Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00946 ATGCCTCCGAAAGCTTCGAAATCCAAGGAAGCTCCAGCTGAACGACCTATTCTTGGCCGTTTTTCTTCCCATCTCAAGATTGGAATTGTTGGATTGCCTAATGTTGGCAAATCTACTCTTTTCAACACACTCACAAAGCTGTCCATACCTGCTGAAAATTTCCCTTTTTGCACTATTGAACCTAATGAAGCCAGAGTAAATGTGCCTGATGAGCGGTTTGAATGGCTCTGCAACTTATACAAACCTAAAAGCGAGGTTTCGGCATTTCTAGAAATCCATGACATTGCTGGGCTGGTTCGAGGAGCTCATGAAGGACAGGGGTTGGGCAATAGTTTCTTATCACACATCCGTGCTGTTGATGGCATTTTCCATGTTTTACGTGCATTTGAGGATGCAGATATTATCCATGTTGACGATACAGTGGATCCTGTTAGGGATTTAGAGGTTATCAGCGAAGAACTACGTTTGAAGGATGTTGAATTTATGAAAAATAAAATTGAGGATCTTGAGAAGAGCATGAAGAGAAGCAATGACAAGCAGTTGAAGATTGAACTCGAATGCTGCCTAAAGGTCAAGGCATCGCTTGAGGAAGGTAAAGATGTTCGTTTAGGTGATTGGAAAGCTGCTGACGTTGAGATTCTCAATACTTTTCAGTTGCTCACGGCCAAGCCTGTTGTTTACTTGGTTAACATGACAGAGAAAGATTACCAAAGAAAAAAGAATAAATTTCTCCCAAAGATTCATGCCTGGGTGCAGGAACATGGTGGTGAAACAATTATTCCTTTCAGTGGCGTGTTAGAAAGAAATCTTGCGGATATGTCATCCCCAGCTGAAGTAGAAAAGTATTGTGAAGAGAACAAGATTCAAAGTGCCCTTCCAAAGATCATAAAGACTGGGTTCTCGGCGATCAATCTGATATACTTCTTCACTGCTGGTCCTGATGAGATAGGGAAGCTTTTGACATGTTGGCTCTCGTCACTCTTTTGGGATAGGTCCATCTCTGCTCGCCGTGAGGGTAATGGAGATATTCGTTTTTGGTCACCCAATCCGCCTAAAGTGAAATGCTGGCAAATTAGACGACAGACAAAGGCTCCTCAAGCTGCAGGGGCAATTCATACTGATTTTGAGAGAGGGTTCATTTGTGCTGAGGTCATGAAATTTGACGATCTCAAGGAACATGGCAGTGAGACGGCAGTCAAGGCTGCTGGAAAATACAAACAAGAGGGAAAAACTTACGTGGCGGTGGCAAAAAATGAGTCCCATATAACCAGCATGTCTTTGCTTAGACCTTACGGTAAGGTCGACGAAACCGACCAATTGAGGCTCGATGCTAGCCGGCGGACTCGGAAGAGGATTGCTGTCATTGTCTTGTCCTCTGTTGTTCTTGTTGGTGTTGTTGTTGCTGTTGTGTTTGGTACTAAAAATGCTTCCAACAATAACGATGACAGTAACAATCAAAATGGTGCTCTTTCAACTTCAATCAAAGCAGTTTGTGATGTGACATTGTATCCTGATACATGTCAAAATGCTTTTGGTCCTTTAGCTAACTCGAGCCACCTCGACCCCGGTCAGATATCCAAGCTTTCGGTTCAATTGGCGCTTGGCGAATTGTCGAGAGTGGCTGACTACATTTTTGATCATGCTATTACCAATTCAACTGACAATAAGACCATATTGGCTTTGAAAAATTGTCATGAACTTTTGGACTTAGCATTGGATCATTTGAATATCTCATTGTCTTCTAGTGATATTACATTGCTGAAAGCTGTGGATGATTTGAAAACATGGCTGACTTCAGCAGCTACTTACCAACAGACTTGCATCGATGGTCTCGCCGAAGTCGATCCGGCTTTGGCAAACCTCATTGCAAATTACTTGAAGAACTCCACTGAATTGACTAGCAATGGCCTTGCTATTGTGTCGTTCTTTTCGAAGCTTACGGATTCTTTAAGTCTACGACGATTGATGAGTTATGAAGATCGTCAAAGCAATGGAGATTGGGTGCGCCCCATACTCCGAAAGCTAGCTCAGAGCGATATCAGGAAGCAGGCTGACATTGTAGTAGCGAACGACGGTTCGGGGAAGTACAAAACAATCACTGCAGCTCTCAAGGCTGTTCCTGATAAGAGCAAGAAGAGAATTGTGATTTACGTGAAGAAGGGAACTTACAAGGAGAATGTTGAAGTTGGGAAGAACAAATGGAATGTGGTGATGGTTGGTGATGGAATGAATGCAACCACTGTAACTGCAAAAGGAAAAGGCTTCATTGCCATAGACATGGGATTCAAGAACACTGCTGGACCGAGCAAACACCAGGCGGTTGCTCTGATGTCAACATCCGACCAATCGATCTTCTACCGTTGCCGAATGGATGCATACCAAGACACTCTCTACACACACTCCAACCGTCAATTCTACCGTGAATGCAACGTTTACGGCACGGTCGATTTCATCTTCGGAAACTCAGCAGTAGTCCTACAAAACTGCACCATTGCACCCAAGTTGCCACTTTTAGGCCAAATGAACACAATCACAGCTCAAGGCAGGTTTGATCCTAATCAAAACACTGGCATTTCAATACAAGGCTCTTCGATCCGACCGTTCGAAAACTTGAAAACTACCAAAACTTATCTCGGTCGTCCGTGGAAGAACTACTCGACGACCGTGTTTATGCAAAGTAATTTGGGGAGCTTGATTGACCCAACTGGCTGGCTGCCATGGGTTGGAACATCAGCACCAGATACCATATTCTATGCAGAGTTTCAAAACTATGGCCCTGGTTCTTCCACAGCTAAAAGAGTCAAATGGAAGGGTGTGAAGAACATTGACATTAAAACTGCCAAAAAGTTCACAGTTTCTTCCTTCATTGATGGTAAAGATTGGATCTCAAAGGCACAAGTTCCTTTCAATGCCAGCCTTTGA 2922 43.5 MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLSIPAENFPFCTIEPNEARVNVPDERFEWLCNLYKPKSEVSAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDADIIHVDDTVDPVRDLEVISEELRLKDVEFMKNKIEDLEKSMKRSNDKQLKIELECCLKVKASLEEGKDVRLGDWKAADVEILNTFQLLTAKPVVYLVNMTEKDYQRKKNKFLPKIHAWVQEHGGETIIPFSGVLERNLADMSSPAEVEKYCEENKIQSALPKIIKTGFSAINLIYFFTAGPDEIGKLLTCWLSSLFWDRSISARREGNGDIRFWSPNPPKVKCWQIRRQTKAPQAAGAIHTDFERGFICAEVMKFDDLKEHGSETAVKAAGKYKQEGKTYVAVAKNESHITSMSLLRPYGKVDETDQLRLDASRRTRKRIAVIVLSSVVLVGVVVAVVFGTKNASNNNDDSNNQNGALSTSIKAVCDVTLYPDTCQNAFGPLANSSHLDPGQISKLSVQLALGELSRVADYIFDHAITNSTDNKTILALKNCHELLDLALDHLNISLSSSDITLLKAVDDLKTWLTSAATYQQTCIDGLAEVDPALANLIANYLKNSTELTSNGLAIVSFFSKLTDSLSLRRLMSYEDRQSNGDWVRPILRKLAQSDIRKQADIVVANDGSGKYKTITAALKAVPDKSKKRIVIYVKKGTYKENVEVGKNKWNVVMVGDGMNATTVTAKGKGFIAIDMGFKNTAGPSKHQAVALMSTSDQSIFYRCRMDAYQDTLYTHSNRQFYRECNVYGTVDFIFGNSAVVLQNCTIAPKLPLLGQMNTITAQGRFDPNQNTGISIQGSSIRPFENLKTTKTYLGRPWKNYSTTVFMQSNLGSLIDPTGWLPWVGTSAPDTIFYAEFQNYGPGSSTAKRVKWKGVKNIDIKTAKKFTVSSFIDGKDWISKAQVPFNASL 973
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9404319 9420865 + Lsi02G009460.1 Lsi02g00946 655688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00946 973 Gene3D - 25 304 IPR027417 -
Lsi02g00946 973 SUPERFAMILY Pectin lyase-like 683 970 IPR011050 -
Lsi02g00946 973 CDD YchF 27 302 IPR041706 -
Lsi02g00946 973 TIGRFAM PME_inhib: pectinesterase inhibitor domain 477 640 IPR006501 GO:0004857
Lsi02g00946 973 TIGRFAM TIGR00092: GTP-binding protein YchF 25 316 IPR004396 GO:0005524|GO:0005525|GO:0016887
Lsi02g00946 973 Pfam Pectinesterase 685 958 IPR000070 GO:0030599|GO:0042545
Lsi02g00946 973 Pfam 50S ribosome-binding GTPase 26 141 IPR006073 GO:0005525
Lsi02g00946 973 PANTHER OBG GTPASE FAMILY 1 316 - -
Lsi02g00946 973 PANTHER OBG GTPASE FAMILY 345 415 - -
Lsi02g00946 973 SMART PMEI_2 489 639 IPR006501 GO:0004857
Lsi02g00946 973 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 316 IPR027417 -
Lsi02g00946 973 Gene3D - 680 973 IPR012334 -
Lsi02g00946 973 ProSitePatterns Pectinesterase signature 2. 811 820 IPR033131 -
Lsi02g00946 973 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 25 282 IPR031167 GO:0005525
Lsi02g00946 973 Gene3D - 70 316 IPR012675 -
Lsi02g00946 973 CDD PMEI-like_3 496 645 - -
Lsi02g00946 973 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 493 644 IPR035513 -
Lsi02g00946 973 Pfam Plant invertase/pectin methylesterase inhibitor 493 639 IPR006501 GO:0004857
Lsi02g00946 973 Pfam Protein of unknown function (DUF933) 344 413 IPR013029 -
Lsi02g00946 973 PRINTS GTP1/OBG GTP-binding protein family signature 109 127 IPR006073 GO:0005525
Lsi02g00946 973 PRINTS GTP1/OBG GTP-binding protein family signature 48 66 IPR006073 GO:0005525
Lsi02g00946 973 PRINTS GTP1/OBG GTP-binding protein family signature 27 47 IPR006073 GO:0005525
Lsi02g00946 973 PRINTS GTP1/OBG GTP-binding protein family signature 92 107 IPR006073 GO:0005525
Lsi02g00946 973 SUPERFAMILY TGS-like 344 413 IPR012676 -
Lsi02g00946 973 ProSitePatterns Pectinesterase signature 1. 710 729 IPR018040 -
Lsi02g00946 973 Coils Coil 159 186 - -
Lsi02g00946 973 Gene3D - 135 223 IPR023192 -
Lsi02g00946 973 Gene3D Invertase/pectin methylesterase inhibitor family protein 491 643 IPR035513 -
Lsi02g00946 973 PANTHER OBG-LIKE ATPASE 1 1 316 - -
Lsi02g00946 973 PANTHER OBG-LIKE ATPASE 1 345 415 - -
Lsi02g00946 973 CDD TGS_YchF_OLA1 303 413 IPR013029 -
Lsi02g00946 973 Gene3D - 330 420 IPR012675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00946 Lsi-Chr2:9404319 Lsi07g00642 Lsi-Chr7:6857228 1.27E-145 dispersed
Lsi04g01875 Lsi-Chr4:25887184 Lsi02g00946 Lsi-Chr2:9404319 9.54E-31 dispersed
Lsi04g01876 Lsi-Chr4:25891276 Lsi02g00946 Lsi-Chr2:9404319 5.06E-16 dispersed
Lsi10g00666 Lsi-Chr10:9255903 Lsi02g00946 Lsi-Chr2:9404319 5.51E-06 dispersed
Lsi02g00946 Lsi-Chr2:9404319 Lsi09g01450 Lsi-Chr9:22477690 4.07E-134 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00946 K19788 - csv:101210577 954.125