Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01343 ATGCTTCATCTTCTCTGTTTATTTGGTCTCTTTGTCTTTCTCTTATGTCTTCAATGGCGCCAACCCAAACACAAACTTCTTCCTCCTGGCTCTATGGGTTGGCCTTACATCGGCGAAACTTTTAAACTCTACACCCAAAATCCAAACTCGTTCTTCTCCATTAGGCAAAAAAGATATGGAGATGTTTTTAAGACACATATATTGGGTTGTCCTTGTGTAATGATTTCAAGTCCAAAGGCTGCAAGAGTTGTGCTTGTGAGTAAAGCTCATCTATTCAAGCCAACTTATCCACCAAGCAAAGAGAAAATGATAGGTCCTCAAGCTTTGTTTTTCCATCAAGGTCCTTACCATTCTCACCTTAAGAAGCTCATTCAAGCTTCCTTTTTGCCATCTGCTATAAAAGCCTCTATCTCTCAAATTGAGAACATTGTTCTCCACCTTCTCCCCTCTTGGAATAACTCCCAAATCAACACCTTGCAACAAATGAAAAGGTTTGCTTTTGATGTGGCAATGATATCAGCTTTTGGAGACCAACAAGATTTGGAAATTGAAAGAATCAAACATTTGTACCAATGCCTTGAAAAAGGCTACAATTCTATGCCTCTTGATCTTCCTGGAACTCCTTTCCGCAAAGCAATGAAGGCGAGGAAGGTGCTAAGTGAGACATTGGGGAAATTGATAGAGAAGAGACGGCGGAGCAAAGAGCATGGAGGTGGGTTGCTGGCGGTGCTACTGAGCGGTGGAGGTGGCGACGGTGGAGAGGATGAGAAAAAGAAGCTGAGTGATTCACAAATAGCAGATAATATAATAGGAGTAATATTTGCAGCACAAGACACGACAGCCAGTGTTTTAACATGGATTCTCAAGTATTTACACGACAATCACCATCTTCTTCAAGCTGTTCAGGTGCCACCTAGACCAAACACGTACATGCCATTTGGAAATGGAGTGCACTCGTGTCCAGGCAGTGAGATGGCTAAGCTTGAAATGCTTGTTCTTCTCCACCACCTCACCACCACTTACAGATGGAAAGTAGTGGGAGAGGAATCTGGAATACAATACGGTCCATTTCCTGTACCTAAAGGTGGTTTACCCATAAAAGTATTTTCAAGGAAGAGGAAGATAATTACATCTTAG 1137 42.13 MLHLLCLFGLFVFLLCLQWRQPKHKLLPPGSMGWPYIGETFKLYTQNPNSFFSIRQKRYGDVFKTHILGCPCVMISSPKAARVVLVSKAHLFKPTYPPSKEKMIGPQALFFHQGPYHSHLKKLIQASFLPSAIKASISQIENIVLHLLPSWNNSQINTLQQMKRFAFDVAMISAFGDQQDLEIERIKHLYQCLEKGYNSMPLDLPGTPFRKAMKARKVLSETLGKLIEKRRRSKEHGGGLLAVLLSGGGGDGGEDEKKKLSDSQIADNIIGVIFAAQDTTASVLTWILKYLHDNHHLLQAVQVPPRPNTYMPFGNGVHSCPGSEMAKLEMLVLLHHLTTTYRWKVVGEESGIQYGPFPVPKGGLPIKVFSRKRKIITS 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17923191 17930996 - Lsi02G013430.1 Lsi02g01343 656085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01343 378 PANTHER ABSCISIC ACID 8'-HYDROXYLASE 2 6 302 - -
Lsi02g01343 378 PANTHER ABSCISIC ACID 8'-HYDROXYLASE 2 307 369 - -
Lsi02g01343 378 PANTHER CYTOCHROME P450 26 6 302 - -
Lsi02g01343 378 PANTHER CYTOCHROME P450 26 307 369 - -
Lsi02g01343 378 Pfam Cytochrome P450 308 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01343 378 Pfam Cytochrome P450 28 302 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01343 378 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 313 322 IPR017972 GO:0005506|GO:0016705
Lsi02g01343 378 Gene3D Cytochrome P450 19 301 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01343 378 Gene3D Cytochrome P450 302 371 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01343 378 SUPERFAMILY Cytochrome P450 22 371 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01343 378 PRINTS E-class P450 group I signature 320 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01343 378 PRINTS E-class P450 group I signature 56 75 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g01343 378 PRINTS E-class P450 group I signature 310 320 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01343 Lsi-Chr2:17923191 Lsi08g01473 Lsi-Chr8:22849026 9.91E-26 dispersed
Lsi02g01343 Lsi-Chr2:17923191 Lsi04g01563 Lsi-Chr4:23194296 1.02E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01343 K09843 - csv:101216531 533.872