Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01097 ATGACGAGAAAGAAGGTTAAACTTGCATACATCACAAATGATGCAGCAAGAAAAGCCACATTCAAGAAAAGAAAAAAAGGGTTACTGAAGAAGCTCACCGAGCTCACCACTCTGTGCGGGATTGAGGCATGCGCCATAATCTTTAGCCCCTTCACTTCCCAACCTGACATCTGGCCCTCCTCTCCGGGGCTCCAAAGGGTTCTCTCCAAGTTCAAAAGCCTGCCAGAGATGGAGCAGTGCAAGAAGATGATGAACCAAGAGACGTTCCTTCGCGACCGAATCGCGAAGGCTGCCGACCAGCTCAAGAAGCTGCAAAGGGAGAATCACGAGAAAGAAATTGGCCGACTCATGTTTGAAAGCCTTGTAGCTGGAGCAGCGCCACCACCCAATCTTAGTGTCATTGATTTGAATGACCTTGGTTGGTTGGTTGATAAAAAAGTGGCTGATATTAACAAAAGGATGGAGTTGCTTATGGTGAACAATTCGTCGTGTTTGGCGACGGTGGAGCTGTCGTGGTTCAGGGAGATGGTGAGTCAAGGAGTTGATGAGAATCAATTGGGATTCAATATTGGGGATGATGTGATTCAACTTCCTAGTTTTGGAGAGGATGATAACCATAGTGCTTTTTGGTCAAATGATACCCTTTTCCCATGA 654 46.48 MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFTSQPDIWPSSPGLQRVLSKFKSLPEMEQCKKMMNQETFLRDRIAKAADQLKKLQRENHEKEIGRLMFESLVAGAAPPPNLSVIDLNDLGWLVDKKVADINKRMELLMVNNSSCLATVELSWFREMVSQGVDENQLGFNIGDDVIQLPSFGEDDNHSAFWSNDTLFP 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12461068 12461721 - Lsi02G010970.1 Lsi02g01097 655839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01097 217 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lsi02g01097 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Lsi02g01097 217 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lsi02g01097 217 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lsi02g01097 217 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lsi02g01097 217 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lsi02g01097 217 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lsi02g01097 217 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Lsi02g01097 217 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 160 - -
Lsi02g01097 217 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lsi02g01097 217 Coils Coil 87 114 - -
Lsi02g01097 217 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01097 Lsi-Chr2:12461068 Lsi06g00024 Lsi-Chr6:234115 1.53E-77 dispersed
Lsi02g01097 Lsi-Chr2:12461068 Lsi04g00407 Lsi-Chr4:3977010 3.62E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24808 PF00319 SRF-TF 4.60E-17 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01097 - - csv:101219796 327.02