Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01341 ATGGGAGAGGAGGTGAAGATGGCTGAATATGAGAGCGGTGGTGGTGGTGACGATGAAAACTGTGCTCATGAGGAGCGGGTATTTGAATGGGAAACGGGTTTGCCTGACGCCGATGATCTCACTCCTCTGTCTCAGACGTTGATTCCGCCGGAGCTTGCATCAGCATTCAGTATATCGACAGGGCCATGTCGGACACTGATGGATGTCAATCGGGCGTCGCAGAATACGCTATCGAATCTTCGTGGATTTCAAGCACAAGCGTTTTCGTCGAATAATTTCAAGTCGTTTAACGATGATCGGACTCGGGATCATGATCCGATGGTGGTTGAAGGAGATGAAGCAACGGAGAGGGATGCAGGGTCTGATTCTAGGAAATTGAGGAAGGTTGATTGTACGGAGGAGGCTGATTCGGCTCTTCGGACGGATAATTCGATGGATGATCCGTCGGCTCGGACTTTGAAGAGACCGAGGCTTGTATGGACGCCGCAATTACACAAGCGGTTTGTGGACGTTGTTGCTCATCTTGGAATTAAGAACGCGGTTCCTAAAACTATTATGCAGTTGATGAATGTGGAGGGATTGACTCGGGAGAATGTTGCGAGTCATCTTCAGAAATATAGGCTTTACTTGAAGAGGATGCAGGGATCTTCCAACGAAGGCCCATCGTCGCCGGACCGGATTTTTGCGTCCACGCCTGTACCGCAGACCTTGCACGAGTCTACCGACAATGGGCATGCCAATGGAAATGGGCATTTGCCAGTTCCAACTCCGATGCCGTATGGACCGCCGATGATGCCTATGCCGGTGCTTGGCATGGCAGCGTCTGGCCATGCACACGGTTATATGGGTATGCCGGTCGCTCATCCAGGAAGCGCACAGGGATACCCTGGTTTTGAAACGCATCCTTTCAATATGATGCATCAGAGAGATTGGTCGGGGAACAAATACGGCTCGATCGTGCCTTACCCTCATCCTCATGTACCTCCTAGTACTAATGATAAGTGA 1005 50.75 MGEEVKMAEYESGGGGDDENCAHEERVFEWETGLPDADDLTPLSQTLIPPELASAFSISTGPCRTLMDVNRASQNTLSNLRGFQAQAFSSNNFKSFNDDRTRDHDPMVVEGDEATERDAGSDSRKLRKVDCTEEADSALRTDNSMDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDRIFASTPVPQTLHESTDNGHANGNGHLPVPTPMPYGPPMMPMPVLGMAASGHAHGYMGMPVAHPGSAQGYPGFETHPFNMMHQRDWSGNKYGSIVPYPHPHVPPSTNDK 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17893153 17894157 - Lsi02G013410.1 Lsi02g01341 656083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01341 334 MobiDBLite consensus disorder prediction 96 123 - -
Lsi02g01341 334 MobiDBLite consensus disorder prediction 93 123 - -
Lsi02g01341 334 SUPERFAMILY Homeodomain-like 152 212 IPR009057 -
Lsi02g01341 334 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 328 - -
Lsi02g01341 334 MobiDBLite consensus disorder prediction 1 20 - -
Lsi02g01341 334 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 328 IPR044841 GO:0003700|GO:0006355
Lsi02g01341 334 Gene3D - 152 214 - -
Lsi02g01341 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 211 IPR017930 -
Lsi02g01341 334 Pfam Myb-like DNA-binding domain 159 207 IPR001005 -
Lsi02g01341 334 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 156 208 IPR006447 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01341 - - - csv:101205712 636.721
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01341 Lsi-Chr2:17893153 Lsi04g02085 Lsi-Chr4:28044292 1.76E-25 dispersed
Lsi03g01637 Lsi-Chr3:27490708 Lsi02g01341 Lsi-Chr2:17893153 8.81E-47 transposed
Lsi10g01395 Lsi-Chr10:18089773 Lsi02g01341 Lsi-Chr2:17893153 2.79E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g486 . . . Bda09g01515 . . . . Cmo13g00108 . Cma01g00619 Cma13g00110 Car01g00563 Car13g00081 Sed14g0045 . Cpe20g00834 Bhi08g00576 Tan01g2411 Cmetu12g0038 . Hepe10g1262 . Lcy11g0162 Cla02g01948 Cam02g2065 Cec02g2102 Cco02g2133 Clacu02g2052 Cmu02g1993 Cre02g2302 Cone3ag0500 Cone10ag0471 . . Lsi02g01341 Csa06g01467 Chy11g01210 Cme11g01332 Blo13g01068 . . . Bpe08g00093 . Bma07g00088 . Sed01g0847 Cmo02g00786 Cmo20g00418 Cma02g00786 . Car02g00565 Car20g00334 . . Bhi10g00739 Tan05g0421 Cmetu11g1564 . Hepe10g1262 . . Cla03g00126 Cam03g0128 Cec03g0127 Cco03g0134 Clacu03g0131 Cmu03g0752 Cre03g0444 . Csa01g02442 Chy12g00223 Cme12g00152
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g01838 . 7 266 G2-like Transcription Factor Family AT3G24120 58.1 8.2e-68 254.2
Lsi11g01586 . 16 173 G2-like Transcription Factor Family AT3G24120 63.0 4.1e-43 172.2
Lsi10g01509 . 22 167 G2-like Transcription Factor Family AT3G24120 56.6 3.4e-37 152.5
Lsi01g00519 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Lsi04g00286 . 19 257 G2-like Transcription Factor Family AT1G25550 54.9 6.3e-54 208.0
Lsi08g00393 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 3.8e-51 198.7
Lsi02g01341 . 1 269 G2-like Transcription Factor Family AT3G46640 52.2 1.5e-62 236.9
Lsi03g01637 . 1 286 G2-like Transcription Factor Family AT5G05090 55.6 7.9e-70 260.8
Lsi05g01838 . 7 314 G2-like Transcription Factor Family AT4G13640 53.6 6.1e-55 211.5
Lsi05g01838 . 7 266 G2-like Transcription Factor Family AT3G24120 58.1 8.2e-68 254.2
Lsi11g01586 . 16 173 G2-like Transcription Factor Family AT3G24120 63.0 4.1e-43 172.2
Lsi10g01509 . 22 167 G2-like Transcription Factor Family AT3G24120 56.6 3.4e-37 152.5
Lsi01g00519 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Lsi11g01586 . 1 387 G2-like Transcription Factor Family AT1G79430 52.6 2.1e-81 299.7
Lsi10g01509 . 1 166 G2-like Transcription Factor Family AT1G79430 71.0 3.1e-61 232.6
Lsi03g01290 . 70 292 G2-like Transcription Factor Family AT5G18240 53.3 6.4e-50 194.9
Lsi01g00520 . 84 343 G2-like Transcription Factor Family AT2G01060 56.8 2.5e-51 199.1
Lsi03g01637 . 1 286 G2-like Transcription Factor Family AT3G10760 56.9 5.6e-81 298.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001910 1 2 1 1 1 2 4 2 2 2 2 2 4 2 2 3 2 2 3 2 3 2 2 2 1 2 2 6 4 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24822 PF00249 Myb_DNA-binding 1.40E-08 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g01341 Lsi_Chr02 FPKM 6.86227 7.285184 9.198021 9.329253 8.191646 9.035704 10.856806 14.761247 13.648872 16.298378