Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01206 ATGAGCAGAGACACAGAGAGAGCACTAGAACAAACAAGAGAAAGCTACACCATGGATCTTGTCCTGTTAGAGAAGGCTCTGATGGGGATATTCGTGGCCATTGTTATTGCCATTAGCATATCCAAGTTGAAGGGCAAGCGATTTAAACTCCCACCAGGTCCCATTCCCATCCCCATATTTGGAAACTGGCTACAGGTTGGGGATGACTTGAACCACCGCAACTTAACAGAGCTGGCCAAGAAATTCGGTGACATATTTCTATTGAAAATGGGGCAAAGAAACTTAGTGGTAGTTTCCTCACCAGAGTTAGCCAAGGAAGTTCTACAAACCCAAGGAGTAGAATTTGGGTCTAGAACAAGAAACGTTGTGTTTGATATATTCACAGATAAGGGTCAAGATATGGTGTTCACAGTGTACGGTGAGCATTGGAGGAAAATGAGACGAATCATGACCGTTCCTTTTTTCACTAATAAAGTGGTTCAGCAGAACAGGTTGGGTTGGGAAGAGGAGGCTGCAAGAGTTGTGGAGGATTTAAAGAACAATTATTATTATTCAGAGGCTTCAACCACTGGCTTGGTTCTGAGGAAACGGCTACAGCTTCTGATGTATAATAATATGTATAGGATGATGTTTGATAAGAGATTCAACAGCATGGAGGATCCTCTGTTCAACGACCTTAAGCTTATTAATGCAGAGAGGAGTCGATTATCTCAGAGCTTTGAATATAATTATGGTGATTTCATCCCAATACTTAGGCCTTTCCTTAGAGGCTATTTGAATGTGTGTAAGGATGTTAAGGACAGGAGGCTCAAGCTCTTCAAGGACCATTTTGTCGATGAGAGGAGGAGACTGACTAGCACCATGAGCAATAAGGAGGATGGTGTAAAATGTGCCATTGATCATATTGTGGAGGCTCAAGAGAATGGAGAGATCACCGAAGACAATGTTCTCTTCATTGTTGAGAACATCAATGTTGCCGCTATTGAGACAACATTGTGGTCCATGGAGTGGGCTATTGCGGAGCTAGTTAACCACCCCAACATCCAAAAAAAGCTGAGGGACGAGCTTGATTCGGTGCTTGGAAATGGCGTCCAAATTACGGAGCCTGACATTCGCAATCTGCCTTACTTGCAGGCTGTGATCAAGGAGACTTTGCGGTTGAGAATGGCCATTCCTTTGTTAGTGCCTCACATGAATCTTCAAGACGCCAAATTGGCTTCTTATGACATCCCTGCAGAAAGCAAGATTCTAGTGAATGCATGGTGGCTGGCCAATAACCCTGATCATTGGGACAAACCTCAAGAATTCCGACCTGAAAGGTTCTTGGAGGAGGAGCAAAATGTGGAGCCTACTGGGAATGACTTTAGATACCTTCCTTTCGGCGCTGGGAGGAGGAGCTGCCCCGGTATTGTTCTTGCCTTGCCCATCCTTGCTATTACTCTGGGTCGTCTCATTCAGAATTTTGAGTTGCTGCCTCCTCCTGGACACTCCAAGATTGATACCACCGAAAAGCCTGGACAGTTCAGCTTGCAAATATTCAACCACTCCACTATTGTGGCAAAGCCAAGGTTTTTGTGA 1578 44.55 MSRDTERALEQTRESYTMDLVLLEKALMGIFVAIVIAISISKLKGKRFKLPPGPIPIPIFGNWLQVGDDLNHRNLTELAKKFGDIFLLKMGQRNLVVVSSPELAKEVLQTQGVEFGSRTRNVVFDIFTDKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQNRLGWEEEAARVVEDLKNNYYYSEASTTGLVLRKRLQLLMYNNMYRMMFDKRFNSMEDPLFNDLKLINAERSRLSQSFEYNYGDFIPILRPFLRGYLNVCKDVKDRRLKLFKDHFVDERRRLTSTMSNKEDGVKCAIDHIVEAQENGEITEDNVLFIVENINVAAIETTLWSMEWAIAELVNHPNIQKKLRDELDSVLGNGVQITEPDIRNLPYLQAVIKETLRLRMAIPLLVPHMNLQDAKLASYDIPAESKILVNAWWLANNPDHWDKPQEFRPERFLEEEQNVEPTGNDFRYLPFGAGRRSCPGIVLALPILAITLGRLIQNFELLPPPGHSKIDTTEKPGQFSLQIFNHSTIVAKPRFL 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15484851 15487647 + Lsi02G012060.1 Lsi02g01206 655948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01206 525 SUPERFAMILY Cytochrome P450 51 523 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01206 525 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 460 469 IPR017972 GO:0005506|GO:0016705
Lsi02g01206 525 Gene3D Cytochrome P450 37 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01206 525 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 18 524 - -
Lsi02g01206 525 Pfam Cytochrome P450 51 511 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01206 525 PRINTS E-class P450 group I signature 457 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01206 525 PRINTS E-class P450 group I signature 467 490 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01206 525 PRINTS E-class P450 group I signature 103 124 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01206 525 PRINTS E-class P450 group I signature 419 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01206 525 PRINTS E-class P450 group I signature 201 219 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01206 525 PRINTS E-class P450 group I signature 79 98 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01206 525 PRINTS E-class P450 group I signature 315 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01206 525 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01206 525 PRINTS E-class P450 group I signature 378 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01206 525 PRINTS P450 superfamily signature 458 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01206 525 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01206 525 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01206 525 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 18 524 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01206 Lsi-Chr2:15484851 Lsi10g01487 Lsi-Chr10:19009439 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01206 K00487 - csv:101208511 913.679