Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01177 ATGCAATTGGAGAAGAATGGGGTAATTCCTCCTTCTTCTCCTTGGCATAAGGCTAAATCTGGAAAAGATGTCATTATCGCCAATCTTGACACTGGTGTATGGCCGGAGTCCAAGAGTTTTGGAGAACATGGCATAGATGGGCCTATTCCATCAAAGTGGAAAGGAGGTTGCACTGATAAAACTAGCGATCGAGTGCCTTGTAACAGGAAATTAATCGGAGCAAAGTACTTCAACAAGGGCTTCATCGAATACTTGAAGCTTGAAAATTCTACCGACCTCTCATTTGTCATCAACTCCACTCGCGACTACGAAGGCCATGGCTCTCACACCCTGTCCACGGCTGGTGGTAGCTACGTGTCTGGCGCCAGTGTGTTAGGGTCGGGTGTCGGAACTGCCAAAGGTGGGTCTCCGAAGGCTCGCGTTGCCGCCTACAAGGTTTGCTGGCCACTTGAGGGTGGTGGGTGCTTCGATGCCGACATCGCCGAGGCATTCGACCATGCCATTGATGATGGTGTAGATGTTCTTTCACTCTCCCTTGGTGGTAATCAAGCCGATTACTTTGACGATTCCATTGCCATTTCTGCCTTCCATGCTGTGAAGAAGAGAATCCCTGTGGTGTGCTCTGCCGGCAACTCCGGTCCTGATGCTTGGACTGCTTCTAATACTGCACCTTGGATTTTGACGGTTGGTGCAAGTACTTTAGACCGTGAGTTTCAAGCTCCTGTTGAGCTTCAGAATGGCCATCGTTACATGGGTTCGAGCCTTTCAAAAGCATTGAAGGAAAAGAAGTTATATCCATTGATAACCGGAGCTCAGGCGAAAGCGAAGAACGCGACCGCAGACGAGGCCATCCTTTGCAAGCCACAAACATTGGATCATTCAAAAGTAAAAGGAAAAATATTGGCTTGCTTGAGAGGAGACAATGCAAGAGTGGACAAAGGAGAACAAGCTGCCCTTGCTGGTGCTGTTGGAATGATTCTATGCAATGATGAGCTTAGTGGATTTGAAACCATTGCCGATCCCCACGTTCTTCCAGCTTCCCATATCAATTACAATGACGGTCAAGCTGTTCTCTCTTACATCAATTCCACCAAAAATCCAATGGGGTATTTAATCCCACCGTCAGCTAAAGTTAACACCAAACCTGCTCCTACTATGGCGGCCTTTTCATCACGAGGACCCAACATTATTTCACCTGAGATTATCAAGCCGGATGTGACTGCACCAGGCGTGAACATAATCGCTGCATTCTCTGAAGCCGTTAGCCCAACAGGTGAACCATTCGACAACAGAACAGTTCCATTCATAACAATGTCAGGCACCTCTATGTCTTGCCCCCACGTCAGCGGCGTTGTTGGCCTCCTTCGAACTCTCCATCCTCATTGGAGCCCTTCCGCCATCAAGTCTGCCATCATGACCTCTGCTAGAATTCTCGATAACACAATGAATCCTATGCTTGACGGTGGCTCCCCTGACCTCACCCCTGCCACCCCCTTCGCCTACGGCTCTGGCCACATCCACCCCAAGGGAGCCATTGACCCCGGCCTCGTCTACGACCTCTCACCCAATGACTACTTGGAATTCCTCTGTGCTAGTGGCTACGACGAGAAGACCATTCGGGCATTCTCTGATGGCCCATTCAAGTGCCCTTCCTCTGCTTCTATTTTGAACTTCAATTACCCTTCCATTGGAGTTCCGAATTTAAATGGCAATGTCACCGTCATTAGGAAGTTGAAGAACGTTGGTACTCCTGGGGTTTATAGAGCCAGAATTCTCCACCCAGACGGAGTTAAAGTTTCGGTAAAGCCCAGAGTTTTGAAATTTGAGAAAGTTGCAGAGGAGAAGAGTTTTGAATTGACGATGTCTGGAGTTGTGCCAAAGAATCAAGTTGTTGACGGCGTGTTGATTTGGACGGATGGCAAACACTTTGTTAGAAGTCCAATTGTCGTTTCTTCTAGCTTGTTCTGA 1968 48.32 MQLEKNGVIPPSSPWHKAKSGKDVIIANLDTGVWPESKSFGEHGIDGPIPSKWKGGCTDKTSDRVPCNRKLIGAKYFNKGFIEYLKLENSTDLSFVINSTRDYEGHGSHTLSTAGGSYVSGASVLGSGVGTAKGGSPKARVAAYKVCWPLEGGGCFDADIAEAFDHAIDDGVDVLSLSLGGNQADYFDDSIAISAFHAVKKRIPVVCSAGNSGPDAWTASNTAPWILTVGASTLDREFQAPVELQNGHRYMGSSLSKALKEKKLYPLITGAQAKAKNATADEAILCKPQTLDHSKVKGKILACLRGDNARVDKGEQAALAGAVGMILCNDELSGFETIADPHVLPASHINYNDGQAVLSYINSTKNPMGYLIPPSAKVNTKPAPTMAAFSSRGPNIISPEIIKPDVTAPGVNIIAAFSEAVSPTGEPFDNRTVPFITMSGTSMSCPHVSGVVGLLRTLHPHWSPSAIKSAIMTSARILDNTMNPMLDGGSPDLTPATPFAYGSGHIHPKGAIDPGLVYDLSPNDYLEFLCASGYDEKTIRAFSDGPFKCPSSASILNFNYPSIGVPNLNGNVTVIRKLKNVGTPGVYRARILHPDGVKVSVKPRVLKFEKVAEEKSFELTMSGVVPKNQVVDGVLIWTDGKHFVRSPIVVSSSLF 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14568017 14571610 - Lsi02G011770.1 Lsi02g01177 655919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01177 655 Pfam Subtilase family 21 483 IPR000209 GO:0006508|GO:0008236
Lsi02g01177 655 CDD PA_subtilisin_like 242 371 - -
Lsi02g01177 655 ProSitePatterns Serine proteases, subtilase family, serine active site. 440 450 IPR023828 -
Lsi02g01177 655 Gene3D Peptidase S8/S53 domain 23 525 IPR036852 GO:0004252|GO:0006508
Lsi02g01177 655 SUPERFAMILY PA domain 293 364 IPR046450 -
Lsi02g01177 655 Pfam PA domain 279 356 IPR003137 -
Lsi02g01177 655 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 2 650 IPR045051 -
Lsi02g01177 655 CDD Peptidases_S8_3 11 475 IPR034197 -
Lsi02g01177 655 Gene3D - 235 379 - -
Lsi02g01177 655 PRINTS Subtilisin serine protease family (S8) signature 21 40 IPR015500 -
Lsi02g01177 655 PRINTS Subtilisin serine protease family (S8) signature 102 115 IPR015500 -
Lsi02g01177 655 PRINTS Subtilisin serine protease family (S8) signature 439 455 IPR015500 -
Lsi02g01177 655 Pfam Fibronectin type-III domain 557 650 IPR041469 -
Lsi02g01177 655 PANTHER SUBTILISIN-LIKE PROTEASE 2 650 - -
Lsi02g01177 655 ProSiteProfiles Serine proteases, subtilase domain profile. 1 512 - -
Lsi02g01177 655 Gene3D - 529 653 - -
Lsi02g01177 655 SUPERFAMILY Subtilisin-like 14 516 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01177 Lsi-Chr2:14568017 Lsi07g01431 Lsi-Chr7:20842733 0 dispersed
Lsi02g01177 Lsi-Chr2:14568017 Lsi02g01178 Lsi-Chr2:14620661 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01177 - - csv:101213582 1152.5