Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01207 ATGGCGGCCTCCAATCGCTGCATGAACACTTCTTGCAGAGCCCTCACCCCCCACGATTGGACCAAAGGATGGCCTCTGGGATCTGCTGGATTCGCACATCTCTGCCTCAACTGCGGATCCGCTTATGAAAATTCAGTCTTCTGTGATACATATCACTTAGAGGAAACTGGTTGGAGGGATTGCAGTTTTTGTGGCAAGAGAATTCACTGTGGATGTATAGCTTCTAAGTCTATGTTTGAATGTTTGGATTATGGAGGTATTGGGTGCACTAGCTGTGTGAAAAGATCTCGACTTGGAGTGATCCGGAGAGATGAAATTTCTAATGGCTTTGATGCAGTGACAGTTGGTAATGTTGGCCTTCTGCCACCTGCTTCTGTTGAGGATCAAGTGGTTCGAAATGGCATTAATGAGGAAAAGCTTTTACAGTTGTGTAACATCATGGAGGCAAATGAACCCGACCACTTTCAGCAATCACAAAGAGTTGACAGAAGTGCATCTCCTGCACAAAACAGAGGAGAAAATCTCAGGAGCCCATTTGGAGAAGTTGGATCAAGCTTTTTTAATATGAATAAGCTACCTGTTAAATGCCAACCATCTGTTGGTTCATTAACGTACTCCAAACTAGATACTAGCAGACCACACTTAGAACTAAAAGAAATGAAAGAATCTCTAAGTCAGCCATCGTTAAATATAACTTTGGGAGTTCCATTAGGTACTCCGAACTTTGTGGTACCCTTTCCAGGAAGTGCTGCTGATGAGGATGAAAAGAGCATTCTGCCATTTCAACAGGGTCAAAGATCACGTCCAATTTTTCCCAAGCTCATAAAAACTGGGACCACAGTTAATCCTGAAGCAAGAAAGGGAATGGCACCTCTGGTGCGTATTGCTCGGCCACCTGCTGAAGGTCGAGGTAAGAACCAACTTCTTCCAAGGTACTGGCCAAGGATTACTGACCAAGAGCTAGAACAATTATCTGGAGATTTGAATTCTACTATTGTTCCACTCTTTGAAAAGGTGCTGAGTGCTAGTGATGCTGGTCGGATTGGTCGTTTGGTTCTGCCAAAAGCATGTGCTGAAGCATATTTCCCCCCCATCTCCCAATCAGAAGGTCTTCCTGTAAGGATTCAAGATGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCTAACAACAACAGCAGAATGTATGTTCTGGAGGGCGTTACTCCTTGTATACAATCCATGCAATTAAGAGCTGGTGATACTGTCACTTTTAGTCGGATAGATCCTGGAGGTCAATTAGTCATGGGATTTCGAAAAGCAACAAATTCTACTGATATACAGGATGCGAAGATCCCTACACTTTCTAATGGCTCTCATTCGGGTGACGCCTCATTCTCTGGGGTTTTTCAGAATTTGCCTTTAAGAGTTGAAGGAGATACTAGTTTGCGTAAAAGTGAAAATTTTGGGGGGAGGACAAAGGATGCTTCAGGACAACAACCAATGTTAACCATGGAGAAGAAAGGGGCTCGAAACATTGGGTCTAAAAATAAGAGGTTGCTCATGCATAGTGAAGACGCTTTGGAGTTAAGACTCACTTGGGAAGAAGCTCAAGATCTACTCCGTCCTCCACCAAGTGCAAATCCCACCATTGTCACTATTGATGACCATGAATTCGAAGAGTATGATGAACCTCCAGTTTTTGGCAAGAGGACTATATTCACTGTCCGACCAACTGGGGAACAGAAACAATGGGTTCAGTGTGATGATTGCTCAAAATGGCGGAGGTTGCCTGTGGATGTTCTTCTCCCTCCAAAGTGGAGTTGTTCAGATAATGTTTGGGATTTGAGCAGATGTACATGTTCTGCACCTGAAGAGATCAGCACAAAGGAACAGGAGAATCTTCTAAGAGCAAGTAAAGATTTTAAGAAACTTAAAATCATGAAGAGCCAGAAGTCTATTCAAGAACTTGAGCCTTCTGGTTTGGATGCGCTGGCTAGTGCTGCTGTTCTGGGTGATAGTATGGCTGACTTGCAGGAATCAAGTACGACGACCAGGCATCCTCGGCACCGACCAGGATGCACTTGCATCGTGTGCATTCAGCCTCCAAGTGGGAAAGGGAAGCATAAATCTACATGCACATGCAATGTCTGCTTGACTGTAAAACGCCGTTTTAAAACACTTATGCTGCGTAAGAAGAAACGCCAATCAGAACGTGAAGTGGAAACTCTGCTCAAGGATAGGAATCCACAATTCGATGAAACAGGAACAGTTGGGACACTGAGGGGTACGTCTCTGCAAACACACTATTCAGAGAGCAAAGGAAGCCAGAGCAGGATAAAAGATGAGGAGGCTACAAATAGCAGTGGGCAAATTGACTTGAACTGCCACCCCGACCGTGAGGACATGGAACTGGAGGGAGCAGGATTAAGCATGATGAGTCTGGTTGAAGCTGCCAGCCAACCTTTAGATAGCTATTCAAAGCAAATTGGCGTCTCCGGCGTTACAAGTGAGCAGCAGTCCAGTCAACCAAGTAGCGTGGAGAGTGAGAGACGCCTGTCTGAGGAAGTGTGTCATGGATCAGGACACGAGAGCACAAGTGATGGACGCAGAGAGCAGCATCGAGATTAA 2616 44.95 MAASNRCMNTSCRALTPHDWTKGWPLGSAGFAHLCLNCGSAYENSVFCDTYHLEETGWRDCSFCGKRIHCGCIASKSMFECLDYGGIGCTSCVKRSRLGVIRRDEISNGFDAVTVGNVGLLPPASVEDQVVRNGINEEKLLQLCNIMEANEPDHFQQSQRVDRSASPAQNRGENLRSPFGEVGSSFFNMNKLPVKCQPSVGSLTYSKLDTSRPHLELKEMKESLSQPSLNITLGVPLGTPNFVVPFPGSAADEDEKSILPFQQGQRSRPIFPKLIKTGTTVNPEARKGMAPLVRIARPPAEGRGKNQLLPRYWPRITDQELEQLSGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPVRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGQLVMGFRKATNSTDIQDAKIPTLSNGSHSGDASFSGVFQNLPLRVEGDTSLRKSENFGGRTKDASGQQPMLTMEKKGARNIGSKNKRLLMHSEDALELRLTWEEAQDLLRPPPSANPTIVTIDDHEFEEYDEPPVFGKRTIFTVRPTGEQKQWVQCDDCSKWRRLPVDVLLPPKWSCSDNVWDLSRCTCSAPEEISTKEQENLLRASKDFKKLKIMKSQKSIQELEPSGLDALASAAVLGDSMADLQESSTTTRHPRHRPGCTCIVCIQPPSGKGKHKSTCTCNVCLTVKRRFKTLMLRKKKRQSEREVETLLKDRNPQFDETGTVGTLRGTSLQTHYSESKGSQSRIKDEEATNSSGQIDLNCHPDREDMELEGAGLSMMSLVEAASQPLDSYSKQIGVSGVTSEQQSSQPSSVESERRLSEEVCHGSGHESTSDGRREQHRD 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15495084 15506011 + Lsi02G012070.1 Lsi02g01207 655949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01207 871 CDD B3_DNA 334 435 IPR003340 GO:0003677
Lsi02g01207 871 MobiDBLite consensus disorder prediction 155 175 - -
Lsi02g01207 871 Gene3D - 571 623 - -
Lsi02g01207 871 MobiDBLite consensus disorder prediction 748 769 - -
Lsi02g01207 871 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 4 838 - -
Lsi02g01207 871 Gene3D - 314 441 IPR015300 -
Lsi02g01207 871 MobiDBLite consensus disorder prediction 731 793 - -
Lsi02g01207 871 MobiDBLite consensus disorder prediction 155 173 - -
Lsi02g01207 871 ProSiteProfiles Zinc finger CW-type profile. 574 624 IPR011124 GO:0008270
Lsi02g01207 871 MobiDBLite consensus disorder prediction 824 843 - -
Lsi02g01207 871 Pfam B3 DNA binding domain 336 435 IPR003340 GO:0003677
Lsi02g01207 871 MobiDBLite consensus disorder prediction 844 871 - -
Lsi02g01207 871 SMART B3_2 336 436 IPR003340 GO:0003677
Lsi02g01207 871 MobiDBLite consensus disorder prediction 824 871 - -
Lsi02g01207 871 Pfam CW-type Zinc Finger 579 622 IPR011124 GO:0008270
Lsi02g01207 871 ProSiteProfiles B3 DNA-binding domain profile. 336 437 IPR003340 GO:0003677
Lsi02g01207 871 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 838 - -
Lsi02g01207 871 SUPERFAMILY DNA-binding pseudobarrel domain 333 437 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00343 Lsi-Chr1:3038390 Lsi02g01207 Lsi-Chr2:15495084 8.60E-25 dispersed
Lsi02g01207 Lsi-Chr2:15495084 Lsi03g02281 Lsi-Chr3:33688348 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24814 PF02362 B3 3.50E-16 CL0405 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01207 - - cmo:103497016 1595.1