Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01234 ATGTCGACGACCCAGAAGCCCGAACAACTGGTTTGCGTCACCGGCGGCAGCGGCTGTATCGGATCCTGGCTCGTTCACCTCCTCCTCCTCCGCGGCTACTCTGTTCACGCCACTGTCCAAAATCTCAGTTACACTCCCACTTTCATCCCTATCTTTCTCCAGCTTCCTCTTTATTCTTTTCAAACTTCCGAGGACGAACGCGAAACCAAGCATCTGGAAGATTTAGAAGGAGCGGAAGCTCGTCTTCGTCTCTTCCAAATCGACCTCCTCGATTACGACTCCATTGTCCCCGCCGTCACTGGTTGCGCCGGCGTCTTCCACGTCGCGTCTCCCTGCATCGTTGATCCTGTAGACGATCCTGAGAGGGATTTATTGGATCCGGCTATCAAAGGAACCATCAATGTCCTGACGGCGGCTAAGGAGGCTGGAGTACGACGCGTAGTAGTGACTTCTTCTATTTCCGCCATGATTCCGAACCCTAACTGGCCGGCGAATGTTGTAAGGAATGAAGAATGCTGGACCGATATTGATTACTGCAAGAAAAAGGGGCTGTGGTATTCAGTTTCAAAAACTCTAGCAGAAAAGGCTGCTTGGGATTTTGCCAAGGAGAAAGGATTGGATGTGGTGGTGATTAATCCAGGCACAGTGATGGGCCCTGTGTTTACTCCCAGAATTAATGCAAGCATGCAAATGCTTTTAAAACTTCTCGAGGGGTGCAGTGAGACTTTTGAGGACGTTTTTATCGGAGTAGTGCACTTTAAAGATGTTGCATTAGCACACATTTTGGTCTATGAAAACAAATCAGCTGCAGGAAGACACTTCTGTGCTGAAGCCATAGCTCGTTACTCTGACTATGTAGCGAAGGCTGCTGAACTCTTCCCTCAGTATAAGGTGCCCAGATCGATAGAAGATACACAACCTGATTTGGTGAGAGCAAAAGATGGAGCTAAGAAGTTGATGAATCTGGGGCTGGAATTTACCCCAATGGAAGAAATCCTCAAGGACGCTGTTGAGGATCTAAAAAAGAAGGGATATATTTCCTGA 1044 48.18 MSTTQKPEQLVCVTGGSGCIGSWLVHLLLLRGYSVHATVQNLSYTPTFIPIFLQLPLYSFQTSEDERETKHLEDLEGAEARLRLFQIDLLDYDSIVPAVTGCAGVFHVASPCIVDPVDDPERDLLDPAIKGTINVLTAAKEAGVRRVVVTSSISAMIPNPNWPANVVRNEECWTDIDYCKKKGLWYSVSKTLAEKAAWDFAKEKGLDVVVINPGTVMGPVFTPRINASMQMLLKLLEGCSETFEDVFIGVVHFKDVALAHILVYENKSAAGRHFCAEAIARYSDYVAKAAELFPQYKVPRSIEDTQPDLVRAKDGAKKLMNLGLEFTPMEEILKDAVEDLKKKGYIS 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16202906 16205872 + Lsi02G012340.1 Lsi02g01234 655976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01234 347 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Lsi02g01234 347 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 9 43 - -
Lsi02g01234 347 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 60 338 - -
Lsi02g01234 347 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 341 IPR036291 -
Lsi02g01234 347 Gene3D - 2 347 - -
Lsi02g01234 347 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 9 43 - -
Lsi02g01234 347 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 60 338 - -
Lsi02g01234 347 Pfam NAD dependent epimerase/dehydratase family 11 273 IPR001509 -
Lsi02g01234 347 CDD FR_SDR_e 11 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01234 Lsi-Chr2:16202906 Lsi05g00774 Lsi-Chr5:11002724 4.89E-106 dispersed
Lsi02g01234 Lsi-Chr2:16202906 Lsi03g01266 Lsi-Chr3:23357447 6.31E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01234 - - csv:101204420 598.971