Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01364 ATGGATTTCTCTTCTGTTCCAATCTATTTAGATCCTCCTCCCAATTGGCACCAGCAATCAAATCATCATCATCATCACCATCCTCAGATAAGTAATAATAATGGATCTCCTCAACAACAACATCACCTTCTTTCATTGCCAACTCAACAACTCTCCTCTGCACCGTCGTCTCATGTCGGTGGTGTTAGCTCGATCCGGCGCGGTTCGATGGCGGACCGAGCTCGGATGGCTAACGTACCACTACCGGAGACGGCGCTAAAGTGTCCTCGATGTGATTCCACCAATACGAAGTTTTGTTACTTTAATAACTATAGTCTCTCTCAGCCTCGCCACTTTTGTAAGAGTTGTCGTCGATATTGGACTCGTGGGGGTGCCCTAAGGAACGTTCCTGTCGGAGGCGGTTGTCGTCGGAATAAGAAGAATAAAACTAGACGCTCGAAGTCTCCAGCTGCAGCTGCTGGGGCTGGAAATGAAACTCAAGTGATGAATAATAATTCAAACTCACCCACCACTACTACAATTCCCTTGCACAGTAGTGCTGAGAATATTATAGGTCATTTACAGCCTACTCAACATCCTCACCTTTCATTCATGGCTTCATTGAATAATTTTTCTCGATACGGGACAACGAGTTTAGGGTTGAATTTTAACGAGATCCAGGCTCAAGCTAGCGATCTCGGTAACGGCGCCCTTTTGAATCATCATCCGTGGCGTAGTTCCCAAAACTTTCCTCTCTCAGGTGGCCTAGAAACCCCGCCTGGGTTGTATCCATTTCAAATTAGCGGCGGTGGCGACGGCGACGACAACGACAACACAACAAATTCAATCCTAACACCAAATTCAAGGGCAACCCATTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTCCTGAATTTGTTGAAATCATCAAATTTGGGTATCAATAATTCTGAAAACAATCAATTTTGGAGCAATGGAAATGGTTGGACAGATCTTTCAGCTATCAGTTCTACTTCAAGCGGCCATATTTCTTGTGACTTCAATCATTAA 1029 44.8 MDFSSVPIYLDPPPNWHQQSNHHHHHHPQISNNNGSPQQQHHLLSLPTQQLSSAPSSHVGGVSSIRRGSMADRARMANVPLPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKSCRRYWTRGGALRNVPVGGGCRRNKKNKTRRSKSPAAAAGAGNETQVMNNNSNSPTTTTIPLHSSAENIIGHLQPTQHPHLSFMASLNNFSRYGTTSLGLNFNEIQAQASDLGNGALLNHHPWRSSQNFPLSGGLETPPGLYPFQISGGGDGDDNDNTTNSILTPNSRATHLPPVKIEETQVLNLLKSSNLGINNSENNQFWSNGNGWTDLSAISSTSSGHISCDFNH 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18392802 18395325 + Lsi02G013640.1 Lsi02g01364 656106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01364 342 ProSitePatterns Zinc finger Dof-type signature. 88 124 IPR003851 GO:0003677|GO:0006355
Lsi02g01364 342 MobiDBLite consensus disorder prediction 259 285 - -
Lsi02g01364 342 MobiDBLite consensus disorder prediction 265 282 - -
Lsi02g01364 342 Pfam Dof domain, zinc finger 85 140 IPR003851 GO:0003677|GO:0006355
Lsi02g01364 342 MobiDBLite consensus disorder prediction 11 42 - -
Lsi02g01364 342 ProSiteProfiles Zinc finger Dof-type profile. 86 140 IPR003851 GO:0003677|GO:0006355
Lsi02g01364 342 MobiDBLite consensus disorder prediction 132 168 - -
Lsi02g01364 342 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 35 333 - -
Lsi02g01364 342 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 35 333 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01364 Lsi-Chr2:18392802 Lsi04g00882 Lsi-Chr4:8680085 3.01E-68 dispersed
Lsi07g00560 Lsi-Chr7:5918485 Lsi02g01364 Lsi-Chr2:18392802 1.57E-33 dispersed
Lsi01g01417 Lsi-Chr1:12314911 Lsi02g01364 Lsi-Chr2:18392802 1.94E-47 wgd
Lsi10g01305 Lsi-Chr10:17237805 Lsi02g01364 Lsi-Chr2:18392802 1.26E-34 wgd
Lsi10g01367 Lsi-Chr10:17825835 Lsi02g01364 Lsi-Chr2:18392802 1.81E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24824 PF02701 zf-Dof 1.50E-32 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01364 - - csv:101218334 568.54