Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01157 ATGGACTCTGGTGATGTTGAGCAATCCTTGCTTCCTAAGCCGTCCGATTCTGATAAGATGAATTCTCTCCTGAGAAGAAAATCTAACCGTCATGGTAGTTTCTCACATTCAGTAGAAAATAATAATCAACCACAAAATTATGATGCAGTGTCTCATCAACGTATTGCTGTTTCACACGTTAGTTTTAGGAAAGTATTTGTTCTTCTGGCAACTTATTTGGGAGGAGGCACGTTTTGTTTTTTCCTTGTTCGGGATCAGATCACTGGCAAGAAAACAAATGGGATTGTTGATGCCATTTACTTTTGTGTTGTGACAATGACCACCGTTGGGTATGGTGATCTTGTTCCTAATAGCACAGTTGCGAAACTACTTGCATGTGCTTATGTCTTCACTGGAATGACTCTTGGTGGGATGATTCTTAGCAAGGCAGCCGATTACATTGTGGAAAAGCAGGAAATTCTTCTGGTTAAGGCCATGTACATGAGGAAAAAGATCAGCTCCAGTGAGATCCTTCAGGAATCTGAGGCTCACAAATTGAAATACAAATTCATTATGACTGGAATCCTCCTTTGGGCTCTTGTCGTTGTTGGAACTCTTTTCTTGACTGTGGTTGAGAAGCTAGAGTTCACAGATGCCTTTTATTGCGTTTGTTCCACAATCACGACTCTTGGCTATGGAGATGAGAGTTTCTCTACAACAGCTGGTCGTGTTTTTGCTGTCATTTGGATAATGAGCAGTACCATCTGCCTAGCACAGTTCTTTCTGTACCTTGCAGAATTACACACAGAAAGAAGACAGGAATCACTGGTAAATTGGGTTCTCAGCCGAAGCCTCACGTACTCGGATCTTGAAGAAGCAGACCTTGATCATGATAAAGTAGTAAGTGCTGCAGAATTTGTTATATATAAACTGAAGGAAATGGGGAAGATCAATCAGGAAGACGTTTCTCCCATTCTCGACACTTTTAAGAAGCTTGACATTGATCAATCAGGATGTTTAACAGAAGCTGATATAGTAACCTCATCGTCGTTGGCTTAA 1038 40.94 MDSGDVEQSLLPKPSDSDKMNSLLRRKSNRHGSFSHSVENNNQPQNYDAVSHQRIAVSHVSFRKVFVLLATYLGGGTFCFFLVRDQITGKKTNGIVDAIYFCVVTMTTVGYGDLVPNSTVAKLLACAYVFTGMTLGGMILSKAADYIVEKQEILLVKAMYMRKKISSSEILQESEAHKLKYKFIMTGILLWALVVVGTLFLTVVEKLEFTDAFYCVCSTITTLGYGDESFSTTAGRVFAVIWIMSSTICLAQFFLYLAELHTERRQESLVNWVLSRSLTYSDLEEADLDHDKVVSAAEFVIYKLKEMGKINQEDVSPILDTFKKLDIDQSGCLTEADIVTSSSLA 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13941721 13950510 - Lsi02G011580.1 Lsi02g01157 655899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01157 345 Gene3D - 157 273 - -
Lsi02g01157 345 SUPERFAMILY Voltage-gated potassium channels 58 162 - -
Lsi02g01157 345 Gene3D - 282 343 - -
Lsi02g01157 345 ProSitePatterns EF-hand calcium-binding domain. 326 338 IPR018247 -
Lsi02g01157 345 MobiDBLite consensus disorder prediction 1 21 - -
Lsi02g01157 345 SUPERFAMILY EF-hand 272 339 IPR011992 -
Lsi02g01157 345 SUPERFAMILY Voltage-gated potassium channels 178 276 - -
Lsi02g01157 345 Pfam Ion channel 69 148 IPR013099 -
Lsi02g01157 345 Pfam Ion channel 190 259 IPR013099 -
Lsi02g01157 345 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 20 339 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lsi02g01157 345 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 20 339 - -
Lsi02g01157 345 Gene3D - 56 153 - -
Lsi02g01157 345 PRINTS Two pore domain K+ channel signature 221 230 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lsi02g01157 345 PRINTS Two pore domain K+ channel signature 104 132 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01157 Lsi-Chr2:13941721 Lsi02g01840 Lsi-Chr2:24163922 6.34E-128 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01157 K05389 - csv:101214791 626.32