Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01015 ATGAGGACGGAGATGGGGAGGAAACAAGGGGGATCGGGAGCAGCGCCATGCGCCGCATGCAAGCTGCTGAGAAGAAGGTGTGGGGAGGAATGTGTATTTGCTCCATATTTTCCAGCAGATCAACCCCATAAGTTTGCCAATGTTCATAAGGTTTTTGGTGCTAGCAATGTCAACAAAATGCTCCAGGAGTTGCCAATTCACCAACGGGGAGATGCAGTGAGCAGTTTGGTATACGAAGCGAATGCTCGAGTGCGTGACCCGGTGTACGGGTGCGTGGGAGCAATATCGTCTCTGCAGCAGCAGATCGACGCCCTCCAAACTCAGCTGGCTTTGGCTCAAGCCGAGGTGGTGCACCTAAGGGTGCGTCAAACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGATCACCCTCATCCAGGCTAATGGGCTCGCAATCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGGGGACTCAATGTGGTGA 516 52.52 MRTEMGRKQGGSGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10457656 10461900 + Lsi02G010150.1 Lsi02g01015 655757

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01015 171 MobiDBLite consensus disorder prediction 130 151 - -
Lsi02g01015 171 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Lsi02g01015 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 161 - -
Lsi02g01015 171 Coils Coil 95 122 - -
Lsi02g01015 171 MobiDBLite consensus disorder prediction 130 153 - -
Lsi02g01015 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 6 161 - -
Lsi02g01015 171 Pfam Lateral organ boundaries (LOB) domain 16 113 IPR004883 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01015 - - - csv:101202930 289.656
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01015 Lsi-Chr2:10457656 Lsi04g01066 Lsi-Chr4:12673905 8.22E-59 dispersed
Lsi02g01697 Lsi-Chr2:22736296 Lsi02g01015 Lsi-Chr2:10457656 7.46E-44 dispersed
Lsi03g00275 Lsi-Chr3:3380756 Lsi02g01015 Lsi-Chr2:10457656 8.31E-47 dispersed
Lsi05g00382 Lsi-Chr5:4824488 Lsi02g01015 Lsi-Chr2:10457656 8.86E-09 dispersed
Lsi05g01263 Lsi-Chr5:20403274 Lsi02g01015 Lsi-Chr2:10457656 2.62E-39 dispersed
Lsi06g01333 Lsi-Chr6:23917405 Lsi02g01015 Lsi-Chr2:10457656 8.64E-08 dispersed
Lsi08g01584 Lsi-Chr8:23868870 Lsi02g01015 Lsi-Chr2:10457656 6.42E-24 dispersed
Lsi09g01900 Lsi-Chr9:27833481 Lsi02g01015 Lsi-Chr2:10457656 9.21E-37 dispersed
Lsi09g01901 Lsi-Chr9:27864606 Lsi02g01015 Lsi-Chr2:10457656 6.66E-35 dispersed
Lsi10g01295 Lsi-Chr10:17172135 Lsi02g01015 Lsi-Chr2:10457656 3.77E-44 dispersed
Lsi02g01015 Lsi-Chr2:10457656 Lsi10g01525 Lsi-Chr10:19619135 2.23E-71 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g00839 . 8 225 AS2 family AT1G65620 66.4 3.8e-69 258.1
Lsi10g00645 . 2 110 AS2 family AT1G65620 81.7 8.3e-48 187.2
Lsi06g01582 CCT,ECH 22 205 AS2 family AT1G65620 53.8 2.4e-47 185.7
Lsi03g01359 . 3 125 AS2 family AT1G65620 65.9 2.8e-43 172.2
Lsi02g00402 CCT,ECH 12 112 AS2 family AT1G65620 71.3 6.6e-37 151.0
Lsi10g00645 . 1 122 AS2 family AT5G66870 86.9 1.4e-57 220.3
Lsi11g00839 . 11 119 AS2 family AT5G66870 77.1 6.7e-44 174.9
Lsi06g01582 CCT,ECH 20 132 AS2 family AT5G66870 68.1 2.2e-39 159.8
Lsi03g01359 . 7 113 AS2 family AT5G66870 68.2 4.9e-39 158.7
Lsi02g00402 CCT,ECH 12 125 AS2 family AT5G66870 64.0 1.0e-36 151.0
Lsi10g01458 . 1 122 AS2 family AT5G66870 56.6 1.3e-36 150.6
Lsi10g00645 . 4 118 AS2 family AT2G23660 69.6 3.0e-44 176.0
Lsi11g00839 . 13 119 AS2 family AT2G23660 69.2 5.8e-40 161.8
Lsi06g01582 CCT,ECH 27 132 AS2 family AT2G23660 64.2 1.9e-38 156.8
Lsi03g01359 . 7 113 AS2 family AT2G23660 61.7 6.0e-37 151.8
Lsi03g01359 . 4 114 AS2 family AT3G27650 83.8 7.5e-52 200.3
Lsi06g01582 CCT,ECH 7 133 AS2 family AT3G27650 72.4 3.9e-48 188.0
Lsi11g00839 . 10 119 AS2 family AT3G27650 69.1 1.9e-42 169.1
Lsi02g00402 CCT,ECH 12 113 AS2 family AT3G27650 73.5 3.9e-40 161.4
Lsi10g00645 . 4 112 AS2 family AT3G27650 67.9 3.9e-40 161.4
Lsi06g01582 CCT,ECH 22 132 AS2 family AT5G63090 93.7 4.1e-57 218.0
Lsi03g01359 . 2 125 AS2 family AT5G63090 77.4 1.2e-51 199.9
Lsi02g00402 CCT,ECH 12 112 AS2 family AT5G63090 82.2 2.1e-45 179.1
Lsi11g00839 . 10 129 AS2 family AT5G63090 70.0 1.4e-44 176.4
Lsi10g00645 . 2 110 AS2 family AT5G63090 70.6 1.2e-40 163.3
Lsi02g01015 . 15 126 AS2 family AT5G63090 64.3 3.3e-38 155.2
Lsi04g01066 . 4 106 AS2 family AT5G63090 69.9 1.2e-37 153.3
Lsi04g01066 . 3 135 AS2 family AT2G30130 79.7 2.0e-54 209.1
Lsi10g01458 . 2 133 AS2 family AT2G30130 72.0 1.9e-49 192.6
Lsi02g01015 . 10 130 AS2 family AT2G30130 68.6 1.3e-45 179.9
Lsi10g01525 . 10 116 AS2 family AT2G30130 65.5 2.6e-38 155.6
Lsi04g01033 . 39 150 AS2 family AT2G30130 67.0 9.8e-38 153.7
Lsi06g01582 CCT,ECH 27 130 AS2 family AT2G30130 68.3 1.3e-37 153.3
Lsi11g01618 . 11 163 AS2 family AT2G30130 52.3 2.9e-37 152.1
Lsi11g00839 . 14 116 AS2 family AT2G30130 67.0 6.4e-37 151.0
Lsi02g01015 . 4 171 AS2 family AT1G31320 74.7 1.5e-66 249.2
Lsi10g01525 . 1 162 AS2 family AT1G31320 67.6 6.0e-55 210.7
Lsi04g01066 . 2 162 AS2 family AT1G31320 56.4 2.5e-45 178.7
Lsi10g01458 . 6 122 AS2 family AT1G31320 64.1 4.2e-40 161.4
Lsi11g01618 . 9 168 AS2 family AT1G31320 53.1 5.5e-40 161.0
Lsi04g01033 . 48 160 AS2 family AT1G31320 62.8 1.1e-37 153.3
Lsi06g01582 CCT,ECH 28 139 AS2 family AT1G31320 62.5 7.4e-37 150.6
Lsi02g01442 . 34 210 AS2 family AT2G28500 55.0 1.8e-46 183.0
Lsi02g01441 . 14 129 AS2 family AT2G28500 69.8 6.5e-44 174.5
Lsi04g00812 . 56 147 AS2 family AT2G28500 88.0 3.5e-42 168.7
Lsi02g01697 . 12 105 AS2 family AT2G28500 75.5 4.8e-39 158.3
Lsi04g01066 . 5 113 AS2 family AT2G28500 65.1 1.3e-36 150.2
Lsi04g00812 . 56 210 AS2 family AT1G07900 68.8 6.9e-44 174.1
Lsi10g01295 . 31 220 AS2 family AT1G07900 58.2 6.5e-42 167.5
Lsi02g01442 . 21 210 AS2 family AT1G07900 53.6 1.1e-41 166.8
Lsi02g01441 . 14 129 AS2 family AT1G07900 66.4 1.2e-40 163.3
Lsi02g01697 . 6 104 AS2 family AT1G07900 73.7 6.1e-40 161.0
Lsi02g01015 . 11 171 AS2 family AT1G16530 53.7 6.2e-41 164.1
Lsi10g01525 . 6 162 AS2 family AT1G16530 51.8 4.0e-40 161.4
Lsi04g01066 . 5 110 AS2 family AT1G16530 67.3 4.2e-37 151.4
Lsi04g01033 . 1 157 AS2 family AT2G30340 69.6 2.4e-58 222.6
Lsi03g00275 . 9 153 AS2 family AT2G30340 72.3 4.2e-55 211.8
Lsi04g01033 . 32 157 AS2 family AT2G40470 88.1 9.4e-60 226.9
Lsi03g00275 . 33 152 AS2 family AT2G40470 84.2 4.1e-55 211.5
Lsi02g01015 . 16 126 AS2 family AT2G40470 64.0 3.5e-38 155.2
Lsi03g00297 . 3 153 AS2 family AT3G11090 60.0 8.7e-43 170.2
Lsi05g01004 . 1 117 AS2 family AT2G42440 72.6 6.8e-44 174.5
Lsi02g02174 . 14 148 AS2 family AT2G42440 64.0 2.9e-42 169.1
Lsi05g01004 . 4 117 AS2 family AT3G58190 78.9 5.9e-47 184.5
Lsi02g02174 . 14 128 AS2 family AT3G58190 76.1 6.5e-46 181.0
Lsi05g01003 . 23 118 AS2 family AT3G58190 74.0 1.2e-39 160.2
Lsi03g01564 . 27 153 AS2 family AT3G58190 59.1 1.4e-37 153.3
Lsi04g00900 . 13 121 AS2 family AT3G58190 67.9 3.2e-37 152.1
Lsi05g01004 . 1 171 AS2 family AT2G31310 51.1 2.3e-39 159.1
Lsi05g01003 . 23 228 AS2 family AT2G42430 54.1 4.0e-52 201.8
Lsi05g01004 . 3 94 AS2 family AT2G42430 80.4 6.6e-39 157.9
Lsi03g01564 . 34 174 AS2 family AT2G42430 56.7 1.1e-38 157.1
Lsi09g01901 . 29 118 AS2 family AT2G42430 80.0 4.3e-38 155.2
Lsi02g02174 . 14 116 AS2 family AT2G42430 70.9 1.4e-36 150.2
Lsi09g01901 . 29 115 AS2 family AT4G00220 87.4 5.0e-41 164.9
Lsi09g01900 . 31 214 AS2 family AT4G00220 50.8 4.7e-39 158.3
Lsi09g01901 . 29 300 AS2 family AT2G45420 54.1 4.5e-62 235.0
Lsi03g01564 . 35 141 AS2 family AT2G45420 74.8 1.2e-41 167.2
Lsi02g02174 . 14 120 AS2 family AT2G45420 69.2 1.3e-40 163.7
Lsi05g01003 . 24 119 AS2 family AT2G45420 78.1 1.7e-40 163.3
Lsi09g01900 . 31 158 AS2 family AT2G45420 57.5 2.1e-38 156.4
Lsi05g01004 . 7 95 AS2 family AT2G45420 76.4 1.1e-36 150.6
Lsi03g01564 . 35 148 AS2 family AT3G03760 86.8 2.4e-50 196.1
Lsi02g02174 . 14 118 AS2 family AT4G00210 66.7 2.9e-38 155.6
Lsi03g01564 . 28 136 AS2 family AT4G00210 69.7 8.6e-38 154.1
Lsi09g01901 . 29 115 AS2 family AT2G45410 79.3 3.0e-39 158.7
Lsi03g01564 . 35 136 AS2 family AT2G45410 68.6 6.3e-37 151.0
Lsi05g01003 . 24 119 AS2 family AT2G45410 69.8 6.3e-37 151.0
Lsi04g00900 . 14 144 AS2 family AT5G06080 65.4 2.2e-44 175.6
Lsi02g02933 . 29 137 AS2 family AT3G13850 76.1 1.7e-43 173.3
Lsi05g00382 . 1 162 AS2 family AT1G68510 65.3 9.3e-59 223.8
Lsi06g01333 . 1 159 AS2 family AT1G68510 61.8 1.8e-54 209.5
Lsi04g00252 . 1 136 AS2 family AT1G68510 65.5 5.1e-49 191.4
Lsi01g00909 . 1 104 AS2 family AT1G68510 64.4 7.4e-40 161.0
Lsi04g01494 . 1 126 AS2 family AT1G68510 57.9 1.5e-37 153.3
Lsi05g00382 . 1 302 AS2 family AT1G67100 50.2 2.1e-71 265.8
Lsi06g01333 . 1 140 AS2 family AT1G67100 73.2 7.6e-61 230.7
Lsi04g00252 . 1 132 AS2 family AT1G67100 69.3 2.9e-52 202.2
Lsi01g00909 . 1 110 AS2 family AT1G67100 67.3 1.7e-44 176.4
Lsi04g01494 . 1 110 AS2 family AT1G67100 63.6 2.2e-39 159.5
Lsi05g00382 . 1 302 AS2 family AT3G02550 55.6 1.4e-79 293.1
Lsi06g01333 . 1 160 AS2 family AT3G02550 68.9 7.8e-62 234.2
Lsi04g00252 . 1 141 AS2 family AT3G02550 64.1 8.4e-48 187.6
Lsi01g00909 . 1 136 AS2 family AT3G02550 55.1 4.9e-40 161.8
Lsi04g01494 . 1 110 AS2 family AT3G02550 63.6 1.1e-36 150.6
Lsi01g00909 . 1 236 AS2 family AT5G67420 58.9 1.5e-70 263.1
Lsi04g01494 . 1 127 AS2 family AT5G67420 65.9 1.0e-47 187.2
Lsi05g00382 . 3 122 AS2 family AT5G67420 65.8 2.8e-45 179.1
Lsi06g01333 . 3 112 AS2 family AT5G67420 61.8 2.1e-40 162.9
Lsi04g00252 . 3 113 AS2 family AT5G67420 61.6 1.5e-38 156.8
Lsi01g00909 . 1 235 AS2 family AT3G49940 59.9 1.5e-70 263.1
Lsi04g01494 . 1 127 AS2 family AT3G49940 70.2 7.1e-49 191.0
Lsi05g00382 . 3 157 AS2 family AT3G49940 52.8 6.2e-45 177.9
Lsi06g01333 . 3 112 AS2 family AT3G49940 62.7 1.6e-40 163.3
Lsi04g00252 . 3 113 AS2 family AT3G49940 63.4 4.3e-38 155.2
Lsi01g00909 . 1 236 AS2 family AT4G37540 55.9 1.9e-67 252.7
Lsi04g01494 . 1 203 AS2 family AT4G37540 50.4 3.9e-52 201.8
Lsi05g00382 . 3 113 AS2 family AT4G37540 65.8 8.2e-42 167.5
Lsi06g01333 . 3 113 AS2 family AT4G37540 63.1 4.5e-40 161.8
Lsi04g00252 . 3 126 AS2 family AT4G37540 57.3 9.3e-38 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000955 1 3 2 2 2 3 4 3 3 3 3 3 3 4 3 3 3 2 3 3 3 2 3 3 3 3 3 3 3 2 84
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24804 PF03195 LOB 2.50E-43 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g01015 Lsi_Chr02 FPKM 0.706548 0.400164 1.981767 1.645872 1.295925 1.694709 1.38209 0.936161 0.883819 0.913194