Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01204 ATGGCGGACGAAGTTCAGAATGATGTGAATGATCAGGTGGCAGATATTGCCCCCTTTGATCCAACTAAGAAGAAGAAGAAGAAGAAGGTTGTACTTCAGGATCCGACTGAGGAGATTGTTGACAAGTTAGCAGAGAAAACTGAAAGTTTGTCAGTTTCTGATGGTTTGGAGACCACATTTTCCGGACTTAAAAAGAAGAAGAAAAAACCAGTAGAGGCTAGCTCCTTGAATGACGATGGTGCTGATGTTACGGAGGATTTGGAAGATCAAGCGGGGGAAAATGAAGACCGTGAGGGAATTGTTCTACAGTATCGTTATCCTTGGGAGGGAAGTGATCGCGATTATGAATATGAGGAGCTTCTTGGTCGGGTATTCAACATTCTTAGAGAGAATAATCCAGAGCTTGCAGGCGATAGGCGTAGAACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTTTTTGTCAATTTCATGGATCTATGTAAAACGATGCATCGGCAGCCAGACCATGTTATGGCTTTCTTACTAGCCGAACTGGGAACCAGTGGCTCTCTTGATGGACAGCAGAGATTAGTTGTTAAAGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGTCGATATGTCAATGAATATGTGATTTGCATTGGGTGCAAGAGTCCAGACACTATCCTTTCAAAGGAGAACCGGCTTTTCTTTCTCAGATGCGAGAAGTGTGGTTCTGGACGATCAGTTGCTCCAATTAAAGCTGGCTTTGTTGCTCGTGTTGGCCGGAGGAACACTGGGACATGA 810 44.2 MADEVQNDVNDQVADIAPFDPTKKKKKKKVVLQDPTEEIVDKLAEKTESLSVSDGLETTFSGLKKKKKKPVEASSLNDDGADVTEDLEDQAGENEDREGIVLQYRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICIGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNTGT 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15464005 15474632 + Lsi02G012040.1 Lsi02g01204 655946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01204 269 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 269 IPR045196 GO:0003743|GO:0006413
Lsi02g01204 269 MobiDBLite consensus disorder prediction 60 75 - -
Lsi02g01204 269 Gene3D - 112 254 - -
Lsi02g01204 269 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 218 253 IPR016190 GO:0003743|GO:0006413
Lsi02g01204 269 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 BETA SUBUNIT 1 269 - -
Lsi02g01204 269 MobiDBLite consensus disorder prediction 1 31 - -
Lsi02g01204 269 MobiDBLite consensus disorder prediction 79 93 - -
Lsi02g01204 269 Pfam Domain found in IF2B/IF5 138 247 IPR002735 GO:0003743|GO:0006413
Lsi02g01204 269 MobiDBLite consensus disorder prediction 47 96 - -
Lsi02g01204 269 SMART eIF2Bneu4 139 248 IPR002735 GO:0003743|GO:0006413
Lsi02g01204 269 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 114 221 IPR016189 GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01204 Lsi-Chr2:15464005 Lsi08g00945 Lsi-Chr8:17924831 2.48E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01204 K03238 - csv:101220978 513.457