Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01270 ATGTCTGTCTCCGTTGCGGTTTCGAATTCGCCGGGATTTTCCCCTTCATCCATGTTCTGCAACAAGACGTCGATCATTTCTCCGGCACCGGAGGCACTGACGCTTACTTTAGCTCATTTAAAGTCGTCGCAGGCTTCGTCGTCTTGCTGTTCTTCGCCTTCTTCGCCTTCTTCCCCTTTTCGGATTAGGTTTCCCAAGCCCCCTTCTGGGCTTTCGGCGGCGGCAGCAGCGGTGGCCGTGGCTTCCACTTCTTCTCCTTCGTCAGCGTCGTCGAGCGCGATCTTGAAGAGGAAAAGACCCGCTAGGTTGGATATTCCGTTGACGCCGTTGAGTTTTGGGGCTCCGGTGATGCCGTCACCGTCGTCGTTCAGGGAGGTGGTGGAGGCCGAGAGAGATGGGTATTCTGTGTATTGTAAGAGAGGGAGGAGGAGAATTGCTATGGAAGATCGGTATTCTGCCGCTGTTGATCTTCGTGGAAATTCTAAAGAGGCGTTTTTTGGTGTATTTGATGGACATGGAGGTGCTAAGGCTGCAGAATTTGCAGCAAATAACTTAGAGAAGAACGTTTTGAAAGAAATTGAAAGAATGGCTGATAATGAAACTGATTTTGAACAAGCCATTAAACATGGCTACCTCACCACAGATTCTGATTTCCTCAAGGAGGATCAACGTGGTGGTTCATGTTGTGTAACAGCCTTGATCAAGAAAGGCAACCTTGTTATCTCCAACGCCGGTGACTGTCGTGCCGTTCTCAGCAACCAGGGTGTTGCCGAGGCCATCACCTCCGACCACCGCCCGTCCCAGGAAGACGAAAGGCACCGGATCGAGTCCACGGGTGGATATGTTGATTTGTGCAATGGCATTTGGAGAGTCCAGGGATCTCTTGCTGTAACAAGATCAATTGGGGATGCTCACCTCAAACAATGGGTGATAGCAGAGCCAGAGACGAGGGCAATTCGACTCGAGCCTCGACACGAGTTCTTGATCTTGGCCTCAGACGGATTATGGGAAACGGTGAGCAATCAAGAAGCAGTGGACATTGCACATCCATTATGTGTAGGGATTGAGAAGGCAGAGCCATTGATGGCCTGTAAAAAGCTTGTGGAGCTCTCAGTTTCAAGAGGTTCAGTTGATGACATTAGTGTAGTATTGATTCAATTGGCTAACTTCATCTAA 1176 49.74 MSVSVAVSNSPGFSPSSMFCNKTSIISPAPEALTLTLAHLKSSQASSSCCSSPSSPSSPFRIRFPKPPSGLSAAAAAVAVASTSSPSSASSSAILKRKRPARLDIPLTPLSFGAPVMPSPSSFREVVEAERDGYSVYCKRGRRRIAMEDRYSAAVDLRGNSKEAFFGVFDGHGGAKAAEFAANNLEKNVLKEIERMADNETDFEQAIKHGYLTTDSDFLKEDQRGGSCCVTALIKKGNLVISNAGDCRAVLSNQGVAEAITSDHRPSQEDERHRIESTGGYVDLCNGIWRVQGSLAVTRSIGDAHLKQWVIAEPETRAIRLEPRHEFLILASDGLWETVSNQEAVDIAHPLCVGIEKAEPLMACKKLVELSVSRGSVDDISVVLIQLANFI 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16896971 16898489 - Lsi02G012700.1 Lsi02g01270 656012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01270 391 ProSiteProfiles PPM-type phosphatase domain profile. 133 387 IPR001932 -
Lsi02g01270 391 ProSitePatterns PPM-type phosphatase domain signature. 165 173 IPR000222 GO:0043169
Lsi02g01270 391 Pfam Protein phosphatase 2C 139 380 IPR001932 -
Lsi02g01270 391 SMART PP2C_4 126 385 IPR001932 -
Lsi02g01270 391 PANTHER PROTEIN PHOSPHATASE 2C 3 390 IPR015655 GO:0004722|GO:0006470
Lsi02g01270 391 SUPERFAMILY PP2C-like 133 388 IPR036457 -
Lsi02g01270 391 Gene3D - 134 390 IPR036457 -
Lsi02g01270 391 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 390 - -
Lsi02g01270 391 SMART PP2C_SIG_2 152 387 IPR001932 -
Lsi02g01270 391 CDD PP2Cc 133 387 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01270 Lsi-Chr2:16896971 Lsi04g01092 Lsi-Chr4:13144851 1.75E-122 dispersed
Lsi06g00071 Lsi-Chr6:628499 Lsi02g01270 Lsi-Chr2:16896971 3.30E-27 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01270 K17506 - csv:101207841 658.677