Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01071 ATGGAAGATGATGAGTTAAAAAACAACAAAGAAATTAAAATGGAGGATTCACACAATAAGCTTCTAGAAAAGAATATAAAGAGCTACACAAAACTCCATAGCTTCAAGCAAATCTTCAATGGGTTTGCAGTTCATACAACCCCATCACAAGCCTCAAAGCTTAGAGAAGTTGATGGAGTGAAATTGGTTGAGTTAGATAGAGGAGTGAGGAAAATGACCACTTATACCCCTGAGTTTCTAGGATTAGTGCCTTCCAATAATCATAAATATTACTATAATTATAGTATTATTGATGGTGGTGGGGAAGGCATTTTGATTGGGTTTGTGGACTCTGGGATTTACCCAACACACCCAAGTTTTAGTTTTTATAATTTTCATCATCATCAAGATCATCAAGATCAAGATCAAGAAGAGGAGTTGTTTTGTGGGGTTTGTGAAGAGGGTCCTTTTTTTTCAAAAGCTTCTTGCAATGGGAAGATAGTGAGTGCTAGGTTTTTCTCTGCTGGGGCTCAGGCTGTTGCAAAGCTTAACTCTTCTCTTGACTTTCTCTCCCCATTTGATGCTGAAGGCCATGGAAGCCATGTGGCATCCATAGCTGCTGGGAATGCAGGAGTTCCAGTTATTGTGAATGGTTTCTTCTATGGATTGGCCAGTGGGATTGCGCCACGTGCAAGGTTGTTAAAAGCAGTGATTGATGGAGTTGATATATTGGCATTATCAATTGGACCAAATGAACCACCAGAAGTAGGATTTACCTTCCTAAGCATATATGATATTGCCATATTATCTGCTACAAGAGCTGGAATCCTTGTTGTTCAAGCAGCTGGAAATAACGGCCCGACCCGGGCAACCGTCGTCTCTTATAGCCCTTGGGCCATCGGTGTTGCAGCCTCTGGCACTGATAGAGTTTATTCGCCCTCACTACTCCTTGGCAATGGCCAAAAACTGGTATTGGCTAAGGATGCAAAGAAGCAAAATGAAACACATTACAACATACCAAATTACAGTGAAGAGTGCCAAAATCCTGAAGCTTTTGACCCAAATATTGTTCAAAACAGCATAGTCCTCTGCTCTTTCTCACAAGGATTCCTCAATGGAACCTCTTCTCTTACAGCCATCATTCACACTGCAACAACACTCAGATTCATGGGTTTTGTTCTCATTGCAAATCCAAACTATGGTGATTTCATTGCAGAGCCCATCCCTTTCAGAGTTCCCGGCATTCTCGTCCCGAGCGTATCGGATACTCGGAATGGAAGGGGAATGGTTAGTGAATTTAAAGGAAAAGCAGGCATTGGAGAAGGAAGAGTTGCTTCATTTGGAAGTCGAGCTCCCACAGTTAGCAGATTTTCATCAAGAGGACCAGATTACATTAACATAAATAGAACTGTAGCTGATGTATTAAAGCCAGATATTCTTGCACCAGGTCACCAAATTTGGGCTGCTTGGAGCCCCCTCAGTGCCTCAGAGCCACTTTTAAAGGGATACCATTTTGCACTGTTGTCTGGAACAAGTATGGCAGCTCCTCATATTGTGGGAATAGCAGCACTTATCAAGCAAAAATATCCTTCTTGGACTCCTTCCATGATAGCTTCTGCAATGTCCACAACTGCTACAAAGTATGATATGAATGGAGACCTTATTCAGGCAGAGGGATTCAACCTTCATAGTTTATATCCTTCTACTCCCTTCGATTTCGGTGCTGGCCTTGTTTCTCCGACCAATGCTTTGGACCCCGGACTCGTCTTCCCATCAGAATATGAAGACTATATAAACTTCTTGTGCTCTTTACCTGGGGTTGATCCTACCGTCATCAAAAGTGCCACCGGAGGACGGTGCAATGCCTCTGTCTCACAGCCACACCCTGCAGATCTGAACCTTCCTTCAGTCACAATATCATCCCTGGTTGGTCATCAGGTGGTGCAAAGAAGAGTGAAGAATGTAGGAGGTAAAGTGGAGACATACGTGTGGTCAGTGATCCCGCCAAACGGGACAACGGTCAACATCGATCCACCATGGTTCACAGTAGCGCCCAAAGAAGCCCAAAACTTGGAAATACAGATCAATGTCACACGCAAAATGGATCATTTTACCTTTGGGGAGATTATTTTGACAGGAAGTTTGAACCATATTGCAAGGATCCCTTTGTCAGTTTTGGCTGTTTCTGCATCCTGA 2175 43.08 MEDDELKNNKEIKMEDSHNKLLEKNIKSYTKLHSFKQIFNGFAVHTTPSQASKLREVDGVKLVELDRGVRKMTTYTPEFLGLVPSNNHKYYYNYSIIDGGGEGILIGFVDSGIYPTHPSFSFYNFHHHQDHQDQDQEEELFCGVCEEGPFFSKASCNGKIVSARFFSAGAQAVAKLNSSLDFLSPFDAEGHGSHVASIAAGNAGVPVIVNGFFYGLASGIAPRARLLKAVIDGVDILALSIGPNEPPEVGFTFLSIYDIAILSATRAGILVVQAAGNNGPTRATVVSYSPWAIGVAASGTDRVYSPSLLLGNGQKLVLAKDAKKQNETHYNIPNYSEECQNPEAFDPNIVQNSIVLCSFSQGFLNGTSSLTAIIHTATTLRFMGFVLIANPNYGDFIAEPIPFRVPGILVPSVSDTRNGRGMVSEFKGKAGIGEGRVASFGSRAPTVSRFSSRGPDYININRTVADVLKPDILAPGHQIWAAWSPLSASEPLLKGYHFALLSGTSMAAPHIVGIAALIKQKYPSWTPSMIASAMSTTATKYDMNGDLIQAEGFNLHSLYPSTPFDFGAGLVSPTNALDPGLVFPSEYEDYINFLCSLPGVDPTVIKSATGGRCNASVSQPHPADLNLPSVTISSLVGHQVVQRRVKNVGGKVETYVWSVIPPNGTTVNIDPPWFTVAPKEAQNLEIQINVTRKMDHFTFGEIILTGSLNHIARIPLSVLAVSAS 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11826376 11839982 - Lsi02G010710.1 Lsi02g01071 655813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01071 724 Pfam Fibronectin type-III domain 624 718 IPR041469 -
Lsi02g01071 724 Gene3D - 301 440 - -
Lsi02g01071 724 Gene3D - 594 721 - -
Lsi02g01071 724 ProSiteProfiles Serine proteases, subtilase domain profile. 77 577 - -
Lsi02g01071 724 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 11 719 IPR045051 -
Lsi02g01071 724 ProSitePatterns Serine proteases, subtilase family, serine active site. 503 513 IPR023828 -
Lsi02g01071 724 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 70 IPR037045 -
Lsi02g01071 724 PRINTS Subtilisin serine protease family (S8) signature 101 120 IPR015500 -
Lsi02g01071 724 PRINTS Subtilisin serine protease family (S8) signature 502 518 IPR015500 -
Lsi02g01071 724 PRINTS Subtilisin serine protease family (S8) signature 187 200 IPR015500 -
Lsi02g01071 724 Pfam Subtilase family 101 542 IPR000209 GO:0006508|GO:0008236
Lsi02g01071 724 Gene3D Peptidase S8/S53 domain 103 590 IPR036852 GO:0004252|GO:0006508
Lsi02g01071 724 PANTHER SUBTILISIN-LIKE PROTEASE SBT2.6 11 719 - -
Lsi02g01071 724 ProSitePatterns Serine proteases, subtilase family, histidine active site. 191 201 IPR022398 -
Lsi02g01071 724 SUPERFAMILY Subtilisin-like 54 582 IPR036852 GO:0004252|GO:0006508
Lsi02g01071 724 Pfam Peptidase inhibitor I9 11 70 IPR010259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01071 Lsi-Chr2:11826376 Lsi11g00788 Lsi-Chr11:9148837 1.56E-172 dispersed
Lsi02g01071 Lsi-Chr2:11826376 Lsi10g00488 Lsi-Chr10:7018143 1.22E-79 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01071 - - csv:101204623 1184.86