Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g00951 | ATGACGTCTTTTGTAAAGCCAGAGAATGCTTTAAAACGAGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCCTTGCAAACTCTTCATGATCTTATCACTTCAAAGAAATATCGAGCATGGCAGAAACCTCTTGAGAGGATTATGTTTAAGTATGTTGAGCTCTGTGTGGACATGAGGAAAGGAAGGTTTGCTAAGGATGGTTTAATTCAATACCGTATTGTTTGCCAGCAAGTCAATGTTACTTCTTTGGAGGAAGTAATCAAGCACTTTATGCATCTTTCCACTGAGAAGGCAGAGCAGGCTCGTAGTCAAGCTCAAGCCTTAGAAGAAGCTCTGGACGTTGATGATTTGGAAGCTGATAAAAGACCAGAAGATCTGATGCTTAGTTATGTCAGTGGTGAAAAGGGAAAGGATAGATCTGATCGTGAACTTGTTACCCCCTGGTTTAAATTTCTATGGGAGACATATCGAACGGTTCTTGAGATACTAAGGAATAACTCAAAGTTGGAGGCACTTTATGCGGTAGATGACAGCCCATCGTGCCTTCCAGTTCTAGACCAAAGGGATCGGCCTGACCTTTCTGCTCCAGAGAGCTTGCAATTGTACCTTGACACAAGATTTGAACAGCTGAAGGTTGCCACAGAGCTTGAGCTCTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATTCATGGTCTGATGTGCATGGTGAAGAAAACACCTAAACCATCCTTGATGGTGGTGTATTACGTCAAATTAACAGAGATCTTCTGGATATCGAATAGCAATATTTATCATGCCTATGCATGGCTTAAACTTTTCTCCCTTCAGAAAAGTTTCAACAAAAATCTAAGCCAGAAGGATTTGCAGTTGATAGCTTCATCTGTTCTTTTAGCAGCTCTTGCAGTGTCCCCCTATGACTCTAAGCATGGTGCTTCTCATTTAGAACTTGAACATGAGAAAGAGCGGAATTTGAGGATGGCCAATCTTATAGGGTTCAGTTTAGATTCCAAACTTGAGAGTAGAGATGTGCTTTCAAGGGCAAATCTTTTTTCTGAACTGGTGTCTAAAGGAGTCCTGAGCTGCGCAACTCAGGAAGTTAAAGATCTCTATCATCTTTTGGAACACGAATTCTTCCCTCTTGATCTTGCAACAAAATTGCAACCCTTATTAAACAAAATATCAAAGCTTGGAGGTAAGCTTTCATCAGCTTCATCTGTCCCTGAAGTGCAATTGTCCCAATATGTTCCTGCTCTTGAAAAACTTGCTACCCTGAGGCTGCTTCAGCAGGTCTCCAAGGTGTATCAGACTATGAAAATTGAGAGTCTATCGCAGATGATCCCATTTTTTGATTTTTCTGCCGTGGAGAAAATATCAGTTGATGCAGTTAAACAAAATTTCATTGCCATGAAAGTTGATCATTCGAGGAACATTGTGTTATTTGGCAATTTGGGTATTGAATCAGATGGGCTTCGGGACCACCTGACTGTTCTCGCTGAATCCTTAAACAAAGCAAGAGCTATGATCTATCCTCCAGTTATGAAGGCATCAAAAACAGGTGATATATTGCCTGATTTGGCAGATGTTGTTGATAAGGAGCACAAGAGGCTACTTGCTCGGAAATCTATAATTGAGAAAAGGAAGGAAGAGCAGGAGCGACAACTTTTGGAAATGGAACGCGAGGAGGAATCAAGAAGGTTGAAATTACTGAAGATAACGGAGGAGGCTGAGCAGAAGCGGCTTGCTGCAGAATGTGAACAAAGGAAAAACCAACGGCTTCGAAGGGAAATAGAAGAGCGAGAACTTGAAGAAGCACAGGCTTTACTTCAGGAAGCTGAAAAACGTGTTGGTAAAAAGAAGGGAAGCAGGAAGCCAGTTCTCGACTCTGAGAAGTTGACGAAACAAACTTTAATGCACTTGGCCCTTACTGAACAATTAAGGGAGAGGCAGGAAATGGAGAAGAAATTACAAAAGCTAGCGAAAACTATGGATTATTTAGAAAGAGCAAAAAGAGAAGAGGCTGCAACGTTAATTGAAGCTGCATTTCAGCAACGGTTGCTTGAAGAGAGAATGATTCATGAACGTGATCAGCAGACGACTGCTGTTGCATCATGGGACAATGGTGGAGAGCATCGATCATTGGTCAGAACAGTGATGATTTGTTGTGGTGGCGGCAGCGAAGCAATGTCGCAGGGAGGGGGGATTGAAGGAAACTGGAGGTTGAATCAAGCAAGCAGCGCCATGAAGATGACCTCAAGGAGAAGAATCGATTGGCTAAAATGTTGGAGAGTAAGTGGCGGACGCCTTGTGGGCACATCAGACAAAGTTTTCCAAGAAAGAGTCATAAGTCTTCGCCAAGAGGAATTCAGCAGACGTAGAGCTGACAGAGAAGAACAGATCAGGCAAATAATTCAGGCCCGGAAAGCAGAAAGGGAGGCTAAGAGGAAGAAAATCTTTTATGTAAGGCGTGAAGAGGAGAGGATTAGAACATTGCTTGAAGAGGAAGAAGCACGCAAGCGTGAAGAAGCCGAGAGGCGAAAGAAGGAAGAAGCTGAACGCAAGGCTAAATTGGATGAGATTGCTGAGAAGCAGAGACAGAGGGAGCGAGAATTGGAAGAAAAAGAAAGATTGAGGAAAGAAAGTCTCTTTGGTGGTGGCAGATCAGCTGATGCACCTGCTAGATCTGACGTTGCTCCTGCTTCTCGGCCTCTGGAGTCCGGGACTGCTGCTCCTGCCGCTGCTGCGGCTGCCGCACCGACCCCAGGAAAATACGTGCCAAGGTTTCGACGGACTGAAGGCTCCAGCCCTAATGCACCACCACCTGAGTCTGATCGATGGGGAAGCAGCCGGCCTGATACTCGACCTGATAATCGGCCATCTCAACCAGATAGCTGGCGCGGTGATGACCGTAGACCTGCGTTTGGAAGTTCAAGGTCATCATGGTCCTCATCCCGGGTTCCTACTCGTGCTAGCACGGACCGCTGA | 2988 | 44.65 | MTSFVKPENALKRAEELINVGQKQDALQTLHDLITSKKYRAWQKPLERIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAVDDSPSCLPVLDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISNSNIYHAYAWLKLFSLQKSFNKNLSQKDLQLIASSVLLAALAVSPYDSKHGASHLELEHEKERNLRMANLIGFSLDSKLESRDVLSRANLFSELVSKGVLSCATQEVKDLYHLLEHEFFPLDLATKLQPLLNKISKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSKVYQTMKIESLSQMIPFFDFSAVEKISVDAVKQNFIAMKVDHSRNIVLFGNLGIESDGLRDHLTVLAESLNKARAMIYPPVMKASKTGDILPDLADVVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLLKITEEAEQKRLAAECEQRKNQRLRREIEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLTKQTLMHLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAATLIEAAFQQRLLEERMIHERDQQTTAVASWDNGGEHRSLVRTVMICCGGGSEAMSQGGGIEGNWRLNQASSAMKMTSRRRIDWLKCWRVSGGRLVGTSDKVFQERVISLRQEEFSRRRADREEQIRQIIQARKAEREAKRKKIFYVRREEERIRTLLEEEEARKREEAERRKKEEAERKAKLDEIAEKQRQRERELEEKERLRKESLFGGGRSADAPARSDVAPASRPLESGTAAPAAAAAAAPTPGKYVPRFRRTEGSSPNAPPPESDRWGSSRPDTRPDNRPSQPDSWRGDDRRPAFGSSRSSWSSSRVPTRASTDR | 995 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 9488829 | 9499696 | - | Lsi02G009510.1 | Lsi02g00951 | 655693 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g00951 | 995 | Coils | Coil | 797 | 817 | - | - | |
Lsi02g00951 | 995 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT | 776 | 934 | IPR027512 | GO:0005852 | |
Lsi02g00951 | 995 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT | 188 | 702 | IPR027512 | GO:0005852 | |
Lsi02g00951 | 995 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT | 1 | 177 | IPR027512 | GO:0005852 | |
Lsi02g00951 | 995 | Coils | Coil | 535 | 574 | - | - | |
Lsi02g00951 | 995 | MobiDBLite | consensus disorder prediction | 837 | 884 | - | - | |
Lsi02g00951 | 995 | SMART | PINT_4 | 415 | 506 | IPR000717 | - | |
Lsi02g00951 | 995 | ProSiteProfiles | PCI domain profile. | 290 | 487 | IPR000717 | - | |
Lsi02g00951 | 995 | MobiDBLite | consensus disorder prediction | 837 | 995 | - | - | |
Lsi02g00951 | 995 | Hamap | Eukaryotic translation initiation factor 3 subunit A [EIF3A]. | 1 | 981 | IPR027512 | GO:0005852 | |
Lsi02g00951 | 995 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A | 188 | 702 | - | - | |
Lsi02g00951 | 995 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A | 776 | 934 | - | - | |
Lsi02g00951 | 995 | Coils | Coil | 822 | 881 | - | - | |
Lsi02g00951 | 995 | Gene3D | - | 243 | 317 | - | - | |
Lsi02g00951 | 995 | Gene3D | - | 337 | 468 | - | - | |
Lsi02g00951 | 995 | MobiDBLite | consensus disorder prediction | 976 | 995 | - | - | |
Lsi02g00951 | 995 | Pfam | PCI domain | 350 | 483 | IPR000717 | - | |
Lsi02g00951 | 995 | Gene3D | UVR domain | 191 | 242 | - | - | |
Lsi02g00951 | 995 | Coils | Coil | 577 | 623 | - | - | |
Lsi02g00951 | 995 | MobiDBLite | consensus disorder prediction | 948 | 974 | - | - | |
Lsi02g00951 | 995 | Coils | Coil | 643 | 673 | - | - | |
Lsi02g00951 | 995 | Coils | Coil | 93 | 120 | - | - | |
Lsi02g00951 | 995 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A | 1 | 177 | - | - | |
Lsi02g00951 | 995 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 415 | 506 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g00951 | Lsi-Chr2:9488829 | Lsi06g00069 | Lsi-Chr6:607397 | 4.77E-67 | dispersed | |
Lsi02g00950 | Lsi-Chr2:9474921 | Lsi02g00951 | Lsi-Chr2:9488829 | 9.23E-51 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g00951 | K03254 | - | csv:101209344 | 1410.59 |