Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01068 ATGGCTCTTTGGGACTTCCTTTTGCTGTTTTTCTTCTTGATCTCTGGTTATATTCCATTTATTCGTGCTCTTACTGATGCTTCTGATGTTCAAGCTTTGCAAGTTATATACACCTCATTGAACAGTCCTCCTCAGCTGACTGGTTGGATTGGTAATGGAGGCGATCCATGTGTAGAGTCATGGAAAGGGGTGACTTGTGAAGGATCTGCTGTTGTTTCCATTGAGATTTCTGGGTTAGGGCTGAATGGAACGATGGGTTATGCGCTCTCAAGTTTTTTGTCACTGAAAAAGCTTGATATGAGCGACAACAATATTCATGACACGATTCCTTACCAATTGCCGCCGAACCTCACTAGCCTAAATATGGCAAAAAACAGCTTAAGTGGTAATCTTCCTTATTCCTTATCCACCATGGCTTCTCTCAATTATTTGAATATGAGCCACAATTTGCTATCTCAGGTGATAGGAGACGTTTTCACCAATCTTACTACCCTGGGGACCTTGGACCTTTCTTTCAACAACTTTACTGGGGATCTTCCCAAGTCCTTGGGAACTTTATCCAATGTTTCTTCCCTCTTTTTGCAGAACAACCAATTGACTGGCTCTCTCAATATTCTTATTGATTTGCCTCTGACCACTCTAAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGGTTGAAAATTTCATGTATGATGGAAATTCATTTGACAATAGTCCTGCACCTCCTCCACCGCCTTTTACTCCACCACCTCCTGGTAGATCTCGTAGCAGCCCCAAACATCCTGGGTCTAGCGGTGGCACCCATACTGCACCAAGTTCTAATGGGAGCTCATCCCACTCGAACAAAGGCTTGCCAGTTTTGGCTATAGTGGGGATAATTTTGGGTGCTATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCTGTCTGCATCCAGAAGAGAAAACGGAAGAATATTGGTCTAAGAGCTTCCAGTGGAAGGCTGTCCATTGCCACTAGTGTGAATGCTGAGGTGCAAGAGCATCGGGTAAAAAGTGTTGCTGCTGTTGCCGATATTAAGCCTCTTCCTGCTGAGAAAATGAATCCTGAGAGATTGCAGGCGAAAAATGGATCAGTGAAAAGAATAAAGTCCCCTATTACTGCTACTTCTTACACCGTTGCTTCTCTTCAAAGTGCAACAAATAGTTTTAGCCAAGAATGCATAGTTGGTGAAGGTTCTCTTGGCCGTGTTTACAAAGCCGACTTTCCTAACGGGAAGATAATGGCGGTTAAGAAAATCGATAATGCAGCGTTGTCACTACAGGAAGAAGACAATTTTCTTGAAGCGGTTTCAAACATGTCAAGATTGAGGCATACAAACATTGTCACACTAAATGGTTATTGTGCAGAACATGGTCAGCGTCTTCTAGTTTACGAGTTCATTGGAAATGGAAGTTTACATGACATGCTCCATTTTGCTGAAGAAAGTAGTAAGACACTGACTTGGAACGCACGTGTCCGGGTAGCACTTGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTTTGCTTGCCTTCTGTTGTACATAGAAACTTGAAGACTGCAAACATATTACTTGATGAAGATCTCAACCCCCATTTGTCAGATTGTGGTTTGGCTGCTTTAACACCCAACACAGAGCGGCAGATTTCTACTCAGATGGTTGGTTCTTTTGGCTATAGTGCTCCGGAATTTGCCTTGTCGGGAATATACACCGTCAAAAGTGACGTGTACAGCTTTGGAGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCGCTTGACAGTTCCAGGGTGAGATCAGAGCAGTCACTTGTGAGATGGGCTACTCCCCAACTTCATGATATCGACGCCTTAGCAAAAATGGTAGATCCTACTCTAAATGGAATGTACCCTGCAAAATCTCTGTCGCGCTTTGCCGACATCATTGCTCTCTGTGTTCAGCCTGAGCCCGAATTTCGACCTCCCATGTCCGAAGTAGTACAAGCATTGGTGCGTTTAGTGCAAAGAGCGAGTGTGGTAAAAAGGCATTCGAGCGACGAGACGGGTTTCAGTTACAAAACGCCCGAGCACGATGCAGTTGAGTTGCCATTTTGA 2136 43.82 MALWDFLLLFFFLISGYIPFIRALTDASDVQALQVIYTSLNSPPQLTGWIGNGGDPCVESWKGVTCEGSAVVSIEISGLGLNGTMGYALSSFLSLKKLDMSDNNIHDTIPYQLPPNLTSLNMAKNSLSGNLPYSLSTMASLNYLNMSHNLLSQVIGDVFTNLTTLGTLDLSFNNFTGDLPKSLGTLSNVSSLFLQNNQLTGSLNILIDLPLTTLNVANNNFSGWIPQELKSVENFMYDGNSFDNSPAPPPPPFTPPPPGRSRSSPKHPGSSGGTHTAPSSNGSSSHSNKGLPVLAIVGIILGAIIFVLIVLVAFAVCIQKRKRKNIGLRASSGRLSIATSVNAEVQEHRVKSVAAVADIKPLPAEKMNPERLQAKNGSVKRIKSPITATSYTVASLQSATNSFSQECIVGEGSLGRVYKADFPNGKIMAVKKIDNAALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFIGNGSLHDMLHFAEESSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEDLNPHLSDCGLAALTPNTERQISTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDETGFSYKTPEHDAVELPF 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11694089 11699986 + Lsi02G010680.1 Lsi02g01068 655810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01068 711 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Lsi02g01068 711 SUPERFAMILY Protein kinase-like (PK-like) 383 677 IPR011009 -
Lsi02g01068 711 MobiDBLite consensus disorder prediction 264 286 - -
Lsi02g01068 711 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 8-LIKE ISOFORM X1 14 702 - -
Lsi02g01068 711 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 702 - -
Lsi02g01068 711 Gene3D Phosphorylase Kinase; domain 1 364 480 - -
Lsi02g01068 711 SUPERFAMILY L domain-like 25 232 - -
Lsi02g01068 711 Pfam Protein kinase domain 405 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01068 711 CDD STKc_IRAK 409 680 - -
Lsi02g01068 711 ProSiteProfiles Protein kinase domain profile. 403 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01068 711 MobiDBLite consensus disorder prediction 244 263 - -
Lsi02g01068 711 MobiDBLite consensus disorder prediction 240 286 - -
Lsi02g01068 711 Gene3D Transferase(Phosphotransferase) domain 1 481 705 - -
Lsi02g01068 711 Gene3D Ribonuclease Inhibitor 25 253 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01068 Lsi-Chr2:11694089 Lsi07g00634 Lsi-Chr7:6790676 0 dispersed
Lsi02g01068 Lsi-Chr2:11694089 Lsi02g02850 Lsi-Chr2:34678825 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83395 PF00069 Pkinase 3.60E-44 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01068 - - csv:101216091 1265.37