Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01346 ATGGACAATCTCCTCGAAGATTTTCCCAATTCCTGGAATAATTATCACTTCCATCCCCATCTCTCTAATGGCTTGTTCAAAGTCAATCGCGAAGCCGTTGATCCTCTTCAAATTCCGGCCAAATCACAGCAACATCAACACCAGCTCAGTAATAATTCCTCCTCATCGCCGTCGTCGTCCAGCTCCGAAGGCGACTCGCCGGACAGCCATGACACCTCCAATACCATGCTCAAATACATCACCGAGATGCTGATGGACGAAGGAGAAGATCTCAAAACACAGCCCTGTATGCTTCTCGACTGTTTGGCTCTTCAAGCTGCTGAGAAATCTTTTTATGATGTTCTTGGTCAGAAGTATCCCCCTTCTCCAATCGGAAATGGCGATTCTTCTCAGGATTTCAGCTGTGATAGGGCTGTGAGTAACAACGGTGAAGATGACTCTGAATCTTTATATGGTAACTCCTCTGTTTTTGCCCCTTTTCAAACCTCTCTTTTGAATCAAGATTCGTTTCTTGGGATGCAATTTATTGGGCATTTTAGGCAAGGAGCTGAAGAGGCTAGCAAGTTTCTTCCTGTTAGTGGAAGATTTGGGACCATTGACTTGGATAATGATTCTTCTACCTCTGTTCCTACTAGGGCTGTTGGTTTTTCTTGGGTTGGTGCTGAGAGTGATGGTAGATCCAGCCTTCAAAATGGGTTGTTAAGAGAGAAGAAAAACCGTCTTAGGGAGGATAGTGATGAGGAGTTGAGAAGTAGTAAGCAATCTGCTAATTTTGCTGATGATAATTCACTGTCCGAGTTATTTGATGAGGTTCTTCTTTGTCGGGGTGAAAGTCGGCGGTCCCCGCCGTCGTGTGGTTCGGATGAATCGTCGGAGAGCGAAGCGAATAAGAAGTCGAGAGGTAGAGGGAAAAGGAAAGGGAAGAAGAGTACTCGTTCTAGGAAGCAAGAGAATGGTGTGGAAGTTGTGGATTTGTGGACATTGTTAACTCAATGTGCTCAGGCTGTTTCAAATTATGATCAAAGGACTGCAAATGAGCTGCTCAATCAGATTAGGCATCATTCTAATCCATCTGGGGATGGAAATCAGAGATTAGCTCATTACTTTGCCAAGGGCCTTGAGACTCGCCTTGCCGCCGGTACGCCTCTGTATTTGCCCTTTGCAAGTAATGAAACCTCTGCTGCTGAGATCTTGAAAGCTTATCAGATGTTCATCAAGGCGTGCCCGTTTCGGCGTATGTCGTATTTCTATGCCAATAGAACCATTCTGAAGCTAGCTGAGAAAGTAACAACTCTGCATATTGTTGATTTTGGTATTTTGTATGGTCTCCAATGGCCTTGCTTGATTCAACGGCTCTCGCGCAGACCTGGTGGACCTCCCAAGCTTCGGATCACGGGGATCGAGCTTCCCCAGCCTGGATTTCGCCCTGCTGAACGTGTCGAGCAGACTGGTCGTCGTCTTGCACATTACTGCAAGAGATTCAATGTGCCATTTGAACACAAGGTCTTGGCACGGAAATGGGAAACGGTTCGATATGAGGATCTCAATCTTGATAGAGATGAACTGACTATTGTGACTTGTATGTTCCGAATGAAGAACATACCCGATGAAACGGTGGTCGCAAACAGCCCGAGAGACAGGGTTCTAAAGTTAATCAGGAAAATCAACCCAGATCTCTTCATTCATGAAGTCACCAATGGCTCATTCAATACTCCATTCTTCAACACAAGGTTTAAGGAAGCACTCTTTTACTACTCGTCGTTGTTCGACATGTACGAAGCGACAGTGCCTCGAGACAATCCACAGAGGCATCTTTGTGAGAAGGAAATCCTAGGAAGAGACATCATGAATGTCATAGCATGCGAGGGGCTCGAGAGAGTCGAAAGGCCAGAGACGTACAAGCAATGGCAAGTAAGGAACACGAGGGCCGGGTTCAAACAAGTACCATTAGACCAAAATCTGCTGAAGTGTGTGGAGAAGATAGTGAACACAGAATACCATCAGGACTTCGTGATCGATCAGGATGGGTCGTGGATGTTGCAAGGGTGGAAAGGACGGATCATCGACGCGTTATCGTGTTGGGTAGTTGCCTAA 2094 46.04 MDNLLEDFPNSWNNYHFHPHLSNGLFKVNREAVDPLQIPAKSQQHQHQLSNNSSSSPSSSSSEGDSPDSHDTSNTMLKYITEMLMDEGEDLKTQPCMLLDCLALQAAEKSFYDVLGQKYPPSPIGNGDSSQDFSCDRAVSNNGEDDSESLYGNSSVFAPFQTSLLNQDSFLGMQFIGHFRQGAEEASKFLPVSGRFGTIDLDNDSSTSVPTRAVGFSWVGAESDGRSSLQNGLLREKKNRLREDSDEELRSSKQSANFADDNSLSELFDEVLLCRGESRRSPPSCGSDESSESEANKKSRGRGKRKGKKSTRSRKQENGVEVVDLWTLLTQCAQAVSNYDQRTANELLNQIRHHSNPSGDGNQRLAHYFAKGLETRLAAGTPLYLPFASNETSAAEILKAYQMFIKACPFRRMSYFYANRTILKLAEKVTTLHIVDFGILYGLQWPCLIQRLSRRPGGPPKLRITGIELPQPGFRPAERVEQTGRRLAHYCKRFNVPFEHKVLARKWETVRYEDLNLDRDELTIVTCMFRMKNIPDETVVANSPRDRVLKLIRKINPDLFIHEVTNGSFNTPFFNTRFKEALFYYSSLFDMYEATVPRDNPQRHLCEKEILGRDIMNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQNLLKCVEKIVNTEYHQDFVIDQDGSWMLQGWKGRIIDALSCWVVA 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17994281 17996374 - Lsi02G013460.1 Lsi02g01346 656088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01346 697 MobiDBLite consensus disorder prediction 39 73 - -
Lsi02g01346 697 MobiDBLite consensus disorder prediction 222 256 - -
Lsi02g01346 697 Pfam GRAS domain family 327 694 IPR005202 -
Lsi02g01346 697 MobiDBLite consensus disorder prediction 279 316 - -
Lsi02g01346 697 MobiDBLite consensus disorder prediction 123 147 - -
Lsi02g01346 697 PANTHER SCARECROW-LIKE PROTEIN 30 37 695 - -
Lsi02g01346 697 MobiDBLite consensus disorder prediction 231 254 - -
Lsi02g01346 697 MobiDBLite consensus disorder prediction 122 147 - -
Lsi02g01346 697 ProSiteProfiles GRAS family profile. 316 695 IPR005202 -
Lsi02g01346 697 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 37 695 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01346 Lsi-Chr2:17994281 Lsi10g00057 Lsi-Chr10:977937 1.44E-68 dispersed
Lsi10g01389 Lsi-Chr10:18010515 Lsi02g01346 Lsi-Chr2:17994281 0 wgd
Lsi02g01346 Lsi-Chr2:17994281 Lsi03g02114 Lsi-Chr3:32371065 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24823 PF03514 GRAS 9.60E-115 CL0063 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01346 - - bhj:120083055 1295.41