Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01269 ATGGCGAAAACGACGGCGCTTTCGTGGACGCGAAGTAACTCTGTCATCGGAAAGGGCTCCTTTGGAACTGTGACTGTCGGAATCGGGAAATCCGACGGTCGGATTTTTGCGGTGAAATCTGTGGAACAGAGTAATGGATTCCGGCGACAAATTGAGTGTTTAGACAACGAAATTCGGATTCTCCGATCGTTGAATTCGCCTTACGTTGTAGGTTTTCTTGGCGATGATGTTTCCGACGAGTCTCCCACGACGTCGTTTCGAAACCTCCACATGGAGTATTTGCCAGGTGGCACAGTCGCCGACGACCCCACTGGCGCCGGTGATGAGAAGCTTTTACGAGAGAGGACATGGTGCCTCGTTTCGGCTTTGAGTTACATTCATTCGAAAGGAATTGTTCATTGTGATGTTAAAGGGAGGAACATTTTGATCGGATTGAATCCTGGGGTTGTGAAATTGGCTGATTTCGGCTCTGCAATTGAATTTTCCGGCGCCGGTGACAGGTGTCGGGGTTCGATTGCGCCACGTGGGAGTCCACTGTGGATGGCGCCGGAGGTGGTCCGGGGGGAATTTCAGGGGCCGGAATCGGACGTTTGGTCCGTTGGGTGCACGGTCATTGAAATGGTCACCGGAAAACCGGCGTGGGAAGATTTTGGGGCCGATACGCTGAGTCGAATCGGATTTTCGGACGATTTGCCGGAGTTTCCATCACGGTTGTCAGAAGTCGGCCGCGATTTTCTCCGAAAGTGTCTCAGAAGAAATCCTAGTGAACGGTGGAGCTGTGATCGGCTGCTGCAGCATCCATTTCTGGCGGCGGCGGCCTCGCCGGAGATTGCCGTAGATAATTCCCCCAGGTGTGTGCTTGACTGGGTCAACGGCAATTTCTCCGACGACGAGGAGGAAATTCCGATCGCCGACGAAACCTCCGGCTTTGGCGGGCAGGAAAGTGAGATCTCTGCTAAGGAAAGAATTGGGAAATTGAGTACAAGTGAATGGCCAAACTGGCAATCGGACGGTTGGTCGCCGGTGAGAAGGTGTTGCAGTGAAGCGGCGGCGGAGACGGAGGCGAGCTGTCGGAAAGAAGAAGAAGAGGGAGGGGCAGAATGGGAATATGGGAATTTGAGAAGGGTAGAAGGGGGAATGGAGGGGACAAGTTCGGAATATTCGGAGTTTGTAACAGACAATCACGGAAAATTGGGTGCCGAATATTCAAATCCTGGCGGTAAGAAAATTCCGGAGTGGCCACGTAATAATTACGGCGGCGGTGACAGTGACGGTGGCGGTAGCGGTGGATTAAGTTTCCGGCGGTGGGGGTTTGAAAGATATGAAATTACAACGATAACCTCGTGGATATATTCAATTGAATTGATATTATGTTATTATTGGAAAATATTAATGAAGCAATTGGTGTTATTTGGGAATTACACTTTATTACCTTTCTTTTGTGCCTAA 1449 50.66 MAKTTALSWTRSNSVIGKGSFGTVTVGIGKSDGRIFAVKSVEQSNGFRRQIECLDNEIRILRSLNSPYVVGFLGDDVSDESPTTSFRNLHMEYLPGGTVADDPTGAGDEKLLRERTWCLVSALSYIHSKGIVHCDVKGRNILIGLNPGVVKLADFGSAIEFSGAGDRCRGSIAPRGSPLWMAPEVVRGEFQGPESDVWSVGCTVIEMVTGKPAWEDFGADTLSRIGFSDDLPEFPSRLSEVGRDFLRKCLRRNPSERWSCDRLLQHPFLAAAASPEIAVDNSPRCVLDWVNGNFSDDEEEIPIADETSGFGGQESEISAKERIGKLSTSEWPNWQSDGWSPVRRCCSEAAAETEASCRKEEEEGGAEWEYGNLRRVEGGMEGTSSEYSEFVTDNHGKLGAEYSNPGGKKIPEWPRNNYGGGDSDGGGSGGLSFRRWGFERYEITTITSWIYSIELILCYYWKILMKQLVLFGNYTLLPFFCA 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16870314 16871762 - Lsi02G012690.1 Lsi02g01269 656011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01269 482 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 4 366 - -
Lsi02g01269 482 CDD STKc_MAPKKK 8 269 - -
Lsi02g01269 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Lsi02g01269 482 SMART serkin_6 10 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01269 482 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 366 - -
Lsi02g01269 482 ProSiteProfiles Protein kinase domain profile. 10 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01269 482 Gene3D Transferase(Phosphotransferase) domain 1 4 301 - -
Lsi02g01269 482 SUPERFAMILY Protein kinase-like (PK-like) 14 280 IPR011009 -
Lsi02g01269 482 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Lsi02g01269 482 Pfam Protein kinase domain 13 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01269 Lsi-Chr2:16870314 Lsi11g01440 Lsi-Chr11:22938320 5.35E-64 dispersed
Lsi02g01269 Lsi-Chr2:16870314 Lsi10g00114 Lsi-Chr10:1804629 7.41E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83399 PF00069 Pkinase 9.20E-53 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01269 - - cmo:103497226 821.231