Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi02g01331 | ATGGCGGAGATTTGCTGTAAAGTGATGAGTGAGAGTGAGGCGTCGTCGTCCTGCGAGCCGAGCTCGCGAGTGGCTAGACGTCGGAGAATGGAGATCAGGAGGTGTAAATTTGTCGCCGGAGTTGCTCCGTCGGAGACAGAGACTGTTGCGAAGAGGCAGAAGTTGGAGGATCGAGCTACGTCGATATCAAGAGACTGTGATAACGCAATCCAGAATTGTGATTCGGGAGAAGAAGAAACCGTCGGGAGATTTGTGGCCGGAGAGGTTTCGACGAAGGAGGTATCGACTCCTCTGTCTAGGGAATCTCCCCATGGCGATGTGATTCCGAAGTTCGGATTCTCTTCTGTTTGTGGAAGGCGGAGAGATATGGAGGATGCGGTGGCGGTTCATTCATCGCTTTGTTTGACGGACAAGAAAGCCACCGATATGTTGCACTTCTTCGGTGTTTACGATGGCCATGGCTGCTCTCATGTGGCGATGAGGTGTAAGGAGCGGCTGCATGAACTGGTAAAAGATGAGCTGGATAGGGAAGAGAAGTTGGACGCTACTGCGGCGGCGGAGGGAGAGGCGGAGGCGTCGCGGTGGGACCGTGCTATGAAGAGAATCTTCTGGAGAATGGACAACGAAGTTGTGGCGCGAAACAATGAAGAAGAAGTGGTTGCGAACTGTAGATGCGAACTTCAGTCGCCGGATTGCGATGCCGTCGGATCTACCGCCGTCGTCGCAATTGTGACGCCGGATAAGATCATCGTCGCCAACTGCGGCGATTCCAGAGCCGTTCTCTGCCGTAACGGGAAGGCCATCCCTCTCTCTTCCGATCACAAGCCGGATCGTCTCGACGAACTTAGCCGGATCGAGGAAGCCGGCGGGCGAGTGATTTACTGGGACGGACCGCGTGTTCTCGGAGTTCTCGCCATGTCAAGAGCCATAGGCGATAATTATCTGAAACCGTATGTGATATCGGAGCCGGAGGTGACGATAACGAACCGGACGGCGGAGGATGAGTGCTTGATTCTAGCAAGCGACGGGCTGTGGGATGTGGTGCCGAACGAGACGGCGTGTGGAGTGGCGAGCATGTGCCTTAAGGGGAAAGCGGAGGAGAGGTCTCCAGTGTCGCCGTCGGGGGAGGCGGAGACGGCGGCGGAAGGGGAGGAGCGAGGGAGCGCAGACAAGGCCTGCAACGATGCGTCGATGCTGCTGACGAAGCTGGCGTTGGCCAGGCACAGTACGGACAACGTGAGCGTCGTGGTGGTGGACCTTAAGAGGGACACGTACCCATAG | 1281 | 56.52 | MAEICCKVMSESEASSSCEPSSRVARRRRMEIRRCKFVAGVAPSETETVAKRQKLEDRATSISRDCDNAIQNCDSGEEETVGRFVAGEVSTKEVSTPLSRESPHGDVIPKFGFSSVCGRRRDMEDAVAVHSSLCLTDKKATDMLHFFGVYDGHGCSHVAMRCKERLHELVKDELDREEKLDATAAAEGEAEASRWDRAMKRIFWRMDNEVVARNNEEEVVANCRCELQSPDCDAVGSTAVVAIVTPDKIIVANCGDSRAVLCRNGKAIPLSSDHKPDRLDELSRIEEAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTITNRTAEDECLILASDGLWDVVPNETACGVASMCLKGKAEERSPVSPSGEAETAAEGEERGSADKACNDASMLLTKLALARHSTDNVSVVVVDLKRDTYP | 426 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 17811663 | 17813856 | + | Lsi02G013310.1 | Lsi02g01331 | 656073 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi02g01331 | 426 | ProSiteProfiles | PPM-type phosphatase domain profile. | 110 | 420 | IPR001932 | - | |
| Lsi02g01331 | 426 | Gene3D | - | 99 | 424 | IPR036457 | - | |
| Lsi02g01331 | 426 | MobiDBLite | consensus disorder prediction | 365 | 390 | - | - | |
| Lsi02g01331 | 426 | SUPERFAMILY | PP2C-like | 103 | 421 | IPR036457 | - | |
| Lsi02g01331 | 426 | Coils | Coil | 52 | 72 | - | - | |
| Lsi02g01331 | 426 | PANTHER | PROTEIN PHOSPHATASE 2C 37 | 44 | 423 | - | - | |
| Lsi02g01331 | 426 | SMART | PP2C_4 | 100 | 418 | IPR001932 | - | |
| Lsi02g01331 | 426 | PANTHER | ALPHABET, ISOFORM E-RELATED | 44 | 423 | - | - | |
| Lsi02g01331 | 426 | CDD | PP2Cc | 110 | 420 | IPR001932 | - | |
| Lsi02g01331 | 426 | ProSitePatterns | PPM-type phosphatase domain signature. | 146 | 154 | IPR000222 | GO:0043169 | |
| Lsi02g01331 | 426 | Pfam | Protein phosphatase 2C | 110 | 382 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi02g01331 | Lsi-Chr2:17811663 | Lsi04g01361 | Lsi-Chr4:21361522 | 1.47E-40 | dispersed | |
| Lsi02g02989 | Lsi-Chr2:35976897 | Lsi02g01331 | Lsi-Chr2:17811663 | 3.54E-52 | transposed | |
| Lsi04g01092 | Lsi-Chr4:13144851 | Lsi02g01331 | Lsi-Chr2:17811663 | 5.26E-37 | transposed | |
| Lsi05g00087 | Lsi-Chr5:1595355 | Lsi02g01331 | Lsi-Chr2:17811663 | 3.50E-82 | transposed | |
| Lsi05g00962 | Lsi-Chr5:16780730 | Lsi02g01331 | Lsi-Chr2:17811663 | 1.51E-17 | transposed | |
| Lsi05g01287 | Lsi-Chr5:20670836 | Lsi02g01331 | Lsi-Chr2:17811663 | 3.24E-93 | transposed | |
| Lsi06g00214 | Lsi-Chr6:2441048 | Lsi02g01331 | Lsi-Chr2:17811663 | 3.46E-61 | transposed | |
| Lsi07g00587 | Lsi-Chr7:6239778 | Lsi02g01331 | Lsi-Chr2:17811663 | 1.85E-75 | transposed | |
| Lsi08g00511 | Lsi-Chr8:13025417 | Lsi02g01331 | Lsi-Chr2:17811663 | 9.14E-33 | transposed | |
| Lsi08g00854 | Lsi-Chr8:16959074 | Lsi02g01331 | Lsi-Chr2:17811663 | 1.52E-72 | transposed | |
| Lsi02g01331 | Lsi-Chr2:17811663 | Lsi03g00358 | Lsi-Chr3:4227142 | 2.87E-108 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi02g01331 | K14497 | - | csv:101206871 | 731.095 |