Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01068 ATGGCTCTTTGGGACTTCCTTTTGCTGTTTTTCTTCTTGATCTCTGGTTATATTCCATTTATTCGTGCTCTTACTGATGCTTCTGATGTTCAAGCTTTGCAAGTTATATACACCTCATTGAACAGTCCTCCTCAGCTGACTGGTTGGATTGGTAATGGAGGCGATCCATGTGTAGAGTCATGGAAAGGGGTGACTTGTGAAGGATCTGCTGTTGTTTCCATTGAGATTTCTGGGTTAGGGCTGAATGGAACGATGGGTTATGCGCTCTCAAGTTTTTTGTCACTGAAAAAGCTTGATATGAGCGACAACAATATTCATGACACGATTCCTTACCAATTGCCGCCGAACCTCACTAGCCTAAATATGGCAAAAAACAGCTTAAGTGGTAATCTTCCTTATTCCTTATCCACCATGGCTTCTCTCAATTATTTGAATATGAGCCACAATTTGCTATCTCAGGTGATAGGAGACGTTTTCACCAATCTTACTACCCTGGGGACCTTGGACCTTTCTTTCAACAACTTTACTGGGGATCTTCCCAAGTCCTTGGGAACTTTATCCAATGTTTCTTCCCTCTTTTTGCAGAACAACCAATTGACTGGCTCTCTCAATATTCTTATTGATTTGCCTCTGACCACTCTAAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGGTTGAAAATTTCATGTATGATGGAAATTCATTTGACAATAGTCCTGCACCTCCTCCACCGCCTTTTACTCCACCACCTCCTGGTAGATCTCGTAGCAGCCCCAAACATCCTGGGTCTAGCGGTGGCACCCATACTGCACCAAGTTCTAATGGGAGCTCATCCCACTCGAACAAAGGCTTGCCAGTTTTGGCTATAGTGGGGATAATTTTGGGTGCTATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCTGTCTGCATCCAGAAGAGAAAACGGAAGAATATTGGTCTAAGAGCTTCCAGTGGAAGGCTGTCCATTGCCACTAGTGTGAATGCTGAGGTGCAAGAGCATCGGGTAAAAAGTGTTGCTGCTGTTGCCGATATTAAGCCTCTTCCTGCTGAGAAAATGAATCCTGAGAGATTGCAGGCGAAAAATGGATCAGTGAAAAGAATAAAGTCCCCTATTACTGCTACTTCTTACACCGTTGCTTCTCTTCAAAGTGCAACAAATAGTTTTAGCCAAGAATGCATAGTTGGTGAAGGTTCTCTTGGCCGTGTTTACAAAGCCGACTTTCCTAACGGGAAGATAATGGCGGTTAAGAAAATCGATAATGCAGCGTTGTCACTACAGGAAGAAGACAATTTTCTTGAAGCGGTTTCAAACATGTCAAGATTGAGGCATACAAACATTGTCACACTAAATGGTTATTGTGCAGAACATGGTCAGCGTCTTCTAGTTTACGAGTTCATTGGAAATGGAAGTTTACATGACATGCTCCATTTTGCTGAAGAAAGTAGTAAGACACTGACTTGGAACGCACGTGTCCGGGTAGCACTTGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTTTGCTTGCCTTCTGTTGTACATAGAAACTTGAAGACTGCAAACATATTACTTGATGAAGATCTCAACCCCCATTTGTCAGATTGTGGTTTGGCTGCTTTAACACCCAACACAGAGCGGCAGATTTCTACTCAGATGGTTGGTTCTTTTGGCTATAGTGCTCCGGAATTTGCCTTGTCGGGAATATACACCGTCAAAAGTGACGTGTACAGCTTTGGAGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCGCTTGACAGTTCCAGGGTGAGATCAGAGCAGTCACTTGTGAGATGGGCTACTCCCCAACTTCATGATATCGACGCCTTAGCAAAAATGGTAGATCCTACTCTAAATGGAATGTACCCTGCAAAATCTCTGTCGCGCTTTGCCGACATCATTGCTCTCTGTGTTCAGCCTGAGCCCGAATTTCGACCTCCCATGTCCGAAGTAGTACAAGCATTGGTGCGTTTAGTGCAAAGAGCGAGTGTGGTAAAAAGGCATTCGAGCGACGAGACGGGTTTCAGTTACAAAACGCCCGAGCACGATGCAGTTGAGTTGCCATTTTGA 2136 43.82 MALWDFLLLFFFLISGYIPFIRALTDASDVQALQVIYTSLNSPPQLTGWIGNGGDPCVESWKGVTCEGSAVVSIEISGLGLNGTMGYALSSFLSLKKLDMSDNNIHDTIPYQLPPNLTSLNMAKNSLSGNLPYSLSTMASLNYLNMSHNLLSQVIGDVFTNLTTLGTLDLSFNNFTGDLPKSLGTLSNVSSLFLQNNQLTGSLNILIDLPLTTLNVANNNFSGWIPQELKSVENFMYDGNSFDNSPAPPPPPFTPPPPGRSRSSPKHPGSSGGTHTAPSSNGSSSHSNKGLPVLAIVGIILGAIIFVLIVLVAFAVCIQKRKRKNIGLRASSGRLSIATSVNAEVQEHRVKSVAAVADIKPLPAEKMNPERLQAKNGSVKRIKSPITATSYTVASLQSATNSFSQECIVGEGSLGRVYKADFPNGKIMAVKKIDNAALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFIGNGSLHDMLHFAEESSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEDLNPHLSDCGLAALTPNTERQISTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDETGFSYKTPEHDAVELPF 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11694089 11699986 + Lsi02G010680.1 Lsi02g01068 655810

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01068 711 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Lsi02g01068 711 SUPERFAMILY Protein kinase-like (PK-like) 383 677 IPR011009 -
Lsi02g01068 711 MobiDBLite consensus disorder prediction 264 286 - -
Lsi02g01068 711 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 8-LIKE ISOFORM X1 14 702 - -
Lsi02g01068 711 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 702 - -
Lsi02g01068 711 Gene3D Phosphorylase Kinase; domain 1 364 480 - -
Lsi02g01068 711 SUPERFAMILY L domain-like 25 232 - -
Lsi02g01068 711 Pfam Protein kinase domain 405 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01068 711 CDD STKc_IRAK 409 680 - -
Lsi02g01068 711 ProSiteProfiles Protein kinase domain profile. 403 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01068 711 MobiDBLite consensus disorder prediction 244 263 - -
Lsi02g01068 711 MobiDBLite consensus disorder prediction 240 286 - -
Lsi02g01068 711 Gene3D Transferase(Phosphotransferase) domain 1 481 705 - -
Lsi02g01068 711 Gene3D Ribonuclease Inhibitor 25 253 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01068 - - - csv:101216091 1265.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01068 Lsi-Chr2:11694089 Lsi07g00634 Lsi-Chr7:6790676 0 dispersed
Lsi02g01068 Lsi-Chr2:11694089 Lsi02g02850 Lsi-Chr2:34678825 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g01525 . 34 784 Strubbelig Receptor Gene Family AT4G03390 62.1 1.9e-204 709.5
Lsi01g00341 . 17 751 Strubbelig Receptor Gene Family AT4G03390 54.1 4.2e-164 575.5
Lsi03g01722 . 9 735 Strubbelig Receptor Gene Family AT5G06820 53.5 5.7e-187 651.4
Lsi02g01068 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.7 3.5e-85 313.2
Lsi02g02850 . 425 740 Strubbelig Receptor Gene Family AT1G11130 50.3 1.1e-80 298.1
Lsi03g01722 . 9 735 Strubbelig Receptor Gene Family AT5G06820 53.5 5.7e-187 651.4
Lsi11g01525 . 34 784 Strubbelig Receptor Gene Family AT4G03390 62.1 1.9e-204 709.5
Lsi01g00341 . 17 751 Strubbelig Receptor Gene Family AT4G03390 54.1 4.2e-164 575.5
Lsi07g00634 . 1 765 Strubbelig Receptor Gene Family AT1G53730 56.2 1.3e-204 709.9
Lsi02g02850 . 1 767 Strubbelig Receptor Gene Family AT1G53730 55.5 1.3e-180 630.2
Lsi02g02850 . 6 757 Strubbelig Receptor Gene Family AT3G14350 51.2 3.9e-161 565.5
Lsi02g01068 . 149 711 Strubbelig Receptor Gene Family AT4G22130 63.8 8.8e-180 627.1
Lsi02g02850 . 419 759 Strubbelig Receptor Gene Family AT4G22130 60.1 4.2e-113 405.6
Lsi07g00634 . 404 781 Strubbelig Receptor Gene Family AT4G22130 54.5 1.5e-110 397.1
Lsi11g01525 . 481 776 Strubbelig Receptor Gene Family AT4G22130 61.6 2.0e-107 386.7
Lsi01g00341 . 464 751 Strubbelig Receptor Gene Family AT4G22130 60.5 2.2e-98 356.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004508 2 2 2 1 0 0 2 0 0 1 1 0 2 1 0 2 0 0 2 0 1 0 0 0 0 1 1 1 0 0 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83395 PF00069 Pkinase 3.60E-44 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g01068 Lsi_Chr02 FPKM 0.0 0.434338 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0