Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g01157 | ATGGACTCTGGTGATGTTGAGCAATCCTTGCTTCCTAAGCCGTCCGATTCTGATAAGATGAATTCTCTCCTGAGAAGAAAATCTAACCGTCATGGTAGTTTCTCACATTCAGTAGAAAATAATAATCAACCACAAAATTATGATGCAGTGTCTCATCAACGTATTGCTGTTTCACACGTTAGTTTTAGGAAAGTATTTGTTCTTCTGGCAACTTATTTGGGAGGAGGCACGTTTTGTTTTTTCCTTGTTCGGGATCAGATCACTGGCAAGAAAACAAATGGGATTGTTGATGCCATTTACTTTTGTGTTGTGACAATGACCACCGTTGGGTATGGTGATCTTGTTCCTAATAGCACAGTTGCGAAACTACTTGCATGTGCTTATGTCTTCACTGGAATGACTCTTGGTGGGATGATTCTTAGCAAGGCAGCCGATTACATTGTGGAAAAGCAGGAAATTCTTCTGGTTAAGGCCATGTACATGAGGAAAAAGATCAGCTCCAGTGAGATCCTTCAGGAATCTGAGGCTCACAAATTGAAATACAAATTCATTATGACTGGAATCCTCCTTTGGGCTCTTGTCGTTGTTGGAACTCTTTTCTTGACTGTGGTTGAGAAGCTAGAGTTCACAGATGCCTTTTATTGCGTTTGTTCCACAATCACGACTCTTGGCTATGGAGATGAGAGTTTCTCTACAACAGCTGGTCGTGTTTTTGCTGTCATTTGGATAATGAGCAGTACCATCTGCCTAGCACAGTTCTTTCTGTACCTTGCAGAATTACACACAGAAAGAAGACAGGAATCACTGGTAAATTGGGTTCTCAGCCGAAGCCTCACGTACTCGGATCTTGAAGAAGCAGACCTTGATCATGATAAAGTAGTAAGTGCTGCAGAATTTGTTATATATAAACTGAAGGAAATGGGGAAGATCAATCAGGAAGACGTTTCTCCCATTCTCGACACTTTTAAGAAGCTTGACATTGATCAATCAGGATGTTTAACAGAAGCTGATATAGTAACCTCATCGTCGTTGGCTTAA | 1038 | 40.94 | MDSGDVEQSLLPKPSDSDKMNSLLRRKSNRHGSFSHSVENNNQPQNYDAVSHQRIAVSHVSFRKVFVLLATYLGGGTFCFFLVRDQITGKKTNGIVDAIYFCVVTMTTVGYGDLVPNSTVAKLLACAYVFTGMTLGGMILSKAADYIVEKQEILLVKAMYMRKKISSSEILQESEAHKLKYKFIMTGILLWALVVVGTLFLTVVEKLEFTDAFYCVCSTITTLGYGDESFSTTAGRVFAVIWIMSSTICLAQFFLYLAELHTERRQESLVNWVLSRSLTYSDLEEADLDHDKVVSAAEFVIYKLKEMGKINQEDVSPILDTFKKLDIDQSGCLTEADIVTSSSLA | 345 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 13941721 | 13950510 | - | Lsi02G011580.1 | Lsi02g01157 | 655899 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g01157 | 345 | Gene3D | - | 157 | 273 | - | - | |
Lsi02g01157 | 345 | SUPERFAMILY | Voltage-gated potassium channels | 58 | 162 | - | - | |
Lsi02g01157 | 345 | Gene3D | - | 282 | 343 | - | - | |
Lsi02g01157 | 345 | ProSitePatterns | EF-hand calcium-binding domain. | 326 | 338 | IPR018247 | - | |
Lsi02g01157 | 345 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Lsi02g01157 | 345 | SUPERFAMILY | EF-hand | 272 | 339 | IPR011992 | - | |
Lsi02g01157 | 345 | SUPERFAMILY | Voltage-gated potassium channels | 178 | 276 | - | - | |
Lsi02g01157 | 345 | Pfam | Ion channel | 69 | 148 | IPR013099 | - | |
Lsi02g01157 | 345 | Pfam | Ion channel | 190 | 259 | IPR013099 | - | |
Lsi02g01157 | 345 | PANTHER | POTASSIUM CHANNEL, SUBFAMILY K | 20 | 339 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 | |
Lsi02g01157 | 345 | PANTHER | OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN | 20 | 339 | - | - | |
Lsi02g01157 | 345 | Gene3D | - | 56 | 153 | - | - | |
Lsi02g01157 | 345 | PRINTS | Two pore domain K+ channel signature | 221 | 230 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 | |
Lsi02g01157 | 345 | PRINTS | Two pore domain K+ channel signature | 104 | 132 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01157 | Lsi-Chr2:13941721 | Lsi02g01840 | Lsi-Chr2:24163922 | 6.34E-128 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g01157 | K05389 | - | csv:101214791 | 626.32 |