAATGAGACCATCGACGTCATGTATCCGAAACCCAACCCCTTGAACGTCATGATCCACTCAGGAACAGAGCTCTTTCAGGTTGAATCCCAATCTGATGCTATCTTGAAGCAGCTTTGGCACCACTCAGATACAATCTTGTGCTGCTCTGTCAAAACTAATGCATCTCCTGTTTTCACATTTGCGAACCAAGCTGGACTTGACATGCTCGAAACCACCCTTGTTTCTCTTCAAGATATAACACTCGACAAGATCCTCGATGATGCTGGTCGGAAGATACTGTGCTCCGAATTCTCCAAGATAATGCAACAGGGATTTGCATACCTTCCAGCAGGGATATGCGTCTCGAGTATGGGAAGGCCGGTGTCGTATGAACAGGCAATTGCATGGAAAGTTCTGAATGATGATGATGTCCATCACTGTCTGGCTTTCATGTTTGTTAACTGGTCCTTTATGTGA 2553 46.81 MALVMHRDSLNKQMDTSKYVRYTPEQVDALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQTQVSRLVYENGYMRQQLHTASGTTTDNSCESVVMSGQQHQQQNPTKHTQKDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARACGLVSLEPMKVAEILKDRLSWFRDCRCVDVLSAISTGNGGTIELLYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPSGPPPSSFIRAEMLPSGYLIRACEGGSLIHIVDHVDLDVWSVPEVLRPLYESTKILAQRMTVAALRYVRQIAQEASGEIQLGGGRQPAVLRTFINGFVDDGWSLMDSDGVEDVTVVINSSPNKFLGSQYNTSLYPTFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASAYAVPCARPGGFPSGQVILPLAHTVENEEFLEVVRLEGHAMFPEEAALGGRDMYLLQLCSGVDENTVGACAQLVFAPIDESFADDAPLLPSGFRVIPLESKTDAPAATRTLDLASTLEVRPGTTRPGGETDVTNYNLRSVLTIAFQFTFENHMRDSVAAMARQYVRTVVGSVQRVAMAIAPSQLGSQIGPKSLPGSPEALTLAQWIARSYRANETIDVMYPKPNPLNVMIHSGTELFQVESQSDAILKQLWHHSDTILCCSVKTNASPVFTFANQAGLDMLETTLVSLQDITLDKILDDAGRKILCSEFSKIMQQGFAYLPAGICVSSMGRPVSYEQAIAWKVLNDDDVHHCLAFMFVNWSFM 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9312445 9320337 + Lsi02G009420.1 Lsi02g00942 655684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00942 850 CDD homeodomain 18 78 IPR001356 GO:0003677
Lsi02g00942 850 Pfam START domain 166 373 IPR002913 GO:0008289
Lsi02g00942 850 SMART HOX_1 15 81 IPR001356 GO:0003677
Lsi02g00942 850 Gene3D - 185 377 IPR023393 -
Lsi02g00942 850 SUPERFAMILY Bet v1-like 166 376 - -
Lsi02g00942 850 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 850 IPR044830 GO:0003700
Lsi02g00942 850 MobiDBLite consensus disorder prediction 126 156 - -
Lsi02g00942 850 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 850 - -
Lsi02g00942 850 SMART START_1 165 374 IPR002913 GO:0008289
Lsi02g00942 850 CDD bZIP 70 109 - -
Lsi02g00942 850 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Lsi02g00942 850 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Lsi02g00942 850 Coils Coil 87 107 - -
Lsi02g00942 850 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Lsi02g00942 850 ProSiteProfiles START domain profile. 156 383 IPR002913 GO:0008289
Lsi02g00942 850 Gene3D - 10 84 - -
Lsi02g00942 850 Pfam MEKHLA domain 718 849 IPR013978 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00942 Lsi-Chr2:9312445 Lsi02g02997 Lsi-Chr2:36053588 1.84E-42 dispersed
Lsi05g01165 Lsi-Chr5:19596640 Lsi02g00942 Lsi-Chr2:9312445 8.75E-10 dispersed
Lsi01g00085 Lsi-Chr1:832790 Lsi02g00942 Lsi-Chr2:9312445 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24799 PF01852 START 2.10E-50 CL0209 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00942 K09338 - csv:101211318 1582.39