Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01363 ATGGAGACTTTTACGCTTAGATCTGATTTCCAGTGTTTTTCAGCTATGGAGGAAGATAACGGCGCTCTTATTCAGAGTCTGATCGATTTAGTTAATGAGATTGCTTGGATCTCCGATTTTAGGTATACTGTTAAGAAGCAGTATTGTAATTTGTCCAGGAGATTGAAGCTTCTGATCCCAATGTTCGAAGAGATTAGAGACAGTAAAGAGACTGTTTCTGAGGATACACTCAAGGCTCTCGTATTGTTGAAAGAAGCTCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCGAAGGGAGCAAGATTTTCTTGATGACTTTTTCCAATAGATGTTCTTTCTATAATTATACTTTACTTGCCGTAGAGAGGGAGCAAATTATGAACAAATTTCACGAGGTAACTGCTCGGTTGGAACAAGCCTTGGAAGGAATAGCCTACGATAAACTTGATATATCCGATGAAGTTAAAGAGCAGGTCGAGCTTGTTCTTGCTCAGTTCAGAAGGGCCAAAGGCAGGGCCGATGCTCCTGACTCTGAGCTGTTGGATGATATCCTTGCCCTTTATGACACGAGCAATGATTCTTCTATAGATCAAGACCGCCTAAGGAGACTGTCCGAAAAATTACAGTTAATAGGAATATCCGATCTTACACAAGAATCAATAGCTTTGCATGAGATGGTTTCTGCTACTGATGGAGATCCAGGTGCGAGCATTGAGAAGATGGCAGGGCTGCTAAAGAAAATAAAAGATTTCGTGCAAACGGAGAACCTTGAAACAGATACTCCTAGTAGAGAAAAGAGTCCTCCAGCAAGTTGTAGTGGACAAGTATCCAATGATAAAAATAACAAGGCCCCAATTATACCAGATGATTTTCGCTGCCCTATATCCCTGGAGCTGATGAGAGATCCTGTCATTGTCTCAACTGGACAGGTGCATGGCGTCCTGAAGTTGGAGCTGATTACGTTTCAACTTTCATCCTCCCGCTGCTCTAGTGCTGATTATACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGAAGCAGGGCATGGGACGTGTCCAAAGACACAACAGAACCTCTCAAGCACTACTCTTACCCCGAATTATGTGTTGCGTAGCCTTATAGCCCAATGGTGCGAGGCTAATGGTATTGAACCACCAAAACGACCCAGCAGTGCTCGACCATGTAGAAGCTCGTCATCTTGCTCACCTGCTGAACGCACGAAGATTGATATTCTTCTTTGCAAACTTGCATCTGGAAATCCTGAAGATCAACGATCTGCAGCTGGTGAGATCCGTCTTCTCGCAAAACGGAATGCAGATAATCGTGTTGCTATTGCTGAGGCTGGTGCTATACCTCTCCTTGTCAGCCTTCTTTCAACTCCAGACTCCCGTGTTCAAGAGCATGCTGTAACAGCACTTCTTAACCTATCTATATGCGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATCGTTCTCGTGCTCAAGAAGGGGAGCATGGAAGCACGGGAGAATGCTGCAGCCACTCTTTTCAGCCTTTCGGTTGTGGATGAAAATAAAGTTAGAATTGGTGCCTCCGGAGCTATCCCGCCGCTCGTTACACTGCTTAGTGAAGGCACACAAAGAGGTAAGAAAGATGCTGCAACTGCACTTTTCAACTTGTGCATCTACCAAGGAAACAAAGGCAAGGCGGTGAGAGCTGGTGTAGTTCCAACCTTAATGCAGCTTCTCACCGAGCCCGGAACCGGAATGGTGGATGAAGCCTTAGCCATCTTAGCAATACTCGCTAGCCATCCCGAAGGGAAAGCTGCCATTGGATCCGCAAAGGCAGTGCCGGTTTTGGTAGATGTTATTGGGACAGGATCTCCCAGAAACAGAGAGAATGCGGCTGCAGTTCTCGTGCACCTCTGTTCGGGAGACGAGCAACACCTAGTAGAGGCTAGGGAACTTGGAGTGATTAGTCCACTGATAGATTTGGCACGCAGTGGCACAGATAGAGGAAAGCGAAAAGCTGCACAGTTGCTTGAACGAATGAACCGACTGTTCGAGCAGGCAGCACATCAGGAGGAGCTTCGGGTGCTTCGATTACAAGCGTCGGAGTCTCAACCTCAAAGCCAACCATCACAATCAACCTCGACAACGGAGGTCGTTGGTAGCTGA 2175 46.34 METFTLRSDFQCFSAMEEDNGALIQSLIDLVNEIAWISDFRYTVKKQYCNLSRRLKLLIPMFEEIRDSKETVSEDTLKALVLLKEALESAKKLLRFGSEGSKIFLMTFSNRCSFYNYTLLAVEREQIMNKFHEVTARLEQALEGIAYDKLDISDEVKEQVELVLAQFRRAKGRADAPDSELLDDILALYDTSNDSSIDQDRLRRLSEKLQLIGISDLTQESIALHEMVSATDGDPGASIEKMAGLLKKIKDFVQTENLETDTPSREKSPPASCSGQVSNDKNNKAPIIPDDFRCPISLELMRDPVIVSTGQVHGVLKLELITFQLSSSRCSSADYTYERSCIEKWLEAGHGTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSARPCRSSSSCSPAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVSLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHPEGKAAIGSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQHLVEARELGVISPLIDLARSGTDRGKRKAAQLLERMNRLFEQAAHQEELRVLRLQASESQPQSQPSQSTSTTEVVGS 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18368167 18373367 + Lsi02G013630.1 Lsi02g01363 656105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01363 724 Pfam Armadillo/beta-catenin-like repeat 439 478 IPR000225 GO:0005515
Lsi02g01363 724 Pfam Armadillo/beta-catenin-like repeat 604 643 IPR000225 GO:0005515
Lsi02g01363 724 Pfam Armadillo/beta-catenin-like repeat 522 560 IPR000225 GO:0005515
Lsi02g01363 724 Gene3D - 397 722 IPR011989 -
Lsi02g01363 724 SMART arm_5 439 479 IPR000225 GO:0005515
Lsi02g01363 724 SMART arm_5 603 643 IPR000225 GO:0005515
Lsi02g01363 724 SMART arm_5 562 602 IPR000225 GO:0005515
Lsi02g01363 724 SMART arm_5 521 561 IPR000225 GO:0005515
Lsi02g01363 724 SMART arm_5 480 520 IPR000225 GO:0005515
Lsi02g01363 724 SMART arm_5 645 685 IPR000225 GO:0005515
Lsi02g01363 724 PANTHER U BOX DOMAIN-CONTAINING 21 313 - -
Lsi02g01363 724 MobiDBLite consensus disorder prediction 700 724 - -
Lsi02g01363 724 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 450 492 IPR000225 GO:0005515
Lsi02g01363 724 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 385 IPR013083 -
Lsi02g01363 724 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 573 615 IPR000225 GO:0005515
Lsi02g01363 724 ProSiteProfiles U-box domain profile. 287 385 IPR003613 GO:0004842|GO:0016567
Lsi02g01363 724 PANTHER U BOX DOMAIN-CONTAINING 332 701 - -
Lsi02g01363 724 Coils Coil 676 696 - -
Lsi02g01363 724 SUPERFAMILY RING/U-box 288 384 - -
Lsi02g01363 724 Pfam U-box domain 332 382 IPR003613 GO:0004842|GO:0016567
Lsi02g01363 724 Pfam U-box domain 288 312 IPR003613 GO:0004842|GO:0016567
Lsi02g01363 724 MobiDBLite consensus disorder prediction 264 283 - -
Lsi02g01363 724 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 332 701 - -
Lsi02g01363 724 SUPERFAMILY ARM repeat 410 683 IPR016024 -
Lsi02g01363 724 MobiDBLite consensus disorder prediction 257 286 - -
Lsi02g01363 724 Gene3D - 22 147 IPR036537 GO:0007166
Lsi02g01363 724 SMART Ubox_2 291 378 IPR003613 GO:0004842|GO:0016567
Lsi02g01363 724 CDD RING-Ubox_PUB 292 358 IPR045210 -
Lsi02g01363 724 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 21 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00373 Lsi-Chr1:3288460 Lsi02g01363 Lsi-Chr2:18368167 4.33E-55 dispersed
Lsi02g00349 Lsi-Chr2:2996314 Lsi02g01363 Lsi-Chr2:18368167 3.58E-06 dispersed
Lsi02g01363 Lsi-Chr2:18368167 Lsi04g01143 Lsi-Chr4:15795236 1.58E-10 dispersed
Lsi04g00538 Lsi-Chr4:4973740 Lsi02g01363 Lsi-Chr2:18368167 1.29E-72 dispersed
Lsi04g02082 Lsi-Chr4:27995693 Lsi02g01363 Lsi-Chr2:18368167 3.52E-30 dispersed
Lsi08g01242 Lsi-Chr8:20872399 Lsi02g01363 Lsi-Chr2:18368167 1.90E-28 dispersed
Lsi08g01525 Lsi-Chr8:23309098 Lsi02g01363 Lsi-Chr2:18368167 9.82E-67 dispersed
Lsi03g00296 Lsi-Chr3:3597088 Lsi02g01363 Lsi-Chr2:18368167 1.98E-113 transposed
Lsi04g00088 Lsi-Chr4:1040825 Lsi02g01363 Lsi-Chr2:18368167 0 transposed
Lsi04g02405 Lsi-Chr4:31185033 Lsi02g01363 Lsi-Chr2:18368167 1.04E-06 transposed
Lsi08g00778 Lsi-Chr8:16156667 Lsi02g01363 Lsi-Chr2:18368167 6.00E-15 transposed
Lsi09g00646 Lsi-Chr9:7207350 Lsi02g01363 Lsi-Chr2:18368167 4.66E-83 transposed
Lsi09g00669 Lsi-Chr9:7513534 Lsi02g01363 Lsi-Chr2:18368167 8.88E-06 transposed
Lsi10g00826 Lsi-Chr10:11573842 Lsi02g01363 Lsi-Chr2:18368167 1.13E-165 transposed
Lsi10g01368 Lsi-Chr10:17834008 Lsi02g01363 Lsi-Chr2:18368167 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01363 - - csv:101218572 1112.06