Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01364 ATGGATTTCTCTTCTGTTCCAATCTATTTAGATCCTCCTCCCAATTGGCACCAGCAATCAAATCATCATCATCATCACCATCCTCAGATAAGTAATAATAATGGATCTCCTCAACAACAACATCACCTTCTTTCATTGCCAACTCAACAACTCTCCTCTGCACCGTCGTCTCATGTCGGTGGTGTTAGCTCGATCCGGCGCGGTTCGATGGCGGACCGAGCTCGGATGGCTAACGTACCACTACCGGAGACGGCGCTAAAGTGTCCTCGATGTGATTCCACCAATACGAAGTTTTGTTACTTTAATAACTATAGTCTCTCTCAGCCTCGCCACTTTTGTAAGAGTTGTCGTCGATATTGGACTCGTGGGGGTGCCCTAAGGAACGTTCCTGTCGGAGGCGGTTGTCGTCGGAATAAGAAGAATAAAACTAGACGCTCGAAGTCTCCAGCTGCAGCTGCTGGGGCTGGAAATGAAACTCAAGTGATGAATAATAATTCAAACTCACCCACCACTACTACAATTCCCTTGCACAGTAGTGCTGAGAATATTATAGGTCATTTACAGCCTACTCAACATCCTCACCTTTCATTCATGGCTTCATTGAATAATTTTTCTCGATACGGGACAACGAGTTTAGGGTTGAATTTTAACGAGATCCAGGCTCAAGCTAGCGATCTCGGTAACGGCGCCCTTTTGAATCATCATCCGTGGCGTAGTTCCCAAAACTTTCCTCTCTCAGGTGGCCTAGAAACCCCGCCTGGGTTGTATCCATTTCAAATTAGCGGCGGTGGCGACGGCGACGACAACGACAACACAACAAATTCAATCCTAACACCAAATTCAAGGGCAACCCATTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTCCTGAATTTGTTGAAATCATCAAATTTGGGTATCAATAATTCTGAAAACAATCAATTTTGGAGCAATGGAAATGGTTGGACAGATCTTTCAGCTATCAGTTCTACTTCAAGCGGCCATATTTCTTGTGACTTCAATCATTAA 1029 44.8 MDFSSVPIYLDPPPNWHQQSNHHHHHHPQISNNNGSPQQQHHLLSLPTQQLSSAPSSHVGGVSSIRRGSMADRARMANVPLPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKSCRRYWTRGGALRNVPVGGGCRRNKKNKTRRSKSPAAAAGAGNETQVMNNNSNSPTTTTIPLHSSAENIIGHLQPTQHPHLSFMASLNNFSRYGTTSLGLNFNEIQAQASDLGNGALLNHHPWRSSQNFPLSGGLETPPGLYPFQISGGGDGDDNDNTTNSILTPNSRATHLPPVKIEETQVLNLLKSSNLGINNSENNQFWSNGNGWTDLSAISSTSSGHISCDFNH 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18392802 18395325 + Lsi02G013640.1 Lsi02g01364 656106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01364 342 ProSitePatterns Zinc finger Dof-type signature. 88 124 IPR003851 GO:0003677|GO:0006355
Lsi02g01364 342 MobiDBLite consensus disorder prediction 259 285 - -
Lsi02g01364 342 MobiDBLite consensus disorder prediction 265 282 - -
Lsi02g01364 342 Pfam Dof domain, zinc finger 85 140 IPR003851 GO:0003677|GO:0006355
Lsi02g01364 342 MobiDBLite consensus disorder prediction 11 42 - -
Lsi02g01364 342 ProSiteProfiles Zinc finger Dof-type profile. 86 140 IPR003851 GO:0003677|GO:0006355
Lsi02g01364 342 MobiDBLite consensus disorder prediction 132 168 - -
Lsi02g01364 342 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 35 333 - -
Lsi02g01364 342 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 35 333 IPR045174 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01364 - - - csv:101218334 568.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01364 Lsi-Chr2:18392802 Lsi04g00882 Lsi-Chr4:8680085 3.01E-68 dispersed
Lsi07g00560 Lsi-Chr7:5918485 Lsi02g01364 Lsi-Chr2:18392802 1.57E-33 dispersed
Lsi01g01417 Lsi-Chr1:12314911 Lsi02g01364 Lsi-Chr2:18392802 1.94E-47 wgd
Lsi10g01305 Lsi-Chr10:17237805 Lsi02g01364 Lsi-Chr2:18392802 1.26E-34 wgd
Lsi10g01367 Lsi-Chr10:17825835 Lsi02g01364 Lsi-Chr2:18392802 1.81E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g427 . Blo03g01238 . . . Bpe08g01366 Bma14g00500 Bma07g01538 Cmo13g00132 . Cma01g00595 Cma13g00133 Car01g00540 Car13g00103 Sed08g2509 Cpe05g00913 Cpe20g00813 Bhi08g00258 Tan01g2611 Cmetu12g0765 . Hepe10g1082 . . Cla02g01976 Cam02g2096 Cec02g2134 Cco02g2164 Clacu02g2084 Cmu02g2021 Cre02g2330 Cone1ag0649 Cone5ag1158 . . Lsi02g01364 Csa06g01499 Chy11g01243 Cme11g01283 . . . Bda09g00153 . . . . Sed01g0886 . Cmo20g00451 Cma02g00812 . Car02g00587 . . . Bhi10g00686 Tan05g0376 Cmetu11g2570 . Hepe10g1221 . . Cla03g00153 Cam03g0159 Cec03g0158 Cco03g0165 Clacu03g0162 Cmu03g0779 Cre03g0474 . Csa01g02399 Chy12g00184 Cme12g00200
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g00805 CCT 16 176 C2C2-Dof Transcription Factor Family AT1G29160 58.3 9.8e-45 176.8
Lsi01g00243 CCT 6 162 C2C2-Dof Transcription Factor Family AT1G29160 50.9 2.8e-39 158.7
Lsi02g00805 CCT 16 174 C2C2-Dof Transcription Factor Family AT2G34140 56.5 6.8e-43 170.6
Lsi03g02101 CCT,ECH 46 178 C2C2-Dof Transcription Factor Family AT2G37590 68.1 6.6e-42 168.3
Lsi04g00882 . 1 132 C2C2-Dof Transcription Factor Family AT2G37590 64.5 8.0e-40 161.4
Lsi02g01651 . 1 128 C2C2-Dof Transcription Factor Family AT2G37590 63.3 3.4e-38 156.0
Lsi02g01364 . 64 138 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.9e-37 152.1
Lsi03g01499 . 135 514 C2C2-Dof Transcription Factor Family AT5G39660 52.5 1.2e-81 300.8
Lsi02g01364 . 65 138 C2C2-Dof Transcription Factor Family AT5G02460 90.5 5.3e-38 155.6
Lsi01g01417 CCT,ECH 51 124 C2C2-Dof Transcription Factor Family AT5G02460 87.8 5.9e-37 152.1
Lsi04g00882 . 55 236 C2C2-Dof Transcription Factor Family AT3G55370 50.7 2.1e-41 166.8
Lsi02g01364 . 49 142 C2C2-Dof Transcription Factor Family AT3G55370 76.6 3.4e-39 159.5
Lsi03g02101 CCT,ECH 99 181 C2C2-Dof Transcription Factor Family AT3G55370 79.5 1.2e-36 151.0
Lsi06g01388 CCT 28 328 C2C2-Dof Transcription Factor Family AT5G60850 51.9 9.1e-46 181.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005685 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24824 PF02701 zf-Dof 1.50E-32 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g01364 Lsi_Chr02 FPKM 26.766342 29.59371 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0