Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01199 ATGTTTGAGGAGTATCTGACCAGTGGTCTTAAGGTACATCTTGAACAGTTGGACATTGGTTCTCCTGTGTGGGAAAAAGGACCTCGATTAAGAATGAGCCTGAAGCTTTTCCCTCTCTATGTTGCTGATAGCAATAGTTCTCACAAGTTCAATGACAGTGAGGTTTTACGAATTGTTTCCAAGTTTACAAATTGGAAAATTCAAGATAGCGATATATTTGGACCATATGAACTTCTCAGCTTGTCGATATCAGACATTTATAAGAATGTATTTATCACACCATCATCTGATTCTACTATGAGTAAAGGGGCATTGGCTGGAATAATATTAGGAGCAATTGCTGGCGGAGCAATGTTATCTGCAATTGTTTTTATTTTTATTATAAGATCACGTGTGAGAGGCCACCACATCTCAAGAAGGCGTCATCTGTCAAAAACCTCCATAAATATTGAGGGCGTAAAGGAATTTGGTTACCGTGAAATGGCCCTAGCTACAAACAATTTTCATTATTCCATGGTAGTTGGTCAAGGTGGTTATGGAAAGGTTTACAAAGGAATTCTAGCAGATAGCACAGCTGTTGCTATTAAACGTGCACAGGAGGACTCACTACAGGGTGAAAAAGAGTTCCTAACCGAAATACAATTATTGTCAAGGTTACACCACCGGAATCTTGTGGCTTTGATTGGATATTGCGATGAAGAAGGGGAGCAGATGTTGGCTTATGAGTTTATGTCAAATGGCACGCTGAGGGATCACCTTTCTGTCAATTCTGCAGAACCTTTGAGTTTTGCCACGAGATTAAAAGCTGCCTTGGGTGCAGCTAAGGGAATTCTGTACCTGCATACGGAAGCAGATCCTCCAATATTCCACCGAGATATCAAGTCCAGCAACATATTATTAGACTCTAAATATGTAGCAAAGGTTGCTGATTTTGGACTTTCACGACTTGCACCTCTACCCGATGTAGAAGGTGATGTGCCTGCTCATGTATCAACAGTAGTAAAAGGGACACCGGGTTATCTTGATCCAGAGTACTTTTTGACTCATAAATTGACAGATAAGAGTGATGTTTATAGCCTTGGTGTTGTGTTTTTGGAGCTTTTGACTGGGAGGCACCCAATCTCACATGGCAAGAACATCGTTAGGGAGGTTAATGGTGCATATCAGTCTGGAAAAATATTCTCAATAATTGATGGACGACTGGGATCTTATCCCGCTGAATGTGTAGAAAAATTTGTGACATTGGCTTTGAAGTGTTGCCAAGACGATACAGATGCACGCCCTTCGATGGCCGAAGTTGTTCGAAAGCTTGAAAGTATCTGGCTTATGCTACCCGAGTCTGATACGAAAATTTCAGAGCCTTTGATCTCAGATGTCACAAAAGTGACTACTCCCCCATCTTCATCATCCAACATGAACAACTATTACATATCAGAAGTCTCTGGCAGTGACCTTGTAAGTGGAGTAACTCCCACCATCACGCCCAGATAG 1491 41.38 MFEEYLTSGLKVHLEQLDIGSPVWEKGPRLRMSLKLFPLYVADSNSSHKFNDSEVLRIVSKFTNWKIQDSDIFGPYELLSLSISDIYKNVFITPSSDSTMSKGALAGIILGAIAGGAMLSAIVFIFIIRSRVRGHHISRRRHLSKTSINIEGVKEFGYREMALATNNFHYSMVVGQGGYGKVYKGILADSTAVAIKRAQEDSLQGEKEFLTEIQLLSRLHHRNLVALIGYCDEEGEQMLAYEFMSNGTLRDHLSVNSAEPLSFATRLKAALGAAKGILYLHTEADPPIFHRDIKSSNILLDSKYVAKVADFGLSRLAPLPDVEGDVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGRHPISHGKNIVREVNGAYQSGKIFSIIDGRLGSYPAECVEKFVTLALKCCQDDTDARPSMAEVVRKLESIWLMLPESDTKISEPLISDVTKVTTPPSSSSNMNNYYISEVSGSDLVSGVTPTITPR 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15311779 15331203 - Lsi02G012000.1 Lsi02g01199 655941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01199 496 Gene3D Phosphorylase Kinase; domain 1 139 243 - -
Lsi02g01199 496 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 474 - -
Lsi02g01199 496 Pfam Protein kinase domain 169 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01199 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672|GO:0006468
Lsi02g01199 496 SUPERFAMILY Protein kinase-like (PK-like) 154 470 IPR011009 -
Lsi02g01199 496 ProSitePatterns Protein kinases ATP-binding region signature. 174 196 IPR017441 GO:0005524
Lsi02g01199 496 CDD STKc_IRAK 174 440 - -
Lsi02g01199 496 ProSiteProfiles Protein kinase domain profile. 168 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01199 496 SMART serkin_6 168 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01199 496 Gene3D Transferase(Phosphotransferase) domain 1 244 451 - -
Lsi02g01199 496 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 2 474 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01631 Lsi-Chr1:14723397 Lsi02g01199 Lsi-Chr2:15311779 0 dispersed
Lsi02g01199 Lsi-Chr2:15311779 Lsi03g01283 Lsi-Chr3:23660770 7.63E-92 dispersed
Lsi05g00215 Lsi-Chr5:2930967 Lsi02g01199 Lsi-Chr2:15311779 1.81E-76 dispersed
Lsi02g01199 Lsi-Chr2:15311779 Lsi10g01334 Lsi-Chr10:17550759 3.78E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83398 PF00069 Pkinase 4.40E-48 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01199 - - csv:101208136 867.455