Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00950 ATGACGTCTTTTGTAAAGCCAGAGAATGCTTTAAAACGAGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCCTTGCAAGCCCTTCATGATCTCATCACTTCAAAGAAATATCGAGCATGGCAGAAACCTCTTGAGAAGATTATGTTCAAGTATGTTGAATTGTGTGTGGATATGAGGAAAGGAAGGTTTGCTAAGGATGGTTTAATTCAATACCGTATTGTTTGCCAGCAAGTCAATGTTACTTCTTTAGAGGAAGTAATCAAGCACTTTATGCATCTTTCTACTGAAAAGGCAGAGCAGGCTCGTAGTCATGCTCAAGCCTTAGAAGAGGCTTTGGACGTTGATGATTTGGAAGCTGATAAAAGACCAGAAGATCTGATGCTTAGTTATGTCAGTGGTGAAAAGGGAAAGGATAGATCTGATCGTGAACTTGTTACCCCTTGGTTTAAATTTCTGTGGGAGACATATCGAACAGTTCTTGAGATACTAAGGAATAACTCAAAGTTGGAGGGACTTTATGCGATGACAGCCCATCGTGCCTTCCAGTTCTGTAAGGTGTACAAAAGAACAACAGAATTTCGCAGATTATGTGAAATTATCAGAAATCATCTAGCAAATCTCAACAAGTATAGAGACCAAAGGGATCGGCCTGATCTTTCTGCTCCAGAGAGCTTGCAATTATACCTTGACACTAGATTTGAACAGCTGAAGGTTGCCACAGAGCTTGAGCTCTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATTCATGGTTTGATGTGCATGGTGAAGAAAACACCTAAACCATCCTTGATGGTGGTGTATTACGTCAAATTAACAGAGATCTTCTGGATATCGAATAGCAATCTTTATCATGCCTATGCATGGCTTAAACTTTTCTCCATTCAGAAAAGTTTCAACAAAAATCTAAGCCAGAAGGATTTGCAGCTGATAGCTTCGTCTGTTCTTTTAGCAACTCTTGCAGTGTCCCCCTATGACTCTAAGCATGGTGCTTCCCATTTAGAACTTGAACATGAGAAAGAGCGGAATTTGAGGATGGCTAATCTTATAGGGTTCAATTTAGATTCCAAACCTGAAAGTAGAGATGTGCTTTCGAGGACAAATCTTCTTTCTGAACTGGTGTCTAAAGGAGTCCTGAGCTGCGCAATTCAGGAAGTTAAAGATCTCTATCATCTTTTGGAGCATGAATTCTTCCCTCTTGATATTGCAACAAAATTGCAACCATTACTTAACAAAATATCAAAGCTTGGAGGTAAGCTTTCATCAGCTTCATCTGTCCCCGAAGTGCAATTGTCCCAATATGTTCCGGCTCTTGAAAAACTTGCTACCCTGAGGCTGCTTCAGCAGGTCTCCAAGGTGTATCAGACTATGAAAATTGAGTCTCTATCGCAGATGATCCCATTTTTTGATTTTTCTCCCGTGGAGAAAATATCAGTTGATGCAGTTAAACAGAATTTCATTGCCATGAAAGTTGATCATTCAAGGAATATTGTGTTATTTGGCAATTTGGGTATCGAATCAGATGGGCTACGAGACCACCTGGCCGTTCTTGCAGAATCCTTAAACAAGGCGAGAGCTATTATCTATCCTGCAGTTAGGAAAGCCTCGAAAACAAGTGATATATTGCCTGATTTGGCAGATATTGTTGATAAAGAGCACAAGAGGTTGCTTGCTCGGAAATCAATAATTGAGAAAAGGAAGGAAGAGCAGGAACGACGACTTTTGGAAATGGAACGCGAGGAGGAATCAAGAAGGTTAAAATTACTGAAGATAACTGAAGAAGCTGAGCAGAAGCGGCTTGCTGCAGAATATGAACAAAGGAAAAATCAACGGCTTCGTAGGGAAATAGAAGAGCGAGAACTTGAAGAAGCACAGGCTTTACTTCAGGAAGCTGAAAAGCGTGTTGGTAAAAAGAAGGGAAGCAGGAAACCGGTTCTTGACTCTGAAAAGTTGTCGAAACAAACTTTAATGCAATTGGCCCTTACTGAACAATTAAGGGAGAGACAGGAAATGGAGAAGAAATTACAAAAGCTAGCCAAAACTATGGATTATCTAGAAAGAGCAAAAAGAGAAGAGGCTGCAACGTTAATTGAAGCTGCATTTCAGCAACGTTTGCTTGAAGAGAGAATGGTTCATGAACGTAATCAGCAGCTGGAGGTTGAGTTAAGCAAGCAGCGCCATGAAGGTGACCTCAAGGAGAAGAATCGATTGGTGAGAATGTTGGAGAAGGCCGAGAGGCGAAAGAAGGAAGAAGCTGAACGCAAGGCTAAATTGGATGAGATTGCTGAGAAGCAGAGACAGAGGGAGCGAGAATTGGAAGAAAAAGAAAGATTGAGGAAAGAAAGTCTCTTTGGTGGTGGCAGATCAGCTGATGCACCTGCTAGACCTGACGTTGCTCCTGCTTCTCGGCCTCTGGAGTCCGGGACTGCTGCTCCTGCCGCTGCTGCGGCTGCCGCACCTACCCCAGGAAAATACGTGCCAAGGTTTCGACGGACTGAAGGCTCCAGCCCTAATGCAGCACCACCTGAATCTGATCGATGGGGAAGCAGCCGGCCTGATACTCGACCTGATAATCGGCCATCTCAACCAGATAGCTGGCGCAGTGATGACCGTAGATCTGCATTTGGAAGTTCAAGGTCATCATGGTCCTCATCCCGAGTTCCTACTCGTACTAGCACGGACCGCTGA 2712 43.1 MTSFVKPENALKRAEELINVGQKQDALQALHDLITSKKYRAWQKPLEKIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARSHAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEGLYAMTAHRAFQFCKVYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISNSNLYHAYAWLKLFSIQKSFNKNLSQKDLQLIASSVLLATLAVSPYDSKHGASHLELEHEKERNLRMANLIGFNLDSKPESRDVLSRTNLLSELVSKGVLSCAIQEVKDLYHLLEHEFFPLDIATKLQPLLNKISKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSKVYQTMKIESLSQMIPFFDFSPVEKISVDAVKQNFIAMKVDHSRNIVLFGNLGIESDGLRDHLAVLAESLNKARAIIYPAVRKASKTSDILPDLADIVDKEHKRLLARKSIIEKRKEEQERRLLEMEREEESRRLKLLKITEEAEQKRLAAEYEQRKNQRLRREIEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLSKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAATLIEAAFQQRLLEERMVHERNQQLEVELSKQRHEGDLKEKNRLVRMLEKAERRKKEEAERKAKLDEIAEKQRQRERELEEKERLRKESLFGGGRSADAPARPDVAPASRPLESGTAAPAAAAAAAPTPGKYVPRFRRTEGSSPNAAPPESDRWGSSRPDTRPDNRPSQPDSWRSDDRRSAFGSSRSSWSSSRVPTRTSTDR 903
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9474921 9484781 + Lsi02G009500.1 Lsi02g00950 655692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00950 903 MobiDBLite consensus disorder prediction 883 903 - -
Lsi02g00950 903 Gene3D UVR domain 217 268 - -
Lsi02g00950 903 Coils Coil 669 699 - -
Lsi02g00950 903 MobiDBLite consensus disorder prediction 856 882 - -
Lsi02g00950 903 SMART PINT_4 441 532 IPR000717 -
Lsi02g00950 903 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 750 842 - -
Lsi02g00950 903 Coils Coil 603 649 - -
Lsi02g00950 903 MobiDBLite consensus disorder prediction 771 792 - -
Lsi02g00950 903 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 750 842 IPR027512 GO:0005852
Lsi02g00950 903 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 750 IPR027512 GO:0005852
Lsi02g00950 903 Coils Coil 732 789 - -
Lsi02g00950 903 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Lsi02g00950 903 Pfam PCI domain 373 509 IPR000717 -
Lsi02g00950 903 MobiDBLite consensus disorder prediction 771 903 - -
Lsi02g00950 903 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 887 IPR027512 GO:0005852
Lsi02g00950 903 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 - -
Lsi02g00950 903 Coils Coil 561 595 - -
Lsi02g00950 903 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 1 750 - -
Lsi02g00950 903 Gene3D - 269 343 - -
Lsi02g00950 903 Gene3D - 359 494 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00950 Lsi-Chr2:9474921 Lsi06g00069 Lsi-Chr6:607397 0 dispersed
Lsi02g00950 Lsi-Chr2:9474921 Lsi02g00951 Lsi-Chr2:9488829 9.23E-51 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00950 K03254 - csv:101215735 1319.29