Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00943 ATGAGTCATTTTCCAGCGGATTTCAGGAGGCATGAATCAGCTAAAAGTAGATTAAAAGATTTATTGCTTCAGAAAGATAATCAATTATGTGCAGATTGTGGTGCCCCAGATCCTAAATGGGCCTCTGCGAATATTGGTGTGTTTATATGCTTAAAATGTAGTGGCGTGCACAGAAGCCTTGGAACACATATATCAAAGGTTTTGTCAATAACATTGGATGAATGGTCTGATGATGAGATTGATGCAATGATAGAGGTTGGAGGAAATGGTTCTGCTAATGCAATATATGAGGCTTTTATCCCTGTTGAATATACAAAGCCTGGACCAAGTGCCAGCCATGAGGAGCGTTCAAAGTTCATTCGGTCTAAGTATGAACTTCAAGAATTTTTAAAACCGAGCTTGAGAATTGTATCCAATAACTCAAAGAGTTCTGAGGAGCCAAGTTTTTTTCAAGAGATCTCTGATAGCTTTCGAAGCTCAAATTCTTCAAAGAAATCACCACAAGAAGGCATGGTTGAATTTGTGGGATTACTGAAAGTGAAGGTGATTAAAGGCACAAACTTAGCCGTGAGAGATGTGAAGTCCAGTGATCCTTTCATTACCTTGACTCTTGGGCAACAGACTGCTAAAACAACGGTGATAAAGAGCAACTTGAATCCAGTTTGGAACGAGGAACTCATGCTTTCGGTTCCTCAGGAATATGGACCCTTGAAGTTGCAAGTGTTCGATCACGACGTAATTTCATCTAATGACTTGATGGGTGAAGCAGAAATCGACCTCCAGCCGATGTTAACATCAGCAATGGCATTTGGAGATGCTGAAATGCTTGAGAATATGCAGATAGGAAAATGGTTGAAGTCAGATGACAACGCCCTCATCGATGACAGCGCGGTTGTCATTGTTGACGGGCAGGTGAAACAAGAGGTGTCACTCAAGCTCCAAAATGTAGAATCAGGTGAAGTGTACTTGGAACTAGAGTGGATGCCTCTTGATCAATAA 999 41.14 MSHFPADFRRHESAKSRLKDLLLQKDNQLCADCGAPDPKWASANIGVFICLKCSGVHRSLGTHISKVLSITLDEWSDDEIDAMIEVGGNGSANAIYEAFIPVEYTKPGPSASHEERSKFIRSKYELQEFLKPSLRIVSNNSKSSEEPSFFQEISDSFRSSNSSKKSPQEGMVEFVGLLKVKVIKGTNLAVRDVKSSDPFITLTLGQQTAKTTVIKSNLNPVWNEELMLSVPQEYGPLKLQVFDHDVISSNDLMGEAEIDLQPMLTSAMAFGDAEMLENMQIGKWLKSDDNALIDDSAVVIVDGQVKQEVSLKLQNVESGEVYLELEWMPLDQ 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9334771 9339547 + Lsi02G009430.1 Lsi02g00943 655685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00943 332 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096
Lsi02g00943 332 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096
Lsi02g00943 332 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096
Lsi02g00943 332 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096
Lsi02g00943 332 ProSiteProfiles C2 domain profile. 159 275 IPR000008 -
Lsi02g00943 332 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 10 332 - -
Lsi02g00943 332 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 174 330 IPR035892 -
Lsi02g00943 332 Pfam C2 domain 176 267 IPR000008 -
Lsi02g00943 332 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Lsi02g00943 332 CDD ArfGap 18 124 - -
Lsi02g00943 332 Gene3D Arf GTPase activating protein 5 136 IPR038508 -
Lsi02g00943 332 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 146 IPR001164 GO:0005096
Lsi02g00943 332 Gene3D C2 domain 174 332 IPR035892 -
Lsi02g00943 332 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 10 332 IPR044518 GO:0005096|GO:0005543
Lsi02g00943 332 CDD C2_ArfGAP 175 319 - -
Lsi02g00943 332 SMART arf_gap_3 15 137 IPR001164 GO:0005096
Lsi02g00943 332 SMART C2_3c 177 272 IPR000008 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00082 Lsi02g00943 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00943 Lsi-Chr2:9334771 Lsi05g00329 Lsi-Chr5:4192568 5.43E-38 dispersed
Lsi09g00665 Lsi-Chr9:7443141 Lsi02g00943 Lsi-Chr2:9334771 4.27E-08 dispersed
Lsi02g00263 Lsi-Chr2:2249148 Lsi02g00943 Lsi-Chr2:9334771 9.53E-25 transposed
Lsi03g02095 Lsi-Chr3:32229862 Lsi02g00943 Lsi-Chr2:9334771 3.59E-21 transposed
Lsi04g00033 Lsi-Chr4:476752 Lsi02g00943 Lsi-Chr2:9334771 7.08E-113 transposed
Lsi04g01179 Lsi-Chr4:17364011 Lsi02g00943 Lsi-Chr2:9334771 2.46E-15 transposed
Lsi04g01282 Lsi-Chr4:20241871 Lsi02g00943 Lsi-Chr2:9334771 2.17E-10 transposed
Lsi07g00388 Lsi-Chr7:4139003 Lsi02g00943 Lsi-Chr2:9334771 3.91E-18 transposed
Lsi07g01197 Lsi-Chr7:17460274 Lsi02g00943 Lsi-Chr2:9334771 7.19E-19 transposed
Lsi09g00817 Lsi-Chr9:9387587 Lsi02g00943 Lsi-Chr2:9334771 1.52E-111 transposed
Lsi11g00273 Lsi-Chr11:2785781 Lsi02g00943 Lsi-Chr2:9334771 1.46E-09 transposed
Lsi01g00082 Lsi-Chr1:798897 Lsi02g00943 Lsi-Chr2:9334771 4.45E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00943 K12486 - csv:101211569 592.808