Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01353 ATGGCTAAAACCGCTATTCTCCTCTGCATTGCGTCTCTGATTTCAACAATGTGGACGGCCGGCGCCAGAATTCCCGGCGTGTACTCCGGCGGCCCATGGGAGAGTGCCCATGCCACGTTCTACGGCGGCTCCGACGCCTCCGGCACAATGGGTGGAGCTTGTGGGTATGGGAATTTGTACAGCCAAGGGTACGGAGTGAACACGGCGGCGTTGAGTACGGCGCTGTTCAACAATGGGCTGAGCTGTGGCGCCTGTTTCGAAATCAAATGTGCTAATGACCCGAGATGGTGCCATTCCGGCAGCCCGTCGATTGTTATTACGGCCACTAATTTCTGTCCGCCGAACTTTGCTTTGCCTAGTGACAATGGCGGATGGTGTAATCCTCCTCGCCTGCATTTCGATCTGGCTATGCCTATGTTTCTTAAGATCGCTGAGTATCGCGCCGGAATCGTCCCCGTTGCCTACCGCCGAGTGCCATGCCGGAAGCCAGGGGGGATCCGGTTCACAATCCACGGGTTCAGATACTTCAACTTGGTTTTAATCACCAACGTGGCGGGTGCAGGGGATATCGTGAAGGTGAGCGTGAAAGGCACGCGCACCGGCTGGATGAGCATGAGCCGTAACTGGGGTCAAAACTGGCAGTCAGACGCCGTGTTAGTGGGCCAGGCCTTGTCTTTTAGAGTCACAGGCAGTGACAGACGGACCTCCACCTCTTTCAACGTGGCGCCATCTGATTGGCAGTTCGGTCAGACCTTCACCGGCAAGAATTTTAGGGTTTGA 780 55.9 MAKTAILLCIASLISTMWTAGARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIVITATNFCPPNFALPSDNGGWCNPPRLHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKPGGIRFTIHGFRYFNLVLITNVAGAGDIVKVSVKGTRTGWMSMSRNWGQNWQSDAVLVGQALSFRVTGSDRRTSTSFNVAPSDWQFGQTFTGKNFRV 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18139244 18141304 + Lsi02G013530.1 Lsi02g01353 656095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01353 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Lsi02g01353 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Lsi02g01353 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Lsi02g01353 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Lsi02g01353 259 PANTHER EXPANSIN-A15 5 258 IPR002963 GO:0009664
Lsi02g01353 259 SMART dpbb_1 68 155 IPR007112 -
Lsi02g01353 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Lsi02g01353 259 Gene3D - 165 257 IPR036749 -
Lsi02g01353 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Lsi02g01353 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Lsi02g01353 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Lsi02g01353 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Lsi02g01353 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Lsi02g01353 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Lsi02g01353 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Lsi02g01353 259 Gene3D - 21 161 IPR036908 -
Lsi02g01353 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Lsi02g01353 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Lsi02g01353 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Lsi02g01353 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Lsi02g01353 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Lsi02g01353 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Lsi02g01353 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Lsi02g01353 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Lsi02g01353 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Lsi02g01353 259 PANTHER EXPANSIN 5 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01287 Lsi-Chr1:11126023 Lsi02g01353 Lsi-Chr2:18139244 2.39E-111 dispersed
Lsi02g01353 Lsi-Chr2:18139244 Lsi04g00406 Lsi-Chr4:3973635 1.26E-126 dispersed
Lsi02g01625 Lsi-Chr2:22146003 Lsi02g01353 Lsi-Chr2:18139244 1.62E-84 dispersed
Lsi11g01308 Lsi-Chr11:21684185 Lsi02g01353 Lsi-Chr2:18139244 7.29E-91 dispersed
Lsi09g00897 Lsi-Chr9:10675872 Lsi02g01353 Lsi-Chr2:18139244 1.12E-90 transposed
Lsi01g01430 Lsi-Chr1:12459638 Lsi02g01353 Lsi-Chr2:18139244 1.77E-63 wgd
Lsi10g01386 Lsi-Chr10:17970338 Lsi02g01353 Lsi-Chr2:18139244 5.81E-172 wgd
Lsi02g01353 Lsi-Chr2:18139244 Lsi04g00889 Lsi-Chr4:8841940 2.50E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01353 - - csv:101206662 528.48