Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01298 ATGGCCAACGACGTCGTTTTCGCCTTCCCTTGTTTTTTCTTCGTTCTCATTCTCACCTATTTCATTTGGTTCCATTTCCTCGCCCGTAAGCTCACCGGTCCACCCGTATGGCCACTCATCGGCAGCCTTCCGGCTCTCATCTCGAACCAGCGGCGACTCCACGACTGGATGGCTGGAAACCTCCGCGCCACAGGCGGCGCCGCCACTTACCAAACCTGCACGGTGGCGCTTCCATTCATAGCTAAAAAACAAGGATTTTACACGGTCACGTGCCACCCGAGAAACATCGAGCACGTGCTCCGAACCCGGTTCGAAAATTACCCGAAAGGACCGGACTGGCAAGCGGCTTTTCACGATTTATTAGGGCAAGGGATTTTCAACAGCGACGGAGAAATTTGGCTAATTCAACGGAAGACGGCGGCGCTTGAGTTCACGACGAGGACGCTCCGGCAGGCAATGGACCGGTGGGTGAATCGGACGATACGAACGCGACTGTGGTGTATATTGGAGAAGGCGGCGGAGTACAAAACGGCGGTGGATTTGCAGGATTTGTTGCTCCGATTAACATTTGATAATATTTGTGGGCTGACTTTTGGGAAAGATCCACAAACTTTGTCGCCGGAATTGCCTGCAAATCCCTTCGCTTTGGCATTTGATACCGCCACTGAGGCCACTCTTCAGCGCCTTCTTTACCCTGGTCTTTTATGGAGGTTGGAGAAGTTTTTGGGCATTGGAATGGAAAGAAGGTTGAAGAAGAGTTTGAAAGTAGTAGAAGAATACATAAACGACGCCGTTGCAGCCCGTAAAGAGTCCCCCTCCGACGACTTATTATCACGCTTCATGAAGAAGCGCGACGGCGACCGCTTCTCCACCACCGTCCTCCACCGCATCGCATTAAACTTCGTCCTCGCCGGCCGAGACACCTCCTCCGTGGCTCTCACCTGGTTCTTTTGGCTCGTAATGAACCACCCACACGTCGAGGAAAAAATCCTCTCCGAAATCTCAACGGTCCTCCGCCAGACACGTGGCGACGATCCACGCCGTTGGATCGAAGAGCCGTTAGTATTCGACGAAGCCGACAAATTGGTGTACTTAAAAGCCGCGTTGGCCGAAACGCTGCGGTTATACCCTTCCGTACCACAGGATTTCAAGTATGTCGTGGCTGATGACGTGTTGCCGGATGGCACTTTTGTGCCAGCTGGTTCGACCGTGACGTATTCGATTTATTCGGTCGGGAGGATGAAGAGCATTTGGGGGGATGATTGTGGGGAGTTTAAACCGGACCGATGGTTGTCTCCCACCGGGGACCGGTTCGAGGGGCCAAAGGATGCCTATAAATTTGTGGCGTTTAATGCTGGACCGAGGACTTGTTTGGGGAAGGATTTGGCTTATTTGCAAATGAAGTCCGTTGCCTCCGCCGTACTCCTCCGGTACCGGCTAGCGCCGGTTCCCGGTCACCGGGTGGAACAGAAAATGTCTCTTACTCTGTTTATGAAGAATGGGCTTCGTGTTTATTTGCATCCTCGCCGGCTTGCATAG 1539 52.89 MANDVVFAFPCFFFVLILTYFIWFHFLARKLTGPPVWPLIGSLPALISNQRRLHDWMAGNLRATGGAATYQTCTVALPFIAKKQGFYTVTCHPRNIEHVLRTRFENYPKGPDWQAAFHDLLGQGIFNSDGEIWLIQRKTAALEFTTRTLRQAMDRWVNRTIRTRLWCILEKAAEYKTAVDLQDLLLRLTFDNICGLTFGKDPQTLSPELPANPFALAFDTATEATLQRLLYPGLLWRLEKFLGIGMERRLKKSLKVVEEYINDAVAARKESPSDDLLSRFMKKRDGDRFSTTVLHRIALNFVLAGRDTSSVALTWFFWLVMNHPHVEEKILSEISTVLRQTRGDDPRRWIEEPLVFDEADKLVYLKAALAETLRLYPSVPQDFKYVVADDVLPDGTFVPAGSTVTYSIYSVGRMKSIWGDDCGEFKPDRWLSPTGDRFEGPKDAYKFVAFNAGPRTCLGKDLAYLQMKSVASAVLLRYRLAPVPGHRVEQKMSLTLFMKNGLRVYLHPRRLA 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17334962 17338336 - Lsi02G012980.1 Lsi02g01298 656040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01298 512 SUPERFAMILY Cytochrome P450 22 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01298 512 Pfam Cytochrome P450 88 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01298 512 PANTHER CYTOCHROME P450 14 510 - -
Lsi02g01298 512 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 450 459 IPR017972 GO:0005506|GO:0016705
Lsi02g01298 512 PANTHER CYTOCHROME P450 FAMILY-DEPENDENT FATTY ACID HYDROXYLASE 14 510 - -
Lsi02g01298 512 PRINTS P450 superfamily signature 367 378 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01298 512 PRINTS P450 superfamily signature 457 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01298 512 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01298 512 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01298 512 Gene3D Cytochrome P450 27 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01298 512 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01298 512 PRINTS E-class P450 group I signature 366 384 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01298 512 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01298 512 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01298 512 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01298 Lsi-Chr2:17334962 Lsi09g01572 Lsi-Chr9:23852959 0 dispersed
Lsi02g01298 Lsi-Chr2:17334962 Lsi09g00245 Lsi-Chr9:2581643 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01298 K15401 - csv:101214516 994.571