Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01015 ATGAGGACGGAGATGGGGAGGAAACAAGGGGGATCGGGAGCAGCGCCATGCGCCGCATGCAAGCTGCTGAGAAGAAGGTGTGGGGAGGAATGTGTATTTGCTCCATATTTTCCAGCAGATCAACCCCATAAGTTTGCCAATGTTCATAAGGTTTTTGGTGCTAGCAATGTCAACAAAATGCTCCAGGAGTTGCCAATTCACCAACGGGGAGATGCAGTGAGCAGTTTGGTATACGAAGCGAATGCTCGAGTGCGTGACCCGGTGTACGGGTGCGTGGGAGCAATATCGTCTCTGCAGCAGCAGATCGACGCCCTCCAAACTCAGCTGGCTTTGGCTCAAGCCGAGGTGGTGCACCTAAGGGTGCGTCAAACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGATCACCCTCATCCAGGCTAATGGGCTCGCAATCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGGGGACTCAATGTGGTGA 516 52.52 MRTEMGRKQGGSGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10457656 10461900 + Lsi02G010150.1 Lsi02g01015 655757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01015 171 MobiDBLite consensus disorder prediction 130 151 - -
Lsi02g01015 171 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Lsi02g01015 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 161 - -
Lsi02g01015 171 Coils Coil 95 122 - -
Lsi02g01015 171 MobiDBLite consensus disorder prediction 130 153 - -
Lsi02g01015 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 6 161 - -
Lsi02g01015 171 Pfam Lateral organ boundaries (LOB) domain 16 113 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01015 Lsi-Chr2:10457656 Lsi04g01066 Lsi-Chr4:12673905 8.22E-59 dispersed
Lsi02g01697 Lsi-Chr2:22736296 Lsi02g01015 Lsi-Chr2:10457656 7.46E-44 dispersed
Lsi03g00275 Lsi-Chr3:3380756 Lsi02g01015 Lsi-Chr2:10457656 8.31E-47 dispersed
Lsi05g00382 Lsi-Chr5:4824488 Lsi02g01015 Lsi-Chr2:10457656 8.86E-09 dispersed
Lsi05g01263 Lsi-Chr5:20403274 Lsi02g01015 Lsi-Chr2:10457656 2.62E-39 dispersed
Lsi06g01333 Lsi-Chr6:23917405 Lsi02g01015 Lsi-Chr2:10457656 8.64E-08 dispersed
Lsi08g01584 Lsi-Chr8:23868870 Lsi02g01015 Lsi-Chr2:10457656 6.42E-24 dispersed
Lsi09g01900 Lsi-Chr9:27833481 Lsi02g01015 Lsi-Chr2:10457656 9.21E-37 dispersed
Lsi09g01901 Lsi-Chr9:27864606 Lsi02g01015 Lsi-Chr2:10457656 6.66E-35 dispersed
Lsi10g01295 Lsi-Chr10:17172135 Lsi02g01015 Lsi-Chr2:10457656 3.77E-44 dispersed
Lsi02g01015 Lsi-Chr2:10457656 Lsi10g01525 Lsi-Chr10:19619135 2.23E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24804 PF03195 LOB 2.50E-43 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01015 - - csv:101202930 289.656