Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g01380 | ATGGGTAGAGGCGGGGAAAACTACGGGAAAAAAGAGATTTTTGCTGCTACCACATCGAAGAAAGAAACGTATCCTGCCTGGGCAAAGGATGTTCGAGAATGCGTAGAGAAGTACCAAGTGAACCCTGATCTTGGATTATCATCTGAAGAGGTTGAAAACAAGAGAAACATCTATGGTTACAATGAGTTGGAGAAACATGAAGGTACTTCAATCTTCAAACTGATTTTGGAACAATTTAATGACACACTAGTTAGGATTCTATTAGCTGCAGCAGTTGTATCTTTTGTTCTTGCGTGGTATGATGGCGAGGAAGGAGGTGAGATGGAGATCACAGCATTTGTGGAGCCTCTAGTTATCTTTTTGATATTGATTATCAATGCCATTGTTGGCATTTGGCAAGAGAACAATGCTGAGAAAGCATTGGAAGCTCTTAAAGAAATTCAGTCTGAACAGGCTTCAGTAATAAGAAATGGTAAGCGAACTTCAATTGTTGCAAAAGATCTTGTTCCGGGTGATATAGTAGAACTCAGAGTTGGGGATAAGGTGCCTGCTGACATGCGAGTATTGCGTTTAATCAGCTCTACTTTTCGGGTTGAGCAAGGTTCCTTGACGGGCGAGAGTGAAGCAGTGAGCAAGACTGCCAAGGCTGTGCCAGAAGATACAGATATACAAGGGAAAAAGTGTATGGTTTTTGCAGGGACAACAGTTGTCAATGGAAATTGTATTTGCATTGTTACCCAAATAGGAATGAGCACTGAACTCGGACAGGTGCATTCTCAGATACAAGAAGCATCCCAGAGTGAAGATGATACGCCATTAAAGAAAAAGTTGAATGAGTTTGGAGAACTTTTAACAGCAATAATTGGAGTGATCTGTGCTCTAGTTTGGCTTATTAATGTCAAATACTTCCTCACTTGGGAATATGTTGATGGTTTGCCTGCAAATTTCAAGTTCTCATTTGAGAAATGTACATATTACTTTGAGATTGCTGTGGCATTGGCTGTTGCTGCAATTCCAGAAGGTTTGCCTGCAGTCATAACAACATGCTTGGCACTTGGCACTCGGAAAATGGCCCAAAAGAATGCCCTTGTTCGTAAGCTGCCTAGTGTTGAAACACTTGGCTGTACAACTGTGATATGTTCTGATAAGACAGGTACTCTAACAACTAATCAGATGGCTGTGGCGAAAATTGTGGCTCTTGGTTCTCGTGTTGGTACTCTACGAGCTTTTGATGTGGAGGGGACTACATATGATCCTTTAGATGGAAAAATAATTGGTTGGCTTGGAGGTCAATTGGATGCTAATCTACAAATGTTGGCAAAGATCGCTGCGGTCTGTAATGATGCAGGTGTTGAAAGATCTGGCCATCATTTTGTTGCGAATGGAATGCCTACTGAAGCTGCGTTGAAGGTGCGCGTAATGTTTGATAAGCTTCTTTATGTTGTTCTATGGATCTGCCTGTTGATAAAGACAAATTTTGTTTCTGATGCCTTTTATCTGAATGTTAAGGTTCTTGTGGAAAAGATGGGGCTTCCTGAAGGATATGACTCAAGTTCAGCTACTGTTAATGGGGATGTCCTGCGATGCTGCCAAGCTTGGAATAAGAATGAGCAACGCATTGCTACTTTGGAGTTTGACCGAGACCGTAAGTCCATGGGAGTCATCACAAATTCTAAGTCAGGGAAGAAATCATTACTCGTGAAGGGTGCTGTTGAACATCTTTTGGATCGGAGTTCATTTATTCAGCTGCTTGATGGAACTATAGTGAATTTGGACTCAGACTCGAAGAGATACCTCTTAGATTGTTTGCGTGAGATGTCATCTAGTGCATTAAGGTGTCTAGGTTTTGCATACAAGGAAGATCCTCCAGAATTTTCCGATTATAATATTGGTGACGAAGACCATCCAGCACATCAGCTTCTACTTGACCCGTCCAAATACTCTACAATTGAAAGTAATCTTATTTTTGCTGGCTTTGTTGGGTTAAGGGATCCTCCTCGAAAAGAGGTTCATCAAGCAATTGAAGACTGTAAAGCTGCTGGTATTCGCGTCATGGTTATCACAGGGGACAACCAGAACACAGCTGAAGCTATATGTCGAGAAATAGGTGTATTTGGACAACATGAAGCTATAAATTCCAGAAGTTTAACTGGAAAAGAATTCATGGCAATGAGCCGGGAGGATCAAAAATTTCATCTAAGACAAGATGGAGGACTTCTTTTCTCAAGAGCCGAACCAAGACATAAACAAGAGATAGTAAGATTGCTCAAGGAAGATGGTGAAGTTGTTGCAATGACTGGAGATGGAGTCAATGATGCACCTGCCTTGAAGTTGGCTGATATTGGGATTGCGATGGGCATTGCTGGGACAGAGGTTGCAAAGGAAGCCTCTGACATGGTTCTTGCAGATGACAATTTTAGTACCATAGTTGCAGCAGTTGGTGAAGGCAGATCAATTTACGACAATATGAAGGCCTTTATCAGGTACATGATTTCCTCAAATATTGGTGAGGTTGCATCGATATTTTTGACAGCAGCACTGGGTATTCCCGAAGGGATGATCCCTGTTCAGCTTCTCTGGGTTAATCTTGTTACAGATGGACCCCCAGCAACTGCGTTGGGATTTAATCCACCTGATTCCGATATAATGAAGAAACCGCCAAGGAAAAGTGACGACTCATTGATCACGGCCTGGATTTTGTTCCGCTATTTGGTGATTGGACTTTACGTAGGGTTAGCAACTGTAGGAGTATTTATTATTTGGTATACACACGGTTCATTCTTGGGCATCGACCTGTCTGGAGATGGTCACAGTCTGGTCTCCTATTCTCAGCTCGCCAACTGGGGTCAGTGCCCGTCCTGGGAAGGATTCTCCGTGTCGCCCTTCACAGCCGGGGATGAAGTTTTCAGCTTCGATTCAGATCCATGCGATTACTTCCGCTCAGGCAAGATCAAGGCATCTACCCTCTCACTCTCTGTTTTGGTCGCCATTGAGATGTTCAATTCCCTCAATGCCCTCTCCGAGGATGGAAGCTTGTTGACAATGCCCCCTTGGGTTAACCCCTGGCTCCTCCTCGCCATGTCTGTTTCATTCGGCTTACATTTCTTGATTCTGTATGTGCCGTTCCTTGCCAAAATCTTTGGCATCGTCCCACTGTCCTTGAATGAATGGCTCTTGGTTCTGGCCGTGGCATTGCCCGTGATCATAATCGATGAGATTCTGAAATTCATCGGAAGGCTTACTAGTGGGTTGAGGACTTCTCGCCCGAGCAGATTATCAAAGCAGAAATCGGAGTAA | 3297 | 43.28 | MGRGGENYGKKEIFAATTSKKETYPAWAKDVRECVEKYQVNPDLGLSSEEVENKRNIYGYNELEKHEGTSIFKLILEQFNDTLVRILLAAAVVSFVLAWYDGEEGGEMEITAFVEPLVIFLILIINAIVGIWQENNAEKALEALKEIQSEQASVIRNGKRTSIVAKDLVPGDIVELRVGDKVPADMRVLRLISSTFRVEQGSLTGESEAVSKTAKAVPEDTDIQGKKCMVFAGTTVVNGNCICIVTQIGMSTELGQVHSQIQEASQSEDDTPLKKKLNEFGELLTAIIGVICALVWLINVKYFLTWEYVDGLPANFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVAKIVALGSRVGTLRAFDVEGTTYDPLDGKIIGWLGGQLDANLQMLAKIAAVCNDAGVERSGHHFVANGMPTEAALKVRVMFDKLLYVVLWICLLIKTNFVSDAFYLNVKVLVEKMGLPEGYDSSSATVNGDVLRCCQAWNKNEQRIATLEFDRDRKSMGVITNSKSGKKSLLVKGAVEHLLDRSSFIQLLDGTIVNLDSDSKRYLLDCLREMSSSALRCLGFAYKEDPPEFSDYNIGDEDHPAHQLLLDPSKYSTIESNLIFAGFVGLRDPPRKEVHQAIEDCKAAGIRVMVITGDNQNTAEAICREIGVFGQHEAINSRSLTGKEFMAMSREDQKFHLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYDNMKAFIRYMISSNIGEVASIFLTAALGIPEGMIPVQLLWVNLVTDGPPATALGFNPPDSDIMKKPPRKSDDSLITAWILFRYLVIGLYVGLATVGVFIIWYTHGSFLGIDLSGDGHSLVSYSQLANWGQCPSWEGFSVSPFTAGDEVFSFDSDPCDYFRSGKIKASTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAKIFGIVPLSLNEWLLVLAVALPVIIIDEILKFIGRLTSGLRTSRPSRLSKQKSE | 1098 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 18820589 | 18826914 | + | Lsi02G013800.1 | Lsi02g01380 | 656122 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g01380 | 1098 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 382 | 388 | IPR018303 | - | |
Lsi02g01380 | 1098 | Pfam | Cation transporting ATPase, C-terminus | 851 | 1077 | IPR006068 | - | |
Lsi02g01380 | 1098 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 25 | 1079 | IPR023298 | - | |
Lsi02g01380 | 1098 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 118 | 307 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi02g01380 | 1098 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 740 | 850 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi02g01380 | 1098 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 319 | 401 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi02g01380 | 1098 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 4 | 1097 | - | - | |
Lsi02g01380 | 1098 | Pfam | haloacid dehalogenase-like hydrolase | 660 | 780 | - | - | |
Lsi02g01380 | 1098 | Pfam | Cation transport ATPase (P-type) | 444 | 581 | - | - | |
Lsi02g01380 | 1098 | SFLD | Haloacid Dehalogenase | 361 | 818 | - | - | |
Lsi02g01380 | 1098 | Gene3D | - | 77 | 165 | - | - | |
Lsi02g01380 | 1098 | PRINTS | P-type cation-transporting ATPase superfamily signature | 199 | 213 | - | - | |
Lsi02g01380 | 1098 | PRINTS | P-type cation-transporting ATPase superfamily signature | 380 | 394 | - | - | |
Lsi02g01380 | 1098 | PRINTS | P-type cation-transporting ATPase superfamily signature | 766 | 785 | - | - | |
Lsi02g01380 | 1098 | PRINTS | P-type cation-transporting ATPase superfamily signature | 680 | 690 | - | - | |
Lsi02g01380 | 1098 | PRINTS | P-type cation-transporting ATPase superfamily signature | 658 | 669 | - | - | |
Lsi02g01380 | 1098 | PRINTS | P-type cation-transporting ATPase superfamily signature | 790 | 802 | - | - | |
Lsi02g01380 | 1098 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 387 | 662 | IPR023299 | GO:0000166 | |
Lsi02g01380 | 1098 | PANTHER | RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED | 4 | 1097 | - | - | |
Lsi02g01380 | 1098 | Gene3D | - | 775 | 1083 | - | - | |
Lsi02g01380 | 1098 | Gene3D | - | 208 | 384 | - | - | |
Lsi02g01380 | 1098 | Gene3D | - | 390 | 665 | IPR023299 | GO:0000166 | |
Lsi02g01380 | 1098 | SMART | Cation_ATPase_N_a_2 | 25 | 99 | IPR004014 | - | |
Lsi02g01380 | 1098 | Pfam | Cation transporter/ATPase, N-terminus | 27 | 94 | IPR004014 | - | |
Lsi02g01380 | 1098 | SFLD | p-type atpase | 361 | 818 | IPR044492 | - | |
Lsi02g01380 | 1098 | Pfam | E1-E2 ATPase | 147 | 360 | - | - | |
Lsi02g01380 | 1098 | SUPERFAMILY | HAD-like | 378 | 870 | IPR036412 | - | |
Lsi02g01380 | 1098 | SUPERFAMILY | Calcium ATPase, transduction domain A | 149 | 259 | IPR008250 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01380 | Lsi-Chr2:18820589 | Lsi11g00805 | Lsi-Chr11:9824443 | 3.58E-98 | dispersed | |
Lsi11g01354 | Lsi-Chr11:22164133 | Lsi02g01380 | Lsi-Chr2:18820589 | 2.39E-11 | dispersed | |
Lsi02g01380 | Lsi-Chr2:18820589 | Lsi08g01538 | Lsi-Chr8:23393219 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g01380 | K01537 | - | csv:101206729 | 2003.79 |