Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g01207 | ATGGCGGCCTCCAATCGCTGCATGAACACTTCTTGCAGAGCCCTCACCCCCCACGATTGGACCAAAGGATGGCCTCTGGGATCTGCTGGATTCGCACATCTCTGCCTCAACTGCGGATCCGCTTATGAAAATTCAGTCTTCTGTGATACATATCACTTAGAGGAAACTGGTTGGAGGGATTGCAGTTTTTGTGGCAAGAGAATTCACTGTGGATGTATAGCTTCTAAGTCTATGTTTGAATGTTTGGATTATGGAGGTATTGGGTGCACTAGCTGTGTGAAAAGATCTCGACTTGGAGTGATCCGGAGAGATGAAATTTCTAATGGCTTTGATGCAGTGACAGTTGGTAATGTTGGCCTTCTGCCACCTGCTTCTGTTGAGGATCAAGTGGTTCGAAATGGCATTAATGAGGAAAAGCTTTTACAGTTGTGTAACATCATGGAGGCAAATGAACCCGACCACTTTCAGCAATCACAAAGAGTTGACAGAAGTGCATCTCCTGCACAAAACAGAGGAGAAAATCTCAGGAGCCCATTTGGAGAAGTTGGATCAAGCTTTTTTAATATGAATAAGCTACCTGTTAAATGCCAACCATCTGTTGGTTCATTAACGTACTCCAAACTAGATACTAGCAGACCACACTTAGAACTAAAAGAAATGAAAGAATCTCTAAGTCAGCCATCGTTAAATATAACTTTGGGAGTTCCATTAGGTACTCCGAACTTTGTGGTACCCTTTCCAGGAAGTGCTGCTGATGAGGATGAAAAGAGCATTCTGCCATTTCAACAGGGTCAAAGATCACGTCCAATTTTTCCCAAGCTCATAAAAACTGGGACCACAGTTAATCCTGAAGCAAGAAAGGGAATGGCACCTCTGGTGCGTATTGCTCGGCCACCTGCTGAAGGTCGAGGTAAGAACCAACTTCTTCCAAGGTACTGGCCAAGGATTACTGACCAAGAGCTAGAACAATTATCTGGAGATTTGAATTCTACTATTGTTCCACTCTTTGAAAAGGTGCTGAGTGCTAGTGATGCTGGTCGGATTGGTCGTTTGGTTCTGCCAAAAGCATGTGCTGAAGCATATTTCCCCCCCATCTCCCAATCAGAAGGTCTTCCTGTAAGGATTCAAGATGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCTAACAACAACAGCAGAATGTATGTTCTGGAGGGCGTTACTCCTTGTATACAATCCATGCAATTAAGAGCTGGTGATACTGTCACTTTTAGTCGGATAGATCCTGGAGGTCAATTAGTCATGGGATTTCGAAAAGCAACAAATTCTACTGATATACAGGATGCGAAGATCCCTACACTTTCTAATGGCTCTCATTCGGGTGACGCCTCATTCTCTGGGGTTTTTCAGAATTTGCCTTTAAGAGTTGAAGGAGATACTAGTTTGCGTAAAAGTGAAAATTTTGGGGGGAGGACAAAGGATGCTTCAGGACAACAACCAATGTTAACCATGGAGAAGAAAGGGGCTCGAAACATTGGGTCTAAAAATAAGAGGTTGCTCATGCATAGTGAAGACGCTTTGGAGTTAAGACTCACTTGGGAAGAAGCTCAAGATCTACTCCGTCCTCCACCAAGTGCAAATCCCACCATTGTCACTATTGATGACCATGAATTCGAAGAGTATGATGAACCTCCAGTTTTTGGCAAGAGGACTATATTCACTGTCCGACCAACTGGGGAACAGAAACAATGGGTTCAGTGTGATGATTGCTCAAAATGGCGGAGGTTGCCTGTGGATGTTCTTCTCCCTCCAAAGTGGAGTTGTTCAGATAATGTTTGGGATTTGAGCAGATGTACATGTTCTGCACCTGAAGAGATCAGCACAAAGGAACAGGAGAATCTTCTAAGAGCAAGTAAAGATTTTAAGAAACTTAAAATCATGAAGAGCCAGAAGTCTATTCAAGAACTTGAGCCTTCTGGTTTGGATGCGCTGGCTAGTGCTGCTGTTCTGGGTGATAGTATGGCTGACTTGCAGGAATCAAGTACGACGACCAGGCATCCTCGGCACCGACCAGGATGCACTTGCATCGTGTGCATTCAGCCTCCAAGTGGGAAAGGGAAGCATAAATCTACATGCACATGCAATGTCTGCTTGACTGTAAAACGCCGTTTTAAAACACTTATGCTGCGTAAGAAGAAACGCCAATCAGAACGTGAAGTGGAAACTCTGCTCAAGGATAGGAATCCACAATTCGATGAAACAGGAACAGTTGGGACACTGAGGGGTACGTCTCTGCAAACACACTATTCAGAGAGCAAAGGAAGCCAGAGCAGGATAAAAGATGAGGAGGCTACAAATAGCAGTGGGCAAATTGACTTGAACTGCCACCCCGACCGTGAGGACATGGAACTGGAGGGAGCAGGATTAAGCATGATGAGTCTGGTTGAAGCTGCCAGCCAACCTTTAGATAGCTATTCAAAGCAAATTGGCGTCTCCGGCGTTACAAGTGAGCAGCAGTCCAGTCAACCAAGTAGCGTGGAGAGTGAGAGACGCCTGTCTGAGGAAGTGTGTCATGGATCAGGACACGAGAGCACAAGTGATGGACGCAGAGAGCAGCATCGAGATTAA | 2616 | 44.95 | MAASNRCMNTSCRALTPHDWTKGWPLGSAGFAHLCLNCGSAYENSVFCDTYHLEETGWRDCSFCGKRIHCGCIASKSMFECLDYGGIGCTSCVKRSRLGVIRRDEISNGFDAVTVGNVGLLPPASVEDQVVRNGINEEKLLQLCNIMEANEPDHFQQSQRVDRSASPAQNRGENLRSPFGEVGSSFFNMNKLPVKCQPSVGSLTYSKLDTSRPHLELKEMKESLSQPSLNITLGVPLGTPNFVVPFPGSAADEDEKSILPFQQGQRSRPIFPKLIKTGTTVNPEARKGMAPLVRIARPPAEGRGKNQLLPRYWPRITDQELEQLSGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPVRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGQLVMGFRKATNSTDIQDAKIPTLSNGSHSGDASFSGVFQNLPLRVEGDTSLRKSENFGGRTKDASGQQPMLTMEKKGARNIGSKNKRLLMHSEDALELRLTWEEAQDLLRPPPSANPTIVTIDDHEFEEYDEPPVFGKRTIFTVRPTGEQKQWVQCDDCSKWRRLPVDVLLPPKWSCSDNVWDLSRCTCSAPEEISTKEQENLLRASKDFKKLKIMKSQKSIQELEPSGLDALASAAVLGDSMADLQESSTTTRHPRHRPGCTCIVCIQPPSGKGKHKSTCTCNVCLTVKRRFKTLMLRKKKRQSEREVETLLKDRNPQFDETGTVGTLRGTSLQTHYSESKGSQSRIKDEEATNSSGQIDLNCHPDREDMELEGAGLSMMSLVEAASQPLDSYSKQIGVSGVTSEQQSSQPSSVESERRLSEEVCHGSGHESTSDGRREQHRD | 871 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 15495084 | 15506011 | + | Lsi02G012070.1 | Lsi02g01207 | 655949 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g01207 | 871 | CDD | B3_DNA | 334 | 435 | IPR003340 | GO:0003677 | |
Lsi02g01207 | 871 | MobiDBLite | consensus disorder prediction | 155 | 175 | - | - | |
Lsi02g01207 | 871 | Gene3D | - | 571 | 623 | - | - | |
Lsi02g01207 | 871 | MobiDBLite | consensus disorder prediction | 748 | 769 | - | - | |
Lsi02g01207 | 871 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 | 4 | 838 | - | - | |
Lsi02g01207 | 871 | Gene3D | - | 314 | 441 | IPR015300 | - | |
Lsi02g01207 | 871 | MobiDBLite | consensus disorder prediction | 731 | 793 | - | - | |
Lsi02g01207 | 871 | MobiDBLite | consensus disorder prediction | 155 | 173 | - | - | |
Lsi02g01207 | 871 | ProSiteProfiles | Zinc finger CW-type profile. | 574 | 624 | IPR011124 | GO:0008270 | |
Lsi02g01207 | 871 | MobiDBLite | consensus disorder prediction | 824 | 843 | - | - | |
Lsi02g01207 | 871 | Pfam | B3 DNA binding domain | 336 | 435 | IPR003340 | GO:0003677 | |
Lsi02g01207 | 871 | MobiDBLite | consensus disorder prediction | 844 | 871 | - | - | |
Lsi02g01207 | 871 | SMART | B3_2 | 336 | 436 | IPR003340 | GO:0003677 | |
Lsi02g01207 | 871 | MobiDBLite | consensus disorder prediction | 824 | 871 | - | - | |
Lsi02g01207 | 871 | Pfam | CW-type Zinc Finger | 579 | 622 | IPR011124 | GO:0008270 | |
Lsi02g01207 | 871 | ProSiteProfiles | B3 DNA-binding domain profile. | 336 | 437 | IPR003340 | GO:0003677 | |
Lsi02g01207 | 871 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 | 4 | 838 | - | - | |
Lsi02g01207 | 871 | SUPERFAMILY | DNA-binding pseudobarrel domain | 333 | 437 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00343 | Lsi-Chr1:3038390 | Lsi02g01207 | Lsi-Chr2:15495084 | 8.60E-25 | dispersed | |
Lsi02g01207 | Lsi-Chr2:15495084 | Lsi03g02281 | Lsi-Chr3:33688348 | 0 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24814 | PF02362 | B3 | 3.50E-16 | CL0405 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g01207 | - | - | cmo:103497016 | 1595.1 |