Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01178 ATGGCCGGAGTCCAAGAGTTTTGGAGAACATGGCATAGATGGGCCTATTCCATCAAAGTGGAAAGGAGGAAATTAATTGGAGCAAACTACTTCAACAAAGGCTTCCTCACGTACTTGAAATCTGAAAATTCCACAGCTGCCCTCTCATCTATCATCAACTCCACTCGCGACTATGACGGTCATGGTTCTCATACTTTGTCCACGGCTGGTGGCAGCTATGTGTATGGCGCCGGCGTGTTTGGGTCGGGTGTCGGAATCGCCAAAGGCGGATCTCCAATGGCTTGTGTCGCCGCCTACAAGGTTTGTTGGCCGCTCAAGCACGGCAGTTGCTTCGATGCTGACATGACCGAGGCATTTGACCATGCCATCTACGATGGTGTCGATGTTCTTTCACTCTCCCTTGGTGGTGAACCGACCAAATACTTTGATGATGCCATTGCCATTGCTGCCTTCCATGCAGTGAAGAAGGGAATCCCTGTTGTGTGCTCCGCTGGGAACTCTGGTCCCAAGGCAAAGACTGTATCTAATACTGCTCCTTGGATTTTGACGGTTGGTGCAAGTACTTTGGATCGTGAATTTCAAGCTCCTATTGAGCTTCAAAATGGTCATCGCTTCATGGTTATTTGCAAAGGTTTGAGTCTTTCGAAAGCATTAAGAGAAAAGAAGCTATACCCATTGATAACGGGAGCTCAGGCGAAAGCGAAGAATGTCACCGTGGACGCCGCCATGCTTTGCAAGCCAGAAACATTGGATCATTCAAAAGTAAAAGGGAAGATATTGGTTTGGTTGAGAGGAGACAATGCAAGAGTGGACAAAGGAGAACAAGCTGCCCTTGCCGGTGCTGCCGGAATGATTCTATGCAACGATAAGCTTAGTGGATTTAAAATCATCGCTGATTTACACGTTCTTCCAGCTTCCCATATCAATTATAATGACGGTCAAGCTGTTCTCTCTTACATCAATTCCACCAAAAATCCGATGGGGTATTTAATCCCACGTCAGCCAAAGTTAACATTAAACCTGCTCCTACTATGGCGGACTTCTCATCTCGAGAACCCAACGTTATTTCACCTGAGATTATCAAGGTTTGGTTTTGCTTACCTTAATCCAGACGTGATCGCAGCATTTTCAGAAGCCGTAAGCCCTACAGGTGAGGGCTTTGACAACAGAACAGTTCCATTCATAACAATGTCAGGCACCTCCATGTCCTGCCCCCATGTCAGTGGCCTTGTCGGCCTCCTTCGAACTCTTCACCCTGACTGGAGCCCATCTGCTATCAAATCTGCCATCATGACCTCTGCCAGAGTTCGCGACAACACAATGCAACCCATGCTCGATGGCGGCTCTCCTGACCTTGTCCCTGCCACCCCCTTTGCCTACGGCTCTGGCCACATTTGCCCCATTGGAGCCATCGACCCCGGCCTCGTCTACGATCTCTCTCCTAATGACTACTTGGAATTCCTTTGCGCCAGCGGCTACGACGAGAAAACCATTCGGGCATTTTCTGACTGCCCTTTCAATTGCCCTACCTCCGCTTCTATTTTGAACTTTAATTATCCTTCTATTGGGGTTCAGAATTTGAATGACAATGTCACCGTCACTAGGAAACTAAAGAATGTTGGCACTTCTGGGGTTTACAGAGCTAGAATTCTCCATCCAGATGGAGTTAAGATTTCTGTGAAGCCCAAAGTTTTGAAGTTTGAAAGAGTTGCAGAGGAGAAGAGCTTTGAATTGACGATGATTGGAATTGTGTCAAAGAATCAAATTGTTGATGGCGTGCTAATTTGGACTGACGGCAAGCACTTCGTTAGAAGTCCCATTGTAGTTTCTTCTGGCTTGTTCTGA 1845 47.21 MAGVQEFWRTWHRWAYSIKVERRKLIGANYFNKGFLTYLKSENSTAALSSIINSTRDYDGHGSHTLSTAGGSYVYGAGVFGSGVGIAKGGSPMACVAAYKVCWPLKHGSCFDADMTEAFDHAIYDGVDVLSLSLGGEPTKYFDDAIAIAAFHAVKKGIPVVCSAGNSGPKAKTVSNTAPWILTVGASTLDREFQAPIELQNGHRFMVICKGLSLSKALREKKLYPLITGAQAKAKNVTVDAAMLCKPETLDHSKVKGKILVWLRGDNARVDKGEQAALAGAAGMILCNDKLSGFKIIADLHVLPASHINYNDGQAVLSYINSTKNPMGYLIPRQPKLTLNLLLLWRTSHLENPTLFHLRLSRFGFAYLNPDVIAAFSEAVSPTGEGFDNRTVPFITMSGTSMSCPHVSGLVGLLRTLHPDWSPSAIKSAIMTSARVRDNTMQPMLDGGSPDLVPATPFAYGSGHICPIGAIDPGLVYDLSPNDYLEFLCASGYDEKTIRAFSDCPFNCPTSASILNFNYPSIGVQNLNDNVTVTRKLKNVGTSGVYRARILHPDGVKISVKPKVLKFERVAEEKSFELTMIGIVSKNQIVDGVLIWTDGKHFVRSPIVVSSGLF 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14620661 14624314 + Lsi02G011780.1 Lsi02g01178 655920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01178 614 ProSitePatterns Serine proteases, subtilase family, serine active site. 399 409 IPR023828 -
Lsi02g01178 614 Gene3D - 488 612 - -
Lsi02g01178 614 SUPERFAMILY Subtilisin-like 52 472 IPR036852 GO:0004252|GO:0006508
Lsi02g01178 614 Pfam Fibronectin type-III domain 516 609 IPR041469 -
Lsi02g01178 614 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 21 612 IPR045051 -
Lsi02g01178 614 ProSiteProfiles Serine proteases, subtilase domain profile. 1 471 - -
Lsi02g01178 614 CDD PA_subtilisin_like 197 330 - -
Lsi02g01178 614 Gene3D - 190 337 - -
Lsi02g01178 614 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 21 612 - -
Lsi02g01178 614 Pfam PA domain 246 315 IPR003137 -
Lsi02g01178 614 Gene3D Peptidase S8/S53 domain 22 484 IPR036852 GO:0004252|GO:0006508
Lsi02g01178 614 Pfam Subtilase family 53 442 IPR000209 GO:0006508|GO:0008236
Lsi02g01178 614 SUPERFAMILY PA domain 249 323 IPR046450 -
Lsi02g01178 614 PRINTS Subtilisin serine protease family (S8) signature 57 70 IPR015500 -
Lsi02g01178 614 PRINTS Subtilisin serine protease family (S8) signature 398 414 IPR015500 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01178 Lsi-Chr2:14620661 Lsi07g01431 Lsi-Chr7:20842733 0 dispersed
Lsi02g01177 Lsi-Chr2:14568017 Lsi02g01178 Lsi-Chr2:14620661 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01178 - - csv:101213582 908.672