Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01341 ATGGGAGAGGAGGTGAAGATGGCTGAATATGAGAGCGGTGGTGGTGGTGACGATGAAAACTGTGCTCATGAGGAGCGGGTATTTGAATGGGAAACGGGTTTGCCTGACGCCGATGATCTCACTCCTCTGTCTCAGACGTTGATTCCGCCGGAGCTTGCATCAGCATTCAGTATATCGACAGGGCCATGTCGGACACTGATGGATGTCAATCGGGCGTCGCAGAATACGCTATCGAATCTTCGTGGATTTCAAGCACAAGCGTTTTCGTCGAATAATTTCAAGTCGTTTAACGATGATCGGACTCGGGATCATGATCCGATGGTGGTTGAAGGAGATGAAGCAACGGAGAGGGATGCAGGGTCTGATTCTAGGAAATTGAGGAAGGTTGATTGTACGGAGGAGGCTGATTCGGCTCTTCGGACGGATAATTCGATGGATGATCCGTCGGCTCGGACTTTGAAGAGACCGAGGCTTGTATGGACGCCGCAATTACACAAGCGGTTTGTGGACGTTGTTGCTCATCTTGGAATTAAGAACGCGGTTCCTAAAACTATTATGCAGTTGATGAATGTGGAGGGATTGACTCGGGAGAATGTTGCGAGTCATCTTCAGAAATATAGGCTTTACTTGAAGAGGATGCAGGGATCTTCCAACGAAGGCCCATCGTCGCCGGACCGGATTTTTGCGTCCACGCCTGTACCGCAGACCTTGCACGAGTCTACCGACAATGGGCATGCCAATGGAAATGGGCATTTGCCAGTTCCAACTCCGATGCCGTATGGACCGCCGATGATGCCTATGCCGGTGCTTGGCATGGCAGCGTCTGGCCATGCACACGGTTATATGGGTATGCCGGTCGCTCATCCAGGAAGCGCACAGGGATACCCTGGTTTTGAAACGCATCCTTTCAATATGATGCATCAGAGAGATTGGTCGGGGAACAAATACGGCTCGATCGTGCCTTACCCTCATCCTCATGTACCTCCTAGTACTAATGATAAGTGA 1005 50.75 MGEEVKMAEYESGGGGDDENCAHEERVFEWETGLPDADDLTPLSQTLIPPELASAFSISTGPCRTLMDVNRASQNTLSNLRGFQAQAFSSNNFKSFNDDRTRDHDPMVVEGDEATERDAGSDSRKLRKVDCTEEADSALRTDNSMDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDRIFASTPVPQTLHESTDNGHANGNGHLPVPTPMPYGPPMMPMPVLGMAASGHAHGYMGMPVAHPGSAQGYPGFETHPFNMMHQRDWSGNKYGSIVPYPHPHVPPSTNDK 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17893153 17894157 - Lsi02G013410.1 Lsi02g01341 656083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01341 334 MobiDBLite consensus disorder prediction 96 123 - -
Lsi02g01341 334 MobiDBLite consensus disorder prediction 93 123 - -
Lsi02g01341 334 SUPERFAMILY Homeodomain-like 152 212 IPR009057 -
Lsi02g01341 334 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 328 - -
Lsi02g01341 334 MobiDBLite consensus disorder prediction 1 20 - -
Lsi02g01341 334 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 328 IPR044841 GO:0003700|GO:0006355
Lsi02g01341 334 Gene3D - 152 214 - -
Lsi02g01341 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 211 IPR017930 -
Lsi02g01341 334 Pfam Myb-like DNA-binding domain 159 207 IPR001005 -
Lsi02g01341 334 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 156 208 IPR006447 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01341 Lsi-Chr2:17893153 Lsi04g02085 Lsi-Chr4:28044292 1.76E-25 dispersed
Lsi03g01637 Lsi-Chr3:27490708 Lsi02g01341 Lsi-Chr2:17893153 8.81E-47 transposed
Lsi10g01395 Lsi-Chr10:18089773 Lsi02g01341 Lsi-Chr2:17893153 2.79E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24822 PF00249 Myb_DNA-binding 1.40E-08 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01341 - - csv:101205712 636.721