Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01330 ATGGAGGAGGAGAAAGTGCCCATTTTGATAACAGAACATTGGCATGAAGTGAAAATGCCAATAGTTGCTAAGAAGAGGAATGTTTCTATTCCCAATTCCCCAGGGCAAGAAGTAAAATGTTGCAGTTCTGGCTGTGCTTTTTCCAGATTGGAACATAGTAATTTGGAGTCATTAAAACGTTCCAAATCAGCTATGAAGCTTGGTGGATTGATATTTTTTTATACCATAGCTATAGTAGTAGAGATTATTGGTGGTTTGAGAGCTAACAGTCTTGCTGTAATGACAGATGCAGCTCACTTGCTCAGTGATGTTGCTGGTTTCTCTGTTTCCCTCTTTGCAGTTTGGGTTTCGGGCTGGGAGGCGACACCACAATACTCGTTCGGGTATAACCGTCTTGAAGTTTTAGGTGCTCTTGTATCTGTACAGCTTATATGGCTGATTTCTGGGGTCTTAATCTACGAGGTGATCGACCGGATTCTTGGCCAAAAGACTAAGGTGGATGGTTTCCTTATGTTTTCCATTGCAGCTTTTGGATTCGTTCTTAATTTGTTTATGGTCATGTGGCTTGGCCATAGCCACCACTCTCATTCATCTCATTGTTGTCATCATCATCATGATAATCACTCTCACTCTCATCAAAATCACTTGGATCATGAGTCTGACGATGAGGAGGAGATTTACACAACAACCAAACAAGAGGATGCTTCTTTGGGGTCAAAGGACAATAGTTCAATGAACATTAATCTCCAAGGTGCTTATCTTCATGTCATTACTGATATGATTCAATCTATTGGTGTGATGATTGCTGGAGTCATTCTATGGTTTAAACCCGACTGGATTATCGTCGATTTAATCTGCACTCTTGTGTTTTCTGTTCTTGCTTTAGCTACTACTTTCTCCATGCTTAGACATATAGCTGGTATATTGATGGAAGAAACACCTAGGGAGGTCAATATTGAGAACCTAGAAAATGACCTCAAGAACATAAAAGGAGTCCATTATTTGCATGACTTGCACATTTGGTCCATAACGGTCGGAAAAGTCGTGTTGTCGTGCCATGTTATCGCCGAACCCGGAGTTTGTTCTAGGGAGCTAATTTTGAAGATTAGAAGCCTTTGTGAAAAGAGATATAATATAGTTCATACCACCATACAAGTTGAGTAG 1164 40.38 MEEEKVPILITEHWHEVKMPIVAKKRNVSIPNSPGQEVKCCSSGCAFSRLEHSNLESLKRSKSAMKLGGLIFFYTIAIVVEIIGGLRANSLAVMTDAAHLLSDVAGFSVSLFAVWVSGWEATPQYSFGYNRLEVLGALVSVQLIWLISGVLIYEVIDRILGQKTKVDGFLMFSIAAFGFVLNLFMVMWLGHSHHSHSSHCCHHHHDNHSHSHQNHLDHESDDEEEIYTTTKQEDASLGSKDNSSMNINLQGAYLHVITDMIQSIGVMIAGVILWFKPDWIIVDLICTLVFSVLALATTFSMLRHIAGILMEETPREVNIENLENDLKNIKGVHYLHDLHIWSITVGKVVLSCHVIAEPGVCSRELILKIRSLCEKRYNIVHTTIQVE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17784826 17785989 - Lsi02G013300.1 Lsi02g01330 656072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01330 387 TIGRFAM CDF: cation diffusion facilitator family transporter 71 387 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Lsi02g01330 387 MobiDBLite consensus disorder prediction 210 239 - -
Lsi02g01330 387 Gene3D Cation efflux protein transmembrane domain 67 309 IPR027469 -
Lsi02g01330 387 SUPERFAMILY Cation efflux protein transmembrane domain-like 67 311 IPR027469 -
Lsi02g01330 387 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 316 387 IPR036837 -
Lsi02g01330 387 MobiDBLite consensus disorder prediction 210 225 - -
Lsi02g01330 387 Pfam Cation efflux family 71 310 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Lsi02g01330 387 PANTHER METAL TOLERANCE PROTEIN B 1 387 - -
Lsi02g01330 387 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 1 387 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01330 Lsi-Chr2:17784826 Lsi09g01853 Lsi-Chr9:27341325 3.19E-102 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01330 K14689 - csv:116403740 625.165