Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01032 ATGGCCGCAAAAGATGCAGAGCAAGTCTTGGACGTGCAGTCCGTTGTCGAAGCAGTAGTTGCAAACGAAGACGCCGATGTTCCTAGCTACGAAGTAGAAAGCCTCTGCATGCGCTGCGGCGAAAACGGGATAACAAGATTTTTGTTAACTTTAATTCCACACTTCAGAAAGATCTTGTTGTCAGCCTTTGAATGTCCACATTGTGGTGAGAGGAACAATGAAGTCCAGTTTGCTGGTGAGATTCAGCCACGAGGCTGTTGCTACTGTTTGGAGGTTCATGCAGGCGACCAGAAGATGCTCAATCGACAAGTGGTAAAATCTGAATCTGCCATCATTAAGATCCCAGAATTGGATTTCGAGATTCCAGCAGAGGCTCAACGTGGAACTCTATCAACTGTGGAAGGTATATTGGTACGAGCCGTAGATGAATTGGAAGCCCTTCAAGAGGAACGCAGGAAGGTGGATCCTCAGACTGCTGAAGCAATAGACCAGTTTCTCCTGAAACTGAAAGCTTGTGCCATGGGAGATTCATCTTTCTCCTTCGTCTTGGATGATCCAGCTGGAAACAGCTTCATTGAGAACCCATTTGCACCATCCAAAGATCCATCATTAAGTATCAAGTTTTATGAGCGGACTCCAGAACAACAAGCATCGTTGGGTTATTACGTTGAACCATCACAACCAGCAGAAGCTGAGGGTGGAGCATCGACAGGTGGAGTTGATGCTTCTAATCAAGTTAGAGGAGAGGCACATGGATCTGTAGGAGCAACGGCTGGCCATCGAGCAATAGCTCAAAGTAACAGTGCAGAGATTGCTGAGGCCTTGTTTCATTACACTGCACCAGAAGAAGTGATGACTTTCCCATCAACATGTGGAGCTTGTGCAGTTAGTTGTGAGACTCGAATGTTCGTAACCAAAATTCCCTACTTCCAAGAAGTGATTGTCATGGCAACTACTTGTGATGCTTGTGGTTACCGTAGTTCTGAGCTGAAGCCTGGAGGGCGAATCCCTGAAAAAGGAAAGATAATTAGTCTTTGTGTGAAGGATGTTAGAGATCTCAGTCGAGATGTGATAAAGTTTGACGAAGTTATGTTTTTTTACCAGTCAGATACTGCAAGTGTAAAAGTCCCAGATCTTGACTTGGAGCTGACTAGTGGCACTCTTGGGGGAATTGTTACAACTGTTGAAGGTTTAATCACAAAGATAAGTGAAAGAACTATGAAAGAAAAGTTGTTGGAGTTTTCAGATAATCATACCCACACAAGAAAATCCCAAAAACCCACACGAAGAATCCAACGAAGTAGTTTGCAAAAGAAGAGAAACCTTGAAGAAGAAGCAAAAGTCGAGAGGAGAAGAGAAGACCCGTTGACCAGCCGTCGAGGAAGAAGTAGAAGTCGTTCGAGGAGGTCTTTGTTAGTTGGATGCGAGAGCCACGAGAAGAAGAGTCAAATCTCTATTGAGAAAGCTTTTTGTTTAACTACAAACACTTTGGTCGTTGGTGGTCGAGGCATAGTGGTGGACGGCGAAGGAGTTAAGGATGAAGCTCATGGTTGTCTTGAGAGAGTACATGGATTTACTTTTGGAGATAGTCTTGATGAAAACAAAAGAAACAAATGGTTGGACTTCAAAACAAGGCTAACCAAGGTACATGATCATGGTTTTATGCGTATCTTGTGGATGAAGTCGCTCTTGAGTTTGGAACAGCCTTGGACTCTAATCCTTGATGATGCACTAGCAAATTCGTTTATTGCACCAGTGACTGATGATTTGAAAGATGACCATCAGTTAACATACGAGGAATACGAGCGATCCTGGGAACAGAACGAGGAACTCGGTTTGAACGACATGGACACTTCGGCTGCTGATGCTGCTTATAATTAA 1881 44.02 MAAKDAEQVLDVQSVVEAVVANEDADVPSYEVESLCMRCGENGITRFLLTLIPHFRKILLSAFECPHCGERNNEVQFAGEIQPRGCCYCLEVHAGDQKMLNRQVVKSESAIIKIPELDFEIPAEAQRGTLSTVEGILVRAVDELEALQEERRKVDPQTAEAIDQFLLKLKACAMGDSSFSFVLDDPAGNSFIENPFAPSKDPSLSIKFYERTPEQQASLGYYVEPSQPAEAEGGASTGGVDASNQVRGEAHGSVGATAGHRAIAQSNSAEIAEALFHYTAPEEVMTFPSTCGACAVSCETRMFVTKIPYFQEVIVMATTCDACGYRSSELKPGGRIPEKGKIISLCVKDVRDLSRDVIKFDEVMFFYQSDTASVKVPDLDLELTSGTLGGIVTTVEGLITKISERTMKEKLLEFSDNHTHTRKSQKPTRRIQRSSLQKKRNLEEEAKVERRREDPLTSRRGRSRSRSRRSLLVGCESHEKKSQISIEKAFCLTTNTLVVGGRGIVVDGEGVKDEAHGCLERVHGFTFGDSLDENKRNKWLDFKTRLTKVHDHGFMRILWMKSLLSLEQPWTLILDDALANSFIAPVTDDLKDDHQLTYEEYERSWEQNEELGLNDMDTSAADAAYN 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10883887 10908088 + Lsi02G010320.1 Lsi02g01032 655774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01032 626 PANTHER ZINC FINGER PROTEIN ZPR1-RELATED 3 427 - -
Lsi02g01032 626 PANTHER ZINC FINGER PROTEIN ZPR1-RELATED 492 626 - -
Lsi02g01032 626 MobiDBLite consensus disorder prediction 413 470 - -
Lsi02g01032 626 Coils Coil 130 150 - -
Lsi02g01032 626 PANTHER ZINC FINGER PROTEIN ZPR1 3 427 IPR040141 -
Lsi02g01032 626 PANTHER ZINC FINGER PROTEIN ZPR1 492 626 IPR040141 -
Lsi02g01032 626 Gene3D ZPR1, A/B domain 80 221 IPR042451 -
Lsi02g01032 626 Gene3D ZPR1, A/B domain 335 613 IPR042451 -
Lsi02g01032 626 SMART zpr1 289 467 IPR004457 GO:0008270
Lsi02g01032 626 SMART zpr1 34 194 IPR004457 GO:0008270
Lsi02g01032 626 Pfam ZPR1 zinc-finger domain 34 193 IPR004457 GO:0008270
Lsi02g01032 626 Pfam ZPR1 zinc-finger domain 289 433 IPR004457 GO:0008270
Lsi02g01032 626 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 290 432 IPR004457 GO:0008270
Lsi02g01032 626 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 36 218 IPR004457 GO:0008270
Lsi02g01032 626 MobiDBLite consensus disorder prediction 436 461 - -
Lsi02g01032 626 Gene3D ZPR1, zinc finger domain 26 79 IPR042452 -
Lsi02g01032 626 Gene3D ZPR1, zinc finger domain 279 334 IPR042452 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01032 K06874 - csv:101208000 741.495