Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01027 ATGGCATCCTTCACTAAGCTCATCTCAATCTTCTTCTTTCTCATCTGTTTTCTCACAACCCAAGCCGTTTCACAATCTAATGAATGTGAAACTACAGCCAATTCATGCACCAATAAAGACCAAGCTTTACGTCTTAAAATCATTGCCATCTTCTCGATCCTCATTGCGAGTGTGCTCGGCGTTGGCTCGCCGCTCGTCACCCGATCGATCCCGATGTTGCACCCCGATAGAAACATGTTCATCATCCTCAAAGCCTTCGCAGCGGGGATCATTCTCGCCACCGGTTTCATGCACGTTTTGCCCGATTCTTTCGACATGCTTTGGTCGAATTGTCTCAAGGAGAATCCATGGCATAAGTTTCCCTTTTCAGGTTTCGTTGCCATGATGTCGGCCATCGTCACGCTCATGGTGGATTCTATGGCTACTAGTTTATATACTAAGAAACATACCGAAGTTATGCCTGAGAATTCTCCGAGAGGAGATGATCATGAGCTGCCTGTAGTCAGTGGCGGCCATATCCATGGCCACCATCATAGGGACTCCAAAGAAACTAATCCTGGTTCTCAACTCTTGCGCTATCGTGTTGTTGCCATGGTTTTGGAACTGGGAATTGTGGTCCATTCAGTTGTGATTGGACTTTCACTGGGAGCCACAAATGACACTTGCACAATCAAAGGTCTAGTGGCGGCTCTTTGTTTCCATCAAATGTTTGAAGGGATGGGTCTTGGTGGCTGCATTCTTCAGGCAGAGTACAAGTGGATGAAGAAAGCAATAATGGTATTCTTTTTCTCAGTGACAACTCCATTTGGAATAGCCCTTGGAATAGGGTTATCAAAGACATACAAAGAAAACAGTCCTAGTGCACTTATCACTGTGGGATTGCTAAATGCTTCTTCAGCTGGTCTTCTCATTTACATGGCTTTGGTGGATCTTCTTTCTGCTGACTTTATGGGCCCAAAGTTGCAAGGAAGCATCAAACTTCAAGTCAAATCCTATATTGCTGTGCTCTTGGGAGCTGGTGCCATGTCTTTAATGGCAAAGTGGGCTTGA 1050 45.33 MASFTKLISIFFFLICFLTTQAVSQSNECETTANSCTNKDQALRLKIIAIFSILIASVLGVGSPLVTRSIPMLHPDRNMFIILKAFAAGIILATGFMHVLPDSFDMLWSNCLKENPWHKFPFSGFVAMMSAIVTLMVDSMATSLYTKKHTEVMPENSPRGDDHELPVVSGGHIHGHHHRDSKETNPGSQLLRYRVVAMVLELGIVVHSVVIGLSLGATNDTCTIKGLVAALCFHQMFEGMGLGGCILQAEYKWMKKAIMVFFFSVTTPFGIALGIGLSKTYKENSPSALITVGLLNASSAGLLIYMALVDLLSADFMGPKLQGSIKLQVKSYIAVLLGAGAMSLMAKWA 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10757018 10759803 - Lsi02G010270.1 Lsi02g01027 655769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01027 349 PANTHER ZINC/IRON TRANSPORTER 11 349 - -
Lsi02g01027 349 PANTHER ZINC TRANSPORTER 10-RELATED 11 349 - -
Lsi02g01027 349 Pfam ZIP Zinc transporter 44 346 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Lsi02g01027 349 TIGRFAM zip: ZIP zinc/iron transport family 32 349 IPR004698 GO:0005385|GO:0016021|GO:0071577
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00302 Lsi-Chr1:2694654 Lsi02g01027 Lsi-Chr2:10757018 7.28E-125 dispersed
Lsi02g01027 Lsi-Chr2:10757018 Lsi11g01590 Lsi-Chr11:24288182 2.04E-111 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01027 K14709 - csv:101221552 641.343