Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01097 ATGACGAGAAAGAAGGTTAAACTTGCATACATCACAAATGATGCAGCAAGAAAAGCCACATTCAAGAAAAGAAAAAAAGGGTTACTGAAGAAGCTCACCGAGCTCACCACTCTGTGCGGGATTGAGGCATGCGCCATAATCTTTAGCCCCTTCACTTCCCAACCTGACATCTGGCCCTCCTCTCCGGGGCTCCAAAGGGTTCTCTCCAAGTTCAAAAGCCTGCCAGAGATGGAGCAGTGCAAGAAGATGATGAACCAAGAGACGTTCCTTCGCGACCGAATCGCGAAGGCTGCCGACCAGCTCAAGAAGCTGCAAAGGGAGAATCACGAGAAAGAAATTGGCCGACTCATGTTTGAAAGCCTTGTAGCTGGAGCAGCGCCACCACCCAATCTTAGTGTCATTGATTTGAATGACCTTGGTTGGTTGGTTGATAAAAAAGTGGCTGATATTAACAAAAGGATGGAGTTGCTTATGGTGAACAATTCGTCGTGTTTGGCGACGGTGGAGCTGTCGTGGTTCAGGGAGATGGTGAGTCAAGGAGTTGATGAGAATCAATTGGGATTCAATATTGGGGATGATGTGATTCAACTTCCTAGTTTTGGAGAGGATGATAACCATAGTGCTTTTTGGTCAAATGATACCCTTTTCCCATGA 654 46.48 MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFTSQPDIWPSSPGLQRVLSKFKSLPEMEQCKKMMNQETFLRDRIAKAADQLKKLQRENHEKEIGRLMFESLVAGAAPPPNLSVIDLNDLGWLVDKKVADINKRMELLMVNNSSCLATVELSWFREMVSQGVDENQLGFNIGDDVIQLPSFGEDDNHSAFWSNDTLFP 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12461068 12461721 - Lsi02G010970.1 Lsi02g01097 655839

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01097 217 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lsi02g01097 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Lsi02g01097 217 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lsi02g01097 217 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lsi02g01097 217 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lsi02g01097 217 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lsi02g01097 217 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lsi02g01097 217 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Lsi02g01097 217 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 160 - -
Lsi02g01097 217 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lsi02g01097 217 Coils Coil 87 114 - -
Lsi02g01097 217 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 160 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01097 - - - csv:101219796 327.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01097 Lsi-Chr2:12461068 Lsi06g00024 Lsi-Chr6:234115 1.53E-77 dispersed
Lsi02g01097 Lsi-Chr2:12461068 Lsi04g00407 Lsi-Chr4:3977010 3.62E-11 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g01001 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 2.7e-50 196.1
Lsi06g00024 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 1.9e-54 209.9
Lsi02g01097 . 1 157 Type I MADS-box Gene Family AT5G48670 55.4 4.3e-46 182.2
Lsi03g01001 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 2.7e-50 196.1
Lsi06g00024 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 1.9e-54 209.9
Lsi02g01097 . 1 157 Type I MADS-box Gene Family AT5G48670 55.4 4.3e-46 182.2
Lsi03g01001 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 2.7e-50 196.1
Lsi06g00024 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 1.9e-54 209.9
Lsi02g01097 . 1 157 Type I MADS-box Gene Family AT5G48670 55.4 4.3e-46 182.2
Lsi03g01001 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 2.7e-50 196.1
Lsi06g00024 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 1.9e-54 209.9
Lsi02g01097 . 1 157 Type I MADS-box Gene Family AT5G48670 55.4 4.3e-46 182.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24808 PF00319 SRF-TF 4.60E-17 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g01097 Lsi_Chr02 FPKM 24.396826 25.221203 30.777792 35.148716 16.776579 12.820208 15.993328 26.005234 25.237535 28.843992