Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g01269 | ATGGCGAAAACGACGGCGCTTTCGTGGACGCGAAGTAACTCTGTCATCGGAAAGGGCTCCTTTGGAACTGTGACTGTCGGAATCGGGAAATCCGACGGTCGGATTTTTGCGGTGAAATCTGTGGAACAGAGTAATGGATTCCGGCGACAAATTGAGTGTTTAGACAACGAAATTCGGATTCTCCGATCGTTGAATTCGCCTTACGTTGTAGGTTTTCTTGGCGATGATGTTTCCGACGAGTCTCCCACGACGTCGTTTCGAAACCTCCACATGGAGTATTTGCCAGGTGGCACAGTCGCCGACGACCCCACTGGCGCCGGTGATGAGAAGCTTTTACGAGAGAGGACATGGTGCCTCGTTTCGGCTTTGAGTTACATTCATTCGAAAGGAATTGTTCATTGTGATGTTAAAGGGAGGAACATTTTGATCGGATTGAATCCTGGGGTTGTGAAATTGGCTGATTTCGGCTCTGCAATTGAATTTTCCGGCGCCGGTGACAGGTGTCGGGGTTCGATTGCGCCACGTGGGAGTCCACTGTGGATGGCGCCGGAGGTGGTCCGGGGGGAATTTCAGGGGCCGGAATCGGACGTTTGGTCCGTTGGGTGCACGGTCATTGAAATGGTCACCGGAAAACCGGCGTGGGAAGATTTTGGGGCCGATACGCTGAGTCGAATCGGATTTTCGGACGATTTGCCGGAGTTTCCATCACGGTTGTCAGAAGTCGGCCGCGATTTTCTCCGAAAGTGTCTCAGAAGAAATCCTAGTGAACGGTGGAGCTGTGATCGGCTGCTGCAGCATCCATTTCTGGCGGCGGCGGCCTCGCCGGAGATTGCCGTAGATAATTCCCCCAGGTGTGTGCTTGACTGGGTCAACGGCAATTTCTCCGACGACGAGGAGGAAATTCCGATCGCCGACGAAACCTCCGGCTTTGGCGGGCAGGAAAGTGAGATCTCTGCTAAGGAAAGAATTGGGAAATTGAGTACAAGTGAATGGCCAAACTGGCAATCGGACGGTTGGTCGCCGGTGAGAAGGTGTTGCAGTGAAGCGGCGGCGGAGACGGAGGCGAGCTGTCGGAAAGAAGAAGAAGAGGGAGGGGCAGAATGGGAATATGGGAATTTGAGAAGGGTAGAAGGGGGAATGGAGGGGACAAGTTCGGAATATTCGGAGTTTGTAACAGACAATCACGGAAAATTGGGTGCCGAATATTCAAATCCTGGCGGTAAGAAAATTCCGGAGTGGCCACGTAATAATTACGGCGGCGGTGACAGTGACGGTGGCGGTAGCGGTGGATTAAGTTTCCGGCGGTGGGGGTTTGAAAGATATGAAATTACAACGATAACCTCGTGGATATATTCAATTGAATTGATATTATGTTATTATTGGAAAATATTAATGAAGCAATTGGTGTTATTTGGGAATTACACTTTATTACCTTTCTTTTGTGCCTAA | 1449 | 50.66 | MAKTTALSWTRSNSVIGKGSFGTVTVGIGKSDGRIFAVKSVEQSNGFRRQIECLDNEIRILRSLNSPYVVGFLGDDVSDESPTTSFRNLHMEYLPGGTVADDPTGAGDEKLLRERTWCLVSALSYIHSKGIVHCDVKGRNILIGLNPGVVKLADFGSAIEFSGAGDRCRGSIAPRGSPLWMAPEVVRGEFQGPESDVWSVGCTVIEMVTGKPAWEDFGADTLSRIGFSDDLPEFPSRLSEVGRDFLRKCLRRNPSERWSCDRLLQHPFLAAAASPEIAVDNSPRCVLDWVNGNFSDDEEEIPIADETSGFGGQESEISAKERIGKLSTSEWPNWQSDGWSPVRRCCSEAAAETEASCRKEEEEGGAEWEYGNLRRVEGGMEGTSSEYSEFVTDNHGKLGAEYSNPGGKKIPEWPRNNYGGGDSDGGGSGGLSFRRWGFERYEITTITSWIYSIELILCYYWKILMKQLVLFGNYTLLPFFCA | 482 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 16870314 | 16871762 | - | Lsi02G012690.1 | Lsi02g01269 | 656011 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g01269 | 482 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 | 4 | 366 | - | - | |
Lsi02g01269 | 482 | CDD | STKc_MAPKKK | 8 | 269 | - | - | |
Lsi02g01269 | 482 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 131 | 143 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi02g01269 | 482 | SMART | serkin_6 | 10 | 269 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi02g01269 | 482 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 4 | 366 | - | - | |
Lsi02g01269 | 482 | ProSiteProfiles | Protein kinase domain profile. | 10 | 269 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi02g01269 | 482 | Gene3D | Transferase(Phosphotransferase) domain 1 | 4 | 301 | - | - | |
Lsi02g01269 | 482 | SUPERFAMILY | Protein kinase-like (PK-like) | 14 | 280 | IPR011009 | - | |
Lsi02g01269 | 482 | ProSitePatterns | Protein kinases ATP-binding region signature. | 16 | 39 | IPR017441 | GO:0005524 | |
Lsi02g01269 | 482 | Pfam | Protein kinase domain | 13 | 269 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01269 | Lsi-Chr2:16870314 | Lsi11g01440 | Lsi-Chr11:22938320 | 5.35E-64 | dispersed | |
Lsi02g01269 | Lsi-Chr2:16870314 | Lsi10g00114 | Lsi-Chr10:1804629 | 7.41E-66 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83399 | PF00069 | Pkinase | 9.20E-53 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g01269 | - | - | cmo:103497226 | 821.231 |