Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g01215 | ATGGCCTCCTCTTCCGGGAGTTTAGATACCTCTGCTAATTCTCATCCCTCTTTCACTTTCTCTACTCATCCTTTTACGACTTCTTCTTACTCTGATCTTCTCGCCTCCGCCAACAACCATCCTCCTTCCTCCGTCGCACCTCACGCTGCTCTCCGGGCTTTCGGCACCGGAGTTCCTAAATTCAAATCCCTTCCTCCTCCTTCTCTCCCTCTCTCTCCTCCTCCCATGTCTCCTTCTTCCTTTTTCGCTATTCCTCCTGGCTTGAGTCCTGCCGAGCTTCTTGATTCCCCTGTTCTTCTCAGTGCTTCTCATGTTCTGCCGTCGCCGACCACTGGTAGTTTTCCGTCTCAGTCGTTGAATTGGAAGAGCAATTCTCGGTATAATCAGCAGAGTATTAAGGAAGAAAACAAATATTTGTCTAATTTCTCATTTCAAACTCAATCGTCAAAGTTGCCACCGACGTCTTTTCAGCCTTCATCCACCACAGCTCCCACGAATCAGGGATGGAGTTTTCAAGATCAGAGCAAGAAAGAGGATGGTTTTGCGTCGGAGAAGAATATGGTGAAGCCGGAGTTCGGATCGATGCGGAGCTTCTCACCGGAATATGGAGTTGTTCAAAACCAGAGCCAAAACAACGGTAGCGGGGAGTTGCAGTCTGACTATGGCAACAATTACTCTCAACAATCTCAGACGGTGAATCGAAGATCGGACGACGGCTACAACTGGAGAAAATATGGCCAAAAACAGGTTAAAGGAAGTGAAAATCCGAGAAGCTATTACAAGTGCACTTTCCCCAATTGTCCAACAAAGAAAAAGGTCGAAAGATCCTTAGATGGACAGATCACAGAGATCGTTTACAAAGGCAGCCATAACCATCCAAAGCCCCAATCCACGAGGAGGTCGTCGCTGTCGTCGGGCGGTTCTTCCCACTCCATGGTGGTTTCGAATCAGGCCACCAACGAGATGGCGGACCAGTCATTTGCAACCCAAGGCAGCAGCCAATTCGACGGCGTTGCAACGCCGGAGAATTCCTCAATTTCAATCGGCGACGACGACTTCGATCGGAGCTCTCAAAAGAGCAAATCCGGAGGGGACGATTTTGATGAGGACGAACCAGAGGCTAAGAGATGGCGAAGGGAAGGTGACAACAATGAAGGTATTTCGGCCGTTGGTAGCCGGACAGTGAGAGAGCCGAGAGTCGTAGTCCAAACCACCAGCGACATCGACATTCTCGACGACGGTTACCGGTGGAGGAAGTACGGTCAGAAAGTTGTGAAGGGTAACCCAAATCCAAGGAGTTACTACAAATGCACAAACCCAGGATGTCCAGTAAGAAAGCATGTGGAGAGAGCTTCACATGATCTAAGGGCAGTGATCACAACTTACGAAGGAAAGCACAATCACGATGTTCCACCGGCACGTGGCAGCGGAAGCCATTCCCTCAGCCGTCCATTTCCCAACAACGACCCTCCGGCCACCGCGATCCGCCCATCAGCGGTGACCCATCAATCAAACAATGGGGGCCATCTGCAGGGTCTGAGGCTGCAGCAATCTTCAGATTCCCAAACAGCATTCACAGTGGAAATGGTACAAAATGGGAATGGATTTTCATTCCCAGAATTTGGAAACTCAATGGGAATGGGAATGGGATCTTACATGAACCAAACACAACAGTCCAATGACAATTTATTCACCAGAGCCAAAGAAGAGCCAAGAGATCATGACATGTTCATCCAATCTCTCCTATGTTAG | 1752 | 49.14 | MASSSGSLDTSANSHPSFTFSTHPFTTSSYSDLLASANNHPPSSVAPHAALRAFGTGVPKFKSLPPPSLPLSPPPMSPSSFFAIPPGLSPAELLDSPVLLSASHVLPSPTTGSFPSQSLNWKSNSRYNQQSIKEENKYLSNFSFQTQSSKLPPTSFQPSSTTAPTNQGWSFQDQSKKEDGFASEKNMVKPEFGSMRSFSPEYGVVQNQSQNNGSGELQSDYGNNYSQQSQTVNRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSLSSGGSSHSMVVSNQATNEMADQSFATQGSSQFDGVATPENSSISIGDDDFDRSSQKSKSGGDDFDEDEPEAKRWRREGDNNEGISAVGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPPARGSGSHSLSRPFPNNDPPATAIRPSAVTHQSNNGGHLQGLRLQQSSDSQTAFTVEMVQNGNGFSFPEFGNSMGMGMGSYMNQTQQSNDNLFTRAKEEPRDHDMFIQSLLC | 583 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 15697111 | 15701461 | - | Lsi02G012150.1 | Lsi02g01215 | 655957 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g01215 | 583 | MobiDBLite | consensus disorder prediction | 205 | 236 | - | - | |
Lsi02g01215 | 583 | MobiDBLite | consensus disorder prediction | 291 | 313 | - | - | |
Lsi02g01215 | 583 | MobiDBLite | consensus disorder prediction | 348 | 383 | - | - | |
Lsi02g01215 | 583 | SUPERFAMILY | WRKY DNA-binding domain | 403 | 471 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi02g01215 | 583 | MobiDBLite | consensus disorder prediction | 149 | 176 | - | - | |
Lsi02g01215 | 583 | SUPERFAMILY | WRKY DNA-binding domain | 235 | 295 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi02g01215 | 583 | Pfam | WRKY DNA -binding domain | 237 | 293 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi02g01215 | 583 | Pfam | WRKY DNA -binding domain | 412 | 468 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi02g01215 | 583 | ProSiteProfiles | WRKY domain profile. | 406 | 471 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi02g01215 | 583 | MobiDBLite | consensus disorder prediction | 149 | 181 | - | - | |
Lsi02g01215 | 583 | MobiDBLite | consensus disorder prediction | 205 | 242 | - | - | |
Lsi02g01215 | 583 | MobiDBLite | consensus disorder prediction | 330 | 392 | - | - | |
Lsi02g01215 | 583 | Gene3D | WRKY domain | 222 | 296 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi02g01215 | 583 | PANTHER | WRKY TRANSCRIPTION FACTOR WRKY24-LIKE | 47 | 545 | - | - | |
Lsi02g01215 | 583 | MobiDBLite | consensus disorder prediction | 286 | 313 | - | - | |
Lsi02g01215 | 583 | MobiDBLite | consensus disorder prediction | 330 | 347 | - | - | |
Lsi02g01215 | 583 | MobiDBLite | consensus disorder prediction | 497 | 519 | - | - | |
Lsi02g01215 | 583 | SMART | WRKY_cls | 236 | 294 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi02g01215 | 583 | SMART | WRKY_cls | 411 | 470 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi02g01215 | 583 | MobiDBLite | consensus disorder prediction | 462 | 519 | - | - | |
Lsi02g01215 | 583 | Gene3D | WRKY domain | 398 | 464 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi02g01215 | 583 | ProSiteProfiles | WRKY domain profile. | 237 | 295 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi02g01215 | 583 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 47 | 545 | IPR044810 | GO:0003700 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01215 | Lsi-Chr2:15697111 | Lsi03g02255 | Lsi-Chr3:33499183 | 8.92E-119 | dispersed | |
Lsi05g00523 | Lsi-Chr5:6549831 | Lsi02g01215 | Lsi-Chr2:15697111 | 2.69E-20 | dispersed | |
Lsi11g01439 | Lsi-Chr11:22919194 | Lsi02g01215 | Lsi-Chr2:15697111 | 2.08E-13 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24815 | PF03106 | WRKY | 3.60E-25 | CL0274 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g01215 | K13424 | - | csv:101207158 | 1006.9 |