Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01169 ATGGCCTCAAAGACGAGTTCGAAGCCTTCTGTAAAGCAACCTAAGGGGATAATCGGCGTTCAAGCGACCGATGCAAGTGGTCTAAAGTCCTTACCTTCAAAGACTTCATTGGGAAGCAAAATTGGTTCTGTTATCTCAGGAGATGTATTGAACTCCACACAGAAATCCTTGAATCAGTCTACTTTGATTGATTCATCAAATAGCAAATCCTCAAGTTTAAATCCTAAAGAATCTACTGAGTCTTGTAATCAGAAAGTCAAAGAAAATTGCTCAAAGTCTGGCGCTAAGACATTGACAGAAGGAGATCCTGCTCTTAGCGGGACTCGGCTCTCTATAGATCCTGAGAAGAAAATATCGGAATGTGGGAGTGGGAAGGATAGTTCTGTTTCTGCCAAAGTCAGTGATGGAACAAACAGTGTTGCCAAGACCAGTGGAAGTGCTAAAATTAGCGACCGTGTTGAGATGGTTGAGAGTGGCAAGAGCAGCATGTGTCGAGGAAGCACAAGCAGCGACATCAGTGACGAAAGCACCTGTAGCAGCTTTAGTAGTAGTATCAGTAAGCCTCACAAAGCAAATGACTTGAGATGGGAGGCCATCCAAGCTGTACGTGCAAGGGATGGGTTATTGGGATTAGCTCATTTTAGACTATTGAAGAGACTGGGATGTGGGGATATCGGAAGCGTCTACCTGTCGGAGTTGAGTGGTACTAAATGTTATTTTGCTATGAAGGTCATGGACAAAGGGTCTCTAGCAAGTCGAAAGAAGTTGCTTCGAGCTCAGACCGAAAGAGAAATATTGCAATCTCTTGATCATCCATTCCTTCCTACATTATATACTCATTTTGAAACTGATAAGTTCTCATGCTTGGTGATGGAGTTCTGCCCTGGGGGAGACTTGCACACTCTAAGGCAGAGGCAGCCAGGGAAGCATTTTCCCGAGCAGGCGGTGAAATTTTATGTAGCAGAGGTTCTCCTAGCACTTGAGTATCTTCACATGCTTGGGATCGTATACCGGGACCTTAAGCCTGAGAATGTTCTTGTGAGAGAAGATGGACACATAATGCTTTCAGATTTTGATCTTTCACTAAGATGTGCAGTTAGTCCAACATTAGTGAAGGGTTCATGTTCCGATTCTGAACCCTTGAGAAAGAATTCGGCTTATTGTGTTCAACCGGCTTGTATCGAACCTTCCTGCATCCAGCCATCCTGTGTGGTTCCCACGACATGCTTCTCTCCCCGACTTTTCTCTAGCAAATCAAAGAAGGATAGAAAACCCAAGACTGAAATAGGAAACCAGGTAACACCATTGCCAGAGCTCATTGCAGAGCCTACGGAGGCGAGATCAATGTCATTTGTTGGTACACATGAGTACTTGGCACCTGAGATCATTAAAGGTGAAGGTCATGGAAGTGCTGTTGACTGGTGGACTTTTGGAATCTTTCTATACGAACTGTTGTTTGGTAAAACTCCTTTTAAGGGATCTGGGAATCGAGCCACGTTGTTCAACGTTGTTGGTCAGCCTTTGCGGTTTCCTGAATCACCAGTTGTCAGTTTTGCTGCAAGGGATCTCATCAGGGGATTGCTTGTCAAGGAACCACAGCATAGATTAGCTTACAAACGAGGGGCAACTGAGATCAAGCAACATCCCTTCTTTGAAGGTGTCAACTGGGCATTGATACGTTGCGCTTCGCCACCAGAAGTACCAAAGCCTGTAGAGATTGAGAGGATACCCTCACCAGCACCCCCAGTCAGTGGAAAAGCTGTAATGGCTAGACCTGGTCCTGATTCCAAATCATCTGATAATTATCTCGAGTTTGATTTCTTTTAG 1827 44.72 MASKTSSKPSVKQPKGIIGVQATDASGLKSLPSKTSLGSKIGSVISGDVLNSTQKSLNQSTLIDSSNSKSSSLNPKESTESCNQKVKENCSKSGAKTLTEGDPALSGTRLSIDPEKKISECGSGKDSSVSAKVSDGTNSVAKTSGSAKISDRVEMVESGKSSMCRGSTSSDISDESTCSSFSSSISKPHKANDLRWEAIQAVRARDGLLGLAHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKGSCSDSEPLRKNSAYCVQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKDRKPKTEIGNQVTPLPELIAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIERIPSPAPPVSGKAVMARPGPDSKSSDNYLEFDFF 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14326633 14331209 - Lsi02G011690.1 Lsi02g01169 655911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01169 608 MobiDBLite consensus disorder prediction 123 146 - -
Lsi02g01169 608 SMART serkin_6 214 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01169 608 MobiDBLite consensus disorder prediction 26 40 - -
Lsi02g01169 608 ProSiteProfiles Protein kinase domain profile. 214 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01169 608 MobiDBLite consensus disorder prediction 1 40 - -
Lsi02g01169 608 CDD STKc_phototropin_like 213 574 - -
Lsi02g01169 608 MobiDBLite consensus disorder prediction 575 600 - -
Lsi02g01169 608 PANTHER FLIPPASE KINASE 1-RELATED 3 608 - -
Lsi02g01169 608 Gene3D Transferase(Phosphotransferase) domain 1 445 569 - -
Lsi02g01169 608 SUPERFAMILY Protein kinase-like (PK-like) 191 579 IPR011009 -
Lsi02g01169 608 MobiDBLite consensus disorder prediction 57 146 - -
Lsi02g01169 608 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 3 608 - -
Lsi02g01169 608 Gene3D Phosphorylase Kinase; domain 1 212 297 - -
Lsi02g01169 608 Pfam Protein kinase domain 448 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01169 608 Pfam Protein kinase domain 215 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01169 608 MobiDBLite consensus disorder prediction 57 96 - -
Lsi02g01169 608 Gene3D Transferase(Phosphotransferase) domain 1 298 366 - -
Lsi02g01169 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 335 347 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01169 Lsi-Chr2:14326633 Lsi10g01180 Lsi-Chr10:16085006 0 dispersed
Lsi01g01942 Lsi-Chr1:24956881 Lsi02g01169 Lsi-Chr2:14326633 0 transposed
Lsi03g01351 Lsi-Chr3:24384562 Lsi02g01169 Lsi-Chr2:14326633 0 transposed
Lsi05g02229 Lsi-Chr5:28852635 Lsi02g01169 Lsi-Chr2:14326633 0 transposed
Lsi01g00506 Lsi-Chr1:4134269 Lsi02g01169 Lsi-Chr2:14326633 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83396 PF00069 Pkinase 9.40E-37 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01169 K08286 - csv:101213662 1082.4