Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g01364 | ATGGATTTCTCTTCTGTTCCAATCTATTTAGATCCTCCTCCCAATTGGCACCAGCAATCAAATCATCATCATCATCACCATCCTCAGATAAGTAATAATAATGGATCTCCTCAACAACAACATCACCTTCTTTCATTGCCAACTCAACAACTCTCCTCTGCACCGTCGTCTCATGTCGGTGGTGTTAGCTCGATCCGGCGCGGTTCGATGGCGGACCGAGCTCGGATGGCTAACGTACCACTACCGGAGACGGCGCTAAAGTGTCCTCGATGTGATTCCACCAATACGAAGTTTTGTTACTTTAATAACTATAGTCTCTCTCAGCCTCGCCACTTTTGTAAGAGTTGTCGTCGATATTGGACTCGTGGGGGTGCCCTAAGGAACGTTCCTGTCGGAGGCGGTTGTCGTCGGAATAAGAAGAATAAAACTAGACGCTCGAAGTCTCCAGCTGCAGCTGCTGGGGCTGGAAATGAAACTCAAGTGATGAATAATAATTCAAACTCACCCACCACTACTACAATTCCCTTGCACAGTAGTGCTGAGAATATTATAGGTCATTTACAGCCTACTCAACATCCTCACCTTTCATTCATGGCTTCATTGAATAATTTTTCTCGATACGGGACAACGAGTTTAGGGTTGAATTTTAACGAGATCCAGGCTCAAGCTAGCGATCTCGGTAACGGCGCCCTTTTGAATCATCATCCGTGGCGTAGTTCCCAAAACTTTCCTCTCTCAGGTGGCCTAGAAACCCCGCCTGGGTTGTATCCATTTCAAATTAGCGGCGGTGGCGACGGCGACGACAACGACAACACAACAAATTCAATCCTAACACCAAATTCAAGGGCAACCCATTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTCCTGAATTTGTTGAAATCATCAAATTTGGGTATCAATAATTCTGAAAACAATCAATTTTGGAGCAATGGAAATGGTTGGACAGATCTTTCAGCTATCAGTTCTACTTCAAGCGGCCATATTTCTTGTGACTTCAATCATTAA | 1029 | 44.8 | MDFSSVPIYLDPPPNWHQQSNHHHHHHPQISNNNGSPQQQHHLLSLPTQQLSSAPSSHVGGVSSIRRGSMADRARMANVPLPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKSCRRYWTRGGALRNVPVGGGCRRNKKNKTRRSKSPAAAAGAGNETQVMNNNSNSPTTTTIPLHSSAENIIGHLQPTQHPHLSFMASLNNFSRYGTTSLGLNFNEIQAQASDLGNGALLNHHPWRSSQNFPLSGGLETPPGLYPFQISGGGDGDDNDNTTNSILTPNSRATHLPPVKIEETQVLNLLKSSNLGINNSENNQFWSNGNGWTDLSAISSTSSGHISCDFNH | 342 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 18392802 | 18395325 | + | Lsi02G013640.1 | Lsi02g01364 | 656106 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g01364 | 342 | ProSitePatterns | Zinc finger Dof-type signature. | 88 | 124 | IPR003851 | GO:0003677|GO:0006355 | |
Lsi02g01364 | 342 | MobiDBLite | consensus disorder prediction | 259 | 285 | - | - | |
Lsi02g01364 | 342 | MobiDBLite | consensus disorder prediction | 265 | 282 | - | - | |
Lsi02g01364 | 342 | Pfam | Dof domain, zinc finger | 85 | 140 | IPR003851 | GO:0003677|GO:0006355 | |
Lsi02g01364 | 342 | MobiDBLite | consensus disorder prediction | 11 | 42 | - | - | |
Lsi02g01364 | 342 | ProSiteProfiles | Zinc finger Dof-type profile. | 86 | 140 | IPR003851 | GO:0003677|GO:0006355 | |
Lsi02g01364 | 342 | MobiDBLite | consensus disorder prediction | 132 | 168 | - | - | |
Lsi02g01364 | 342 | PANTHER | DOF DOMAIN ZINC FINGER PROTEIN | 35 | 333 | - | - | |
Lsi02g01364 | 342 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 35 | 333 | IPR045174 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01364 | Lsi-Chr2:18392802 | Lsi04g00882 | Lsi-Chr4:8680085 | 3.01E-68 | dispersed | |
Lsi07g00560 | Lsi-Chr7:5918485 | Lsi02g01364 | Lsi-Chr2:18392802 | 1.57E-33 | dispersed | |
Lsi01g01417 | Lsi-Chr1:12314911 | Lsi02g01364 | Lsi-Chr2:18392802 | 1.94E-47 | wgd | |
Lsi10g01305 | Lsi-Chr10:17237805 | Lsi02g01364 | Lsi-Chr2:18392802 | 1.26E-34 | wgd | |
Lsi10g01367 | Lsi-Chr10:17825835 | Lsi02g01364 | Lsi-Chr2:18392802 | 1.81E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24824 | PF02701 | zf-Dof | 1.50E-32 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g01364 | - | - | csv:101218334 | 568.54 |