Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g01341 | ATGGGAGAGGAGGTGAAGATGGCTGAATATGAGAGCGGTGGTGGTGGTGACGATGAAAACTGTGCTCATGAGGAGCGGGTATTTGAATGGGAAACGGGTTTGCCTGACGCCGATGATCTCACTCCTCTGTCTCAGACGTTGATTCCGCCGGAGCTTGCATCAGCATTCAGTATATCGACAGGGCCATGTCGGACACTGATGGATGTCAATCGGGCGTCGCAGAATACGCTATCGAATCTTCGTGGATTTCAAGCACAAGCGTTTTCGTCGAATAATTTCAAGTCGTTTAACGATGATCGGACTCGGGATCATGATCCGATGGTGGTTGAAGGAGATGAAGCAACGGAGAGGGATGCAGGGTCTGATTCTAGGAAATTGAGGAAGGTTGATTGTACGGAGGAGGCTGATTCGGCTCTTCGGACGGATAATTCGATGGATGATCCGTCGGCTCGGACTTTGAAGAGACCGAGGCTTGTATGGACGCCGCAATTACACAAGCGGTTTGTGGACGTTGTTGCTCATCTTGGAATTAAGAACGCGGTTCCTAAAACTATTATGCAGTTGATGAATGTGGAGGGATTGACTCGGGAGAATGTTGCGAGTCATCTTCAGAAATATAGGCTTTACTTGAAGAGGATGCAGGGATCTTCCAACGAAGGCCCATCGTCGCCGGACCGGATTTTTGCGTCCACGCCTGTACCGCAGACCTTGCACGAGTCTACCGACAATGGGCATGCCAATGGAAATGGGCATTTGCCAGTTCCAACTCCGATGCCGTATGGACCGCCGATGATGCCTATGCCGGTGCTTGGCATGGCAGCGTCTGGCCATGCACACGGTTATATGGGTATGCCGGTCGCTCATCCAGGAAGCGCACAGGGATACCCTGGTTTTGAAACGCATCCTTTCAATATGATGCATCAGAGAGATTGGTCGGGGAACAAATACGGCTCGATCGTGCCTTACCCTCATCCTCATGTACCTCCTAGTACTAATGATAAGTGA | 1005 | 50.75 | MGEEVKMAEYESGGGGDDENCAHEERVFEWETGLPDADDLTPLSQTLIPPELASAFSISTGPCRTLMDVNRASQNTLSNLRGFQAQAFSSNNFKSFNDDRTRDHDPMVVEGDEATERDAGSDSRKLRKVDCTEEADSALRTDNSMDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDRIFASTPVPQTLHESTDNGHANGNGHLPVPTPMPYGPPMMPMPVLGMAASGHAHGYMGMPVAHPGSAQGYPGFETHPFNMMHQRDWSGNKYGSIVPYPHPHVPPSTNDK | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 17893153 | 17894157 | - | Lsi02G013410.1 | Lsi02g01341 | 656083 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g01341 | 334 | MobiDBLite | consensus disorder prediction | 96 | 123 | - | - | |
Lsi02g01341 | 334 | MobiDBLite | consensus disorder prediction | 93 | 123 | - | - | |
Lsi02g01341 | 334 | SUPERFAMILY | Homeodomain-like | 152 | 212 | IPR009057 | - | |
Lsi02g01341 | 334 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 1 | 328 | - | - | |
Lsi02g01341 | 334 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Lsi02g01341 | 334 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 1 | 328 | IPR044841 | GO:0003700|GO:0006355 | |
Lsi02g01341 | 334 | Gene3D | - | 152 | 214 | - | - | |
Lsi02g01341 | 334 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 160 | 211 | IPR017930 | - | |
Lsi02g01341 | 334 | Pfam | Myb-like DNA-binding domain | 159 | 207 | IPR001005 | - | |
Lsi02g01341 | 334 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 156 | 208 | IPR006447 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01341 | Lsi-Chr2:17893153 | Lsi04g02085 | Lsi-Chr4:28044292 | 1.76E-25 | dispersed | |
Lsi03g01637 | Lsi-Chr3:27490708 | Lsi02g01341 | Lsi-Chr2:17893153 | 8.81E-47 | transposed | |
Lsi10g01395 | Lsi-Chr10:18089773 | Lsi02g01341 | Lsi-Chr2:17893153 | 2.79E-80 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24822 | PF00249 | Myb_DNA-binding | 1.40E-08 | CL0123 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g01341 | - | - | csv:101205712 | 636.721 |