Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01215 ATGGCCTCCTCTTCCGGGAGTTTAGATACCTCTGCTAATTCTCATCCCTCTTTCACTTTCTCTACTCATCCTTTTACGACTTCTTCTTACTCTGATCTTCTCGCCTCCGCCAACAACCATCCTCCTTCCTCCGTCGCACCTCACGCTGCTCTCCGGGCTTTCGGCACCGGAGTTCCTAAATTCAAATCCCTTCCTCCTCCTTCTCTCCCTCTCTCTCCTCCTCCCATGTCTCCTTCTTCCTTTTTCGCTATTCCTCCTGGCTTGAGTCCTGCCGAGCTTCTTGATTCCCCTGTTCTTCTCAGTGCTTCTCATGTTCTGCCGTCGCCGACCACTGGTAGTTTTCCGTCTCAGTCGTTGAATTGGAAGAGCAATTCTCGGTATAATCAGCAGAGTATTAAGGAAGAAAACAAATATTTGTCTAATTTCTCATTTCAAACTCAATCGTCAAAGTTGCCACCGACGTCTTTTCAGCCTTCATCCACCACAGCTCCCACGAATCAGGGATGGAGTTTTCAAGATCAGAGCAAGAAAGAGGATGGTTTTGCGTCGGAGAAGAATATGGTGAAGCCGGAGTTCGGATCGATGCGGAGCTTCTCACCGGAATATGGAGTTGTTCAAAACCAGAGCCAAAACAACGGTAGCGGGGAGTTGCAGTCTGACTATGGCAACAATTACTCTCAACAATCTCAGACGGTGAATCGAAGATCGGACGACGGCTACAACTGGAGAAAATATGGCCAAAAACAGGTTAAAGGAAGTGAAAATCCGAGAAGCTATTACAAGTGCACTTTCCCCAATTGTCCAACAAAGAAAAAGGTCGAAAGATCCTTAGATGGACAGATCACAGAGATCGTTTACAAAGGCAGCCATAACCATCCAAAGCCCCAATCCACGAGGAGGTCGTCGCTGTCGTCGGGCGGTTCTTCCCACTCCATGGTGGTTTCGAATCAGGCCACCAACGAGATGGCGGACCAGTCATTTGCAACCCAAGGCAGCAGCCAATTCGACGGCGTTGCAACGCCGGAGAATTCCTCAATTTCAATCGGCGACGACGACTTCGATCGGAGCTCTCAAAAGAGCAAATCCGGAGGGGACGATTTTGATGAGGACGAACCAGAGGCTAAGAGATGGCGAAGGGAAGGTGACAACAATGAAGGTATTTCGGCCGTTGGTAGCCGGACAGTGAGAGAGCCGAGAGTCGTAGTCCAAACCACCAGCGACATCGACATTCTCGACGACGGTTACCGGTGGAGGAAGTACGGTCAGAAAGTTGTGAAGGGTAACCCAAATCCAAGGAGTTACTACAAATGCACAAACCCAGGATGTCCAGTAAGAAAGCATGTGGAGAGAGCTTCACATGATCTAAGGGCAGTGATCACAACTTACGAAGGAAAGCACAATCACGATGTTCCACCGGCACGTGGCAGCGGAAGCCATTCCCTCAGCCGTCCATTTCCCAACAACGACCCTCCGGCCACCGCGATCCGCCCATCAGCGGTGACCCATCAATCAAACAATGGGGGCCATCTGCAGGGTCTGAGGCTGCAGCAATCTTCAGATTCCCAAACAGCATTCACAGTGGAAATGGTACAAAATGGGAATGGATTTTCATTCCCAGAATTTGGAAACTCAATGGGAATGGGAATGGGATCTTACATGAACCAAACACAACAGTCCAATGACAATTTATTCACCAGAGCCAAAGAAGAGCCAAGAGATCATGACATGTTCATCCAATCTCTCCTATGTTAG 1752 49.14 MASSSGSLDTSANSHPSFTFSTHPFTTSSYSDLLASANNHPPSSVAPHAALRAFGTGVPKFKSLPPPSLPLSPPPMSPSSFFAIPPGLSPAELLDSPVLLSASHVLPSPTTGSFPSQSLNWKSNSRYNQQSIKEENKYLSNFSFQTQSSKLPPTSFQPSSTTAPTNQGWSFQDQSKKEDGFASEKNMVKPEFGSMRSFSPEYGVVQNQSQNNGSGELQSDYGNNYSQQSQTVNRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSLSSGGSSHSMVVSNQATNEMADQSFATQGSSQFDGVATPENSSISIGDDDFDRSSQKSKSGGDDFDEDEPEAKRWRREGDNNEGISAVGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPPARGSGSHSLSRPFPNNDPPATAIRPSAVTHQSNNGGHLQGLRLQQSSDSQTAFTVEMVQNGNGFSFPEFGNSMGMGMGSYMNQTQQSNDNLFTRAKEEPRDHDMFIQSLLC 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15697111 15701461 - Lsi02G012150.1 Lsi02g01215 655957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01215 583 MobiDBLite consensus disorder prediction 205 236 - -
Lsi02g01215 583 MobiDBLite consensus disorder prediction 291 313 - -
Lsi02g01215 583 MobiDBLite consensus disorder prediction 348 383 - -
Lsi02g01215 583 SUPERFAMILY WRKY DNA-binding domain 403 471 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi02g01215 583 MobiDBLite consensus disorder prediction 149 176 - -
Lsi02g01215 583 SUPERFAMILY WRKY DNA-binding domain 235 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi02g01215 583 Pfam WRKY DNA -binding domain 237 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi02g01215 583 Pfam WRKY DNA -binding domain 412 468 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi02g01215 583 ProSiteProfiles WRKY domain profile. 406 471 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi02g01215 583 MobiDBLite consensus disorder prediction 149 181 - -
Lsi02g01215 583 MobiDBLite consensus disorder prediction 205 242 - -
Lsi02g01215 583 MobiDBLite consensus disorder prediction 330 392 - -
Lsi02g01215 583 Gene3D WRKY domain 222 296 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi02g01215 583 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 47 545 - -
Lsi02g01215 583 MobiDBLite consensus disorder prediction 286 313 - -
Lsi02g01215 583 MobiDBLite consensus disorder prediction 330 347 - -
Lsi02g01215 583 MobiDBLite consensus disorder prediction 497 519 - -
Lsi02g01215 583 SMART WRKY_cls 236 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi02g01215 583 SMART WRKY_cls 411 470 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi02g01215 583 MobiDBLite consensus disorder prediction 462 519 - -
Lsi02g01215 583 Gene3D WRKY domain 398 464 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi02g01215 583 ProSiteProfiles WRKY domain profile. 237 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi02g01215 583 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 47 545 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01215 Lsi-Chr2:15697111 Lsi03g02255 Lsi-Chr3:33499183 8.92E-119 dispersed
Lsi05g00523 Lsi-Chr5:6549831 Lsi02g01215 Lsi-Chr2:15697111 2.69E-20 dispersed
Lsi11g01439 Lsi-Chr11:22919194 Lsi02g01215 Lsi-Chr2:15697111 2.08E-13 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24815 PF03106 WRKY 3.60E-25 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01215 K13424 - csv:101207158 1006.9