Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g01169 | ATGGCCTCAAAGACGAGTTCGAAGCCTTCTGTAAAGCAACCTAAGGGGATAATCGGCGTTCAAGCGACCGATGCAAGTGGTCTAAAGTCCTTACCTTCAAAGACTTCATTGGGAAGCAAAATTGGTTCTGTTATCTCAGGAGATGTATTGAACTCCACACAGAAATCCTTGAATCAGTCTACTTTGATTGATTCATCAAATAGCAAATCCTCAAGTTTAAATCCTAAAGAATCTACTGAGTCTTGTAATCAGAAAGTCAAAGAAAATTGCTCAAAGTCTGGCGCTAAGACATTGACAGAAGGAGATCCTGCTCTTAGCGGGACTCGGCTCTCTATAGATCCTGAGAAGAAAATATCGGAATGTGGGAGTGGGAAGGATAGTTCTGTTTCTGCCAAAGTCAGTGATGGAACAAACAGTGTTGCCAAGACCAGTGGAAGTGCTAAAATTAGCGACCGTGTTGAGATGGTTGAGAGTGGCAAGAGCAGCATGTGTCGAGGAAGCACAAGCAGCGACATCAGTGACGAAAGCACCTGTAGCAGCTTTAGTAGTAGTATCAGTAAGCCTCACAAAGCAAATGACTTGAGATGGGAGGCCATCCAAGCTGTACGTGCAAGGGATGGGTTATTGGGATTAGCTCATTTTAGACTATTGAAGAGACTGGGATGTGGGGATATCGGAAGCGTCTACCTGTCGGAGTTGAGTGGTACTAAATGTTATTTTGCTATGAAGGTCATGGACAAAGGGTCTCTAGCAAGTCGAAAGAAGTTGCTTCGAGCTCAGACCGAAAGAGAAATATTGCAATCTCTTGATCATCCATTCCTTCCTACATTATATACTCATTTTGAAACTGATAAGTTCTCATGCTTGGTGATGGAGTTCTGCCCTGGGGGAGACTTGCACACTCTAAGGCAGAGGCAGCCAGGGAAGCATTTTCCCGAGCAGGCGGTGAAATTTTATGTAGCAGAGGTTCTCCTAGCACTTGAGTATCTTCACATGCTTGGGATCGTATACCGGGACCTTAAGCCTGAGAATGTTCTTGTGAGAGAAGATGGACACATAATGCTTTCAGATTTTGATCTTTCACTAAGATGTGCAGTTAGTCCAACATTAGTGAAGGGTTCATGTTCCGATTCTGAACCCTTGAGAAAGAATTCGGCTTATTGTGTTCAACCGGCTTGTATCGAACCTTCCTGCATCCAGCCATCCTGTGTGGTTCCCACGACATGCTTCTCTCCCCGACTTTTCTCTAGCAAATCAAAGAAGGATAGAAAACCCAAGACTGAAATAGGAAACCAGGTAACACCATTGCCAGAGCTCATTGCAGAGCCTACGGAGGCGAGATCAATGTCATTTGTTGGTACACATGAGTACTTGGCACCTGAGATCATTAAAGGTGAAGGTCATGGAAGTGCTGTTGACTGGTGGACTTTTGGAATCTTTCTATACGAACTGTTGTTTGGTAAAACTCCTTTTAAGGGATCTGGGAATCGAGCCACGTTGTTCAACGTTGTTGGTCAGCCTTTGCGGTTTCCTGAATCACCAGTTGTCAGTTTTGCTGCAAGGGATCTCATCAGGGGATTGCTTGTCAAGGAACCACAGCATAGATTAGCTTACAAACGAGGGGCAACTGAGATCAAGCAACATCCCTTCTTTGAAGGTGTCAACTGGGCATTGATACGTTGCGCTTCGCCACCAGAAGTACCAAAGCCTGTAGAGATTGAGAGGATACCCTCACCAGCACCCCCAGTCAGTGGAAAAGCTGTAATGGCTAGACCTGGTCCTGATTCCAAATCATCTGATAATTATCTCGAGTTTGATTTCTTTTAG | 1827 | 44.72 | MASKTSSKPSVKQPKGIIGVQATDASGLKSLPSKTSLGSKIGSVISGDVLNSTQKSLNQSTLIDSSNSKSSSLNPKESTESCNQKVKENCSKSGAKTLTEGDPALSGTRLSIDPEKKISECGSGKDSSVSAKVSDGTNSVAKTSGSAKISDRVEMVESGKSSMCRGSTSSDISDESTCSSFSSSISKPHKANDLRWEAIQAVRARDGLLGLAHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKGSCSDSEPLRKNSAYCVQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKDRKPKTEIGNQVTPLPELIAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIERIPSPAPPVSGKAVMARPGPDSKSSDNYLEFDFF | 608 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 14326633 | 14331209 | - | Lsi02G011690.1 | Lsi02g01169 | 655911 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g01169 | 608 | MobiDBLite | consensus disorder prediction | 123 | 146 | - | - | |
Lsi02g01169 | 608 | SMART | serkin_6 | 214 | 551 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi02g01169 | 608 | MobiDBLite | consensus disorder prediction | 26 | 40 | - | - | |
Lsi02g01169 | 608 | ProSiteProfiles | Protein kinase domain profile. | 214 | 551 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi02g01169 | 608 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
Lsi02g01169 | 608 | CDD | STKc_phototropin_like | 213 | 574 | - | - | |
Lsi02g01169 | 608 | MobiDBLite | consensus disorder prediction | 575 | 600 | - | - | |
Lsi02g01169 | 608 | PANTHER | FLIPPASE KINASE 1-RELATED | 3 | 608 | - | - | |
Lsi02g01169 | 608 | Gene3D | Transferase(Phosphotransferase) domain 1 | 445 | 569 | - | - | |
Lsi02g01169 | 608 | SUPERFAMILY | Protein kinase-like (PK-like) | 191 | 579 | IPR011009 | - | |
Lsi02g01169 | 608 | MobiDBLite | consensus disorder prediction | 57 | 146 | - | - | |
Lsi02g01169 | 608 | PANTHER | SERINE/THREONINE KINASE FAMILY PROTEIN | 3 | 608 | - | - | |
Lsi02g01169 | 608 | Gene3D | Phosphorylase Kinase; domain 1 | 212 | 297 | - | - | |
Lsi02g01169 | 608 | Pfam | Protein kinase domain | 448 | 551 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi02g01169 | 608 | Pfam | Protein kinase domain | 215 | 365 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi02g01169 | 608 | MobiDBLite | consensus disorder prediction | 57 | 96 | - | - | |
Lsi02g01169 | 608 | Gene3D | Transferase(Phosphotransferase) domain 1 | 298 | 366 | - | - | |
Lsi02g01169 | 608 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 335 | 347 | IPR008271 | GO:0004672|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01169 | Lsi-Chr2:14326633 | Lsi10g01180 | Lsi-Chr10:16085006 | 0 | dispersed | |
Lsi01g01942 | Lsi-Chr1:24956881 | Lsi02g01169 | Lsi-Chr2:14326633 | 0 | transposed | |
Lsi03g01351 | Lsi-Chr3:24384562 | Lsi02g01169 | Lsi-Chr2:14326633 | 0 | transposed | |
Lsi05g02229 | Lsi-Chr5:28852635 | Lsi02g01169 | Lsi-Chr2:14326633 | 0 | transposed | |
Lsi01g00506 | Lsi-Chr1:4134269 | Lsi02g01169 | Lsi-Chr2:14326633 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83396 | PF00069 | Pkinase | 9.40E-37 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g01169 | K08286 | - | csv:101213662 | 1082.4 |