Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00951 ATGACGTCTTTTGTAAAGCCAGAGAATGCTTTAAAACGAGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCCTTGCAAACTCTTCATGATCTTATCACTTCAAAGAAATATCGAGCATGGCAGAAACCTCTTGAGAGGATTATGTTTAAGTATGTTGAGCTCTGTGTGGACATGAGGAAAGGAAGGTTTGCTAAGGATGGTTTAATTCAATACCGTATTGTTTGCCAGCAAGTCAATGTTACTTCTTTGGAGGAAGTAATCAAGCACTTTATGCATCTTTCCACTGAGAAGGCAGAGCAGGCTCGTAGTCAAGCTCAAGCCTTAGAAGAAGCTCTGGACGTTGATGATTTGGAAGCTGATAAAAGACCAGAAGATCTGATGCTTAGTTATGTCAGTGGTGAAAAGGGAAAGGATAGATCTGATCGTGAACTTGTTACCCCCTGGTTTAAATTTCTATGGGAGACATATCGAACGGTTCTTGAGATACTAAGGAATAACTCAAAGTTGGAGGCACTTTATGCGGTAGATGACAGCCCATCGTGCCTTCCAGTTCTAGACCAAAGGGATCGGCCTGACCTTTCTGCTCCAGAGAGCTTGCAATTGTACCTTGACACAAGATTTGAACAGCTGAAGGTTGCCACAGAGCTTGAGCTCTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATTCATGGTCTGATGTGCATGGTGAAGAAAACACCTAAACCATCCTTGATGGTGGTGTATTACGTCAAATTAACAGAGATCTTCTGGATATCGAATAGCAATATTTATCATGCCTATGCATGGCTTAAACTTTTCTCCCTTCAGAAAAGTTTCAACAAAAATCTAAGCCAGAAGGATTTGCAGTTGATAGCTTCATCTGTTCTTTTAGCAGCTCTTGCAGTGTCCCCCTATGACTCTAAGCATGGTGCTTCTCATTTAGAACTTGAACATGAGAAAGAGCGGAATTTGAGGATGGCCAATCTTATAGGGTTCAGTTTAGATTCCAAACTTGAGAGTAGAGATGTGCTTTCAAGGGCAAATCTTTTTTCTGAACTGGTGTCTAAAGGAGTCCTGAGCTGCGCAACTCAGGAAGTTAAAGATCTCTATCATCTTTTGGAACACGAATTCTTCCCTCTTGATCTTGCAACAAAATTGCAACCCTTATTAAACAAAATATCAAAGCTTGGAGGTAAGCTTTCATCAGCTTCATCTGTCCCTGAAGTGCAATTGTCCCAATATGTTCCTGCTCTTGAAAAACTTGCTACCCTGAGGCTGCTTCAGCAGGTCTCCAAGGTGTATCAGACTATGAAAATTGAGAGTCTATCGCAGATGATCCCATTTTTTGATTTTTCTGCCGTGGAGAAAATATCAGTTGATGCAGTTAAACAAAATTTCATTGCCATGAAAGTTGATCATTCGAGGAACATTGTGTTATTTGGCAATTTGGGTATTGAATCAGATGGGCTTCGGGACCACCTGACTGTTCTCGCTGAATCCTTAAACAAAGCAAGAGCTATGATCTATCCTCCAGTTATGAAGGCATCAAAAACAGGTGATATATTGCCTGATTTGGCAGATGTTGTTGATAAGGAGCACAAGAGGCTACTTGCTCGGAAATCTATAATTGAGAAAAGGAAGGAAGAGCAGGAGCGACAACTTTTGGAAATGGAACGCGAGGAGGAATCAAGAAGGTTGAAATTACTGAAGATAACGGAGGAGGCTGAGCAGAAGCGGCTTGCTGCAGAATGTGAACAAAGGAAAAACCAACGGCTTCGAAGGGAAATAGAAGAGCGAGAACTTGAAGAAGCACAGGCTTTACTTCAGGAAGCTGAAAAACGTGTTGGTAAAAAGAAGGGAAGCAGGAAGCCAGTTCTCGACTCTGAGAAGTTGACGAAACAAACTTTAATGCACTTGGCCCTTACTGAACAATTAAGGGAGAGGCAGGAAATGGAGAAGAAATTACAAAAGCTAGCGAAAACTATGGATTATTTAGAAAGAGCAAAAAGAGAAGAGGCTGCAACGTTAATTGAAGCTGCATTTCAGCAACGGTTGCTTGAAGAGAGAATGATTCATGAACGTGATCAGCAGACGACTGCTGTTGCATCATGGGACAATGGTGGAGAGCATCGATCATTGGTCAGAACAGTGATGATTTGTTGTGGTGGCGGCAGCGAAGCAATGTCGCAGGGAGGGGGGATTGAAGGAAACTGGAGGTTGAATCAAGCAAGCAGCGCCATGAAGATGACCTCAAGGAGAAGAATCGATTGGCTAAAATGTTGGAGAGTAAGTGGCGGACGCCTTGTGGGCACATCAGACAAAGTTTTCCAAGAAAGAGTCATAAGTCTTCGCCAAGAGGAATTCAGCAGACGTAGAGCTGACAGAGAAGAACAGATCAGGCAAATAATTCAGGCCCGGAAAGCAGAAAGGGAGGCTAAGAGGAAGAAAATCTTTTATGTAAGGCGTGAAGAGGAGAGGATTAGAACATTGCTTGAAGAGGAAGAAGCACGCAAGCGTGAAGAAGCCGAGAGGCGAAAGAAGGAAGAAGCTGAACGCAAGGCTAAATTGGATGAGATTGCTGAGAAGCAGAGACAGAGGGAGCGAGAATTGGAAGAAAAAGAAAGATTGAGGAAAGAAAGTCTCTTTGGTGGTGGCAGATCAGCTGATGCACCTGCTAGATCTGACGTTGCTCCTGCTTCTCGGCCTCTGGAGTCCGGGACTGCTGCTCCTGCCGCTGCTGCGGCTGCCGCACCGACCCCAGGAAAATACGTGCCAAGGTTTCGACGGACTGAAGGCTCCAGCCCTAATGCACCACCACCTGAGTCTGATCGATGGGGAAGCAGCCGGCCTGATACTCGACCTGATAATCGGCCATCTCAACCAGATAGCTGGCGCGGTGATGACCGTAGACCTGCGTTTGGAAGTTCAAGGTCATCATGGTCCTCATCCCGGGTTCCTACTCGTGCTAGCACGGACCGCTGA 2988 44.65 MTSFVKPENALKRAEELINVGQKQDALQTLHDLITSKKYRAWQKPLERIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAVDDSPSCLPVLDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISNSNIYHAYAWLKLFSLQKSFNKNLSQKDLQLIASSVLLAALAVSPYDSKHGASHLELEHEKERNLRMANLIGFSLDSKLESRDVLSRANLFSELVSKGVLSCATQEVKDLYHLLEHEFFPLDLATKLQPLLNKISKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSKVYQTMKIESLSQMIPFFDFSAVEKISVDAVKQNFIAMKVDHSRNIVLFGNLGIESDGLRDHLTVLAESLNKARAMIYPPVMKASKTGDILPDLADVVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLLKITEEAEQKRLAAECEQRKNQRLRREIEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLTKQTLMHLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAATLIEAAFQQRLLEERMIHERDQQTTAVASWDNGGEHRSLVRTVMICCGGGSEAMSQGGGIEGNWRLNQASSAMKMTSRRRIDWLKCWRVSGGRLVGTSDKVFQERVISLRQEEFSRRRADREEQIRQIIQARKAEREAKRKKIFYVRREEERIRTLLEEEEARKREEAERRKKEEAERKAKLDEIAEKQRQRERELEEKERLRKESLFGGGRSADAPARSDVAPASRPLESGTAAPAAAAAAAPTPGKYVPRFRRTEGSSPNAPPPESDRWGSSRPDTRPDNRPSQPDSWRGDDRRPAFGSSRSSWSSSRVPTRASTDR 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9488829 9499696 - Lsi02G009510.1 Lsi02g00951 655693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00951 995 Coils Coil 797 817 - -
Lsi02g00951 995 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 776 934 IPR027512 GO:0005852
Lsi02g00951 995 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 188 702 IPR027512 GO:0005852
Lsi02g00951 995 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 177 IPR027512 GO:0005852
Lsi02g00951 995 Coils Coil 535 574 - -
Lsi02g00951 995 MobiDBLite consensus disorder prediction 837 884 - -
Lsi02g00951 995 SMART PINT_4 415 506 IPR000717 -
Lsi02g00951 995 ProSiteProfiles PCI domain profile. 290 487 IPR000717 -
Lsi02g00951 995 MobiDBLite consensus disorder prediction 837 995 - -
Lsi02g00951 995 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 981 IPR027512 GO:0005852
Lsi02g00951 995 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 188 702 - -
Lsi02g00951 995 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 776 934 - -
Lsi02g00951 995 Coils Coil 822 881 - -
Lsi02g00951 995 Gene3D - 243 317 - -
Lsi02g00951 995 Gene3D - 337 468 - -
Lsi02g00951 995 MobiDBLite consensus disorder prediction 976 995 - -
Lsi02g00951 995 Pfam PCI domain 350 483 IPR000717 -
Lsi02g00951 995 Gene3D UVR domain 191 242 - -
Lsi02g00951 995 Coils Coil 577 623 - -
Lsi02g00951 995 MobiDBLite consensus disorder prediction 948 974 - -
Lsi02g00951 995 Coils Coil 643 673 - -
Lsi02g00951 995 Coils Coil 93 120 - -
Lsi02g00951 995 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 1 177 - -
Lsi02g00951 995 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 415 506 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00951 Lsi-Chr2:9488829 Lsi06g00069 Lsi-Chr6:607397 4.77E-67 dispersed
Lsi02g00950 Lsi-Chr2:9474921 Lsi02g00951 Lsi-Chr2:9488829 9.23E-51 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00951 K03254 - csv:101209344 1410.59