Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01380 ATGGGTAGAGGCGGGGAAAACTACGGGAAAAAAGAGATTTTTGCTGCTACCACATCGAAGAAAGAAACGTATCCTGCCTGGGCAAAGGATGTTCGAGAATGCGTAGAGAAGTACCAAGTGAACCCTGATCTTGGATTATCATCTGAAGAGGTTGAAAACAAGAGAAACATCTATGGTTACAATGAGTTGGAGAAACATGAAGGTACTTCAATCTTCAAACTGATTTTGGAACAATTTAATGACACACTAGTTAGGATTCTATTAGCTGCAGCAGTTGTATCTTTTGTTCTTGCGTGGTATGATGGCGAGGAAGGAGGTGAGATGGAGATCACAGCATTTGTGGAGCCTCTAGTTATCTTTTTGATATTGATTATCAATGCCATTGTTGGCATTTGGCAAGAGAACAATGCTGAGAAAGCATTGGAAGCTCTTAAAGAAATTCAGTCTGAACAGGCTTCAGTAATAAGAAATGGTAAGCGAACTTCAATTGTTGCAAAAGATCTTGTTCCGGGTGATATAGTAGAACTCAGAGTTGGGGATAAGGTGCCTGCTGACATGCGAGTATTGCGTTTAATCAGCTCTACTTTTCGGGTTGAGCAAGGTTCCTTGACGGGCGAGAGTGAAGCAGTGAGCAAGACTGCCAAGGCTGTGCCAGAAGATACAGATATACAAGGGAAAAAGTGTATGGTTTTTGCAGGGACAACAGTTGTCAATGGAAATTGTATTTGCATTGTTACCCAAATAGGAATGAGCACTGAACTCGGACAGGTGCATTCTCAGATACAAGAAGCATCCCAGAGTGAAGATGATACGCCATTAAAGAAAAAGTTGAATGAGTTTGGAGAACTTTTAACAGCAATAATTGGAGTGATCTGTGCTCTAGTTTGGCTTATTAATGTCAAATACTTCCTCACTTGGGAATATGTTGATGGTTTGCCTGCAAATTTCAAGTTCTCATTTGAGAAATGTACATATTACTTTGAGATTGCTGTGGCATTGGCTGTTGCTGCAATTCCAGAAGGTTTGCCTGCAGTCATAACAACATGCTTGGCACTTGGCACTCGGAAAATGGCCCAAAAGAATGCCCTTGTTCGTAAGCTGCCTAGTGTTGAAACACTTGGCTGTACAACTGTGATATGTTCTGATAAGACAGGTACTCTAACAACTAATCAGATGGCTGTGGCGAAAATTGTGGCTCTTGGTTCTCGTGTTGGTACTCTACGAGCTTTTGATGTGGAGGGGACTACATATGATCCTTTAGATGGAAAAATAATTGGTTGGCTTGGAGGTCAATTGGATGCTAATCTACAAATGTTGGCAAAGATCGCTGCGGTCTGTAATGATGCAGGTGTTGAAAGATCTGGCCATCATTTTGTTGCGAATGGAATGCCTACTGAAGCTGCGTTGAAGGTGCGCGTAATGTTTGATAAGCTTCTTTATGTTGTTCTATGGATCTGCCTGTTGATAAAGACAAATTTTGTTTCTGATGCCTTTTATCTGAATGTTAAGGTTCTTGTGGAAAAGATGGGGCTTCCTGAAGGATATGACTCAAGTTCAGCTACTGTTAATGGGGATGTCCTGCGATGCTGCCAAGCTTGGAATAAGAATGAGCAACGCATTGCTACTTTGGAGTTTGACCGAGACCGTAAGTCCATGGGAGTCATCACAAATTCTAAGTCAGGGAAGAAATCATTACTCGTGAAGGGTGCTGTTGAACATCTTTTGGATCGGAGTTCATTTATTCAGCTGCTTGATGGAACTATAGTGAATTTGGACTCAGACTCGAAGAGATACCTCTTAGATTGTTTGCGTGAGATGTCATCTAGTGCATTAAGGTGTCTAGGTTTTGCATACAAGGAAGATCCTCCAGAATTTTCCGATTATAATATTGGTGACGAAGACCATCCAGCACATCAGCTTCTACTTGACCCGTCCAAATACTCTACAATTGAAAGTAATCTTATTTTTGCTGGCTTTGTTGGGTTAAGGGATCCTCCTCGAAAAGAGGTTCATCAAGCAATTGAAGACTGTAAAGCTGCTGGTATTCGCGTCATGGTTATCACAGGGGACAACCAGAACACAGCTGAAGCTATATGTCGAGAAATAGGTGTATTTGGACAACATGAAGCTATAAATTCCAGAAGTTTAACTGGAAAAGAATTCATGGCAATGAGCCGGGAGGATCAAAAATTTCATCTAAGACAAGATGGAGGACTTCTTTTCTCAAGAGCCGAACCAAGACATAAACAAGAGATAGTAAGATTGCTCAAGGAAGATGGTGAAGTTGTTGCAATGACTGGAGATGGAGTCAATGATGCACCTGCCTTGAAGTTGGCTGATATTGGGATTGCGATGGGCATTGCTGGGACAGAGGTTGCAAAGGAAGCCTCTGACATGGTTCTTGCAGATGACAATTTTAGTACCATAGTTGCAGCAGTTGGTGAAGGCAGATCAATTTACGACAATATGAAGGCCTTTATCAGGTACATGATTTCCTCAAATATTGGTGAGGTTGCATCGATATTTTTGACAGCAGCACTGGGTATTCCCGAAGGGATGATCCCTGTTCAGCTTCTCTGGGTTAATCTTGTTACAGATGGACCCCCAGCAACTGCGTTGGGATTTAATCCACCTGATTCCGATATAATGAAGAAACCGCCAAGGAAAAGTGACGACTCATTGATCACGGCCTGGATTTTGTTCCGCTATTTGGTGATTGGACTTTACGTAGGGTTAGCAACTGTAGGAGTATTTATTATTTGGTATACACACGGTTCATTCTTGGGCATCGACCTGTCTGGAGATGGTCACAGTCTGGTCTCCTATTCTCAGCTCGCCAACTGGGGTCAGTGCCCGTCCTGGGAAGGATTCTCCGTGTCGCCCTTCACAGCCGGGGATGAAGTTTTCAGCTTCGATTCAGATCCATGCGATTACTTCCGCTCAGGCAAGATCAAGGCATCTACCCTCTCACTCTCTGTTTTGGTCGCCATTGAGATGTTCAATTCCCTCAATGCCCTCTCCGAGGATGGAAGCTTGTTGACAATGCCCCCTTGGGTTAACCCCTGGCTCCTCCTCGCCATGTCTGTTTCATTCGGCTTACATTTCTTGATTCTGTATGTGCCGTTCCTTGCCAAAATCTTTGGCATCGTCCCACTGTCCTTGAATGAATGGCTCTTGGTTCTGGCCGTGGCATTGCCCGTGATCATAATCGATGAGATTCTGAAATTCATCGGAAGGCTTACTAGTGGGTTGAGGACTTCTCGCCCGAGCAGATTATCAAAGCAGAAATCGGAGTAA 3297 43.28 MGRGGENYGKKEIFAATTSKKETYPAWAKDVRECVEKYQVNPDLGLSSEEVENKRNIYGYNELEKHEGTSIFKLILEQFNDTLVRILLAAAVVSFVLAWYDGEEGGEMEITAFVEPLVIFLILIINAIVGIWQENNAEKALEALKEIQSEQASVIRNGKRTSIVAKDLVPGDIVELRVGDKVPADMRVLRLISSTFRVEQGSLTGESEAVSKTAKAVPEDTDIQGKKCMVFAGTTVVNGNCICIVTQIGMSTELGQVHSQIQEASQSEDDTPLKKKLNEFGELLTAIIGVICALVWLINVKYFLTWEYVDGLPANFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVAKIVALGSRVGTLRAFDVEGTTYDPLDGKIIGWLGGQLDANLQMLAKIAAVCNDAGVERSGHHFVANGMPTEAALKVRVMFDKLLYVVLWICLLIKTNFVSDAFYLNVKVLVEKMGLPEGYDSSSATVNGDVLRCCQAWNKNEQRIATLEFDRDRKSMGVITNSKSGKKSLLVKGAVEHLLDRSSFIQLLDGTIVNLDSDSKRYLLDCLREMSSSALRCLGFAYKEDPPEFSDYNIGDEDHPAHQLLLDPSKYSTIESNLIFAGFVGLRDPPRKEVHQAIEDCKAAGIRVMVITGDNQNTAEAICREIGVFGQHEAINSRSLTGKEFMAMSREDQKFHLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYDNMKAFIRYMISSNIGEVASIFLTAALGIPEGMIPVQLLWVNLVTDGPPATALGFNPPDSDIMKKPPRKSDDSLITAWILFRYLVIGLYVGLATVGVFIIWYTHGSFLGIDLSGDGHSLVSYSQLANWGQCPSWEGFSVSPFTAGDEVFSFDSDPCDYFRSGKIKASTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAKIFGIVPLSLNEWLLVLAVALPVIIIDEILKFIGRLTSGLRTSRPSRLSKQKSE 1098
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18820589 18826914 + Lsi02G013800.1 Lsi02g01380 656122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01380 1098 ProSitePatterns E1-E2 ATPases phosphorylation site. 382 388 IPR018303 -
Lsi02g01380 1098 Pfam Cation transporting ATPase, C-terminus 851 1077 IPR006068 -
Lsi02g01380 1098 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 1079 IPR023298 -
Lsi02g01380 1098 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 118 307 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g01380 1098 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 740 850 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g01380 1098 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 319 401 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g01380 1098 PANTHER CALCIUM-TRANSPORTING ATPASE 4 1097 - -
Lsi02g01380 1098 Pfam haloacid dehalogenase-like hydrolase 660 780 - -
Lsi02g01380 1098 Pfam Cation transport ATPase (P-type) 444 581 - -
Lsi02g01380 1098 SFLD Haloacid Dehalogenase 361 818 - -
Lsi02g01380 1098 Gene3D - 77 165 - -
Lsi02g01380 1098 PRINTS P-type cation-transporting ATPase superfamily signature 199 213 - -
Lsi02g01380 1098 PRINTS P-type cation-transporting ATPase superfamily signature 380 394 - -
Lsi02g01380 1098 PRINTS P-type cation-transporting ATPase superfamily signature 766 785 - -
Lsi02g01380 1098 PRINTS P-type cation-transporting ATPase superfamily signature 680 690 - -
Lsi02g01380 1098 PRINTS P-type cation-transporting ATPase superfamily signature 658 669 - -
Lsi02g01380 1098 PRINTS P-type cation-transporting ATPase superfamily signature 790 802 - -
Lsi02g01380 1098 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 387 662 IPR023299 GO:0000166
Lsi02g01380 1098 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 4 1097 - -
Lsi02g01380 1098 Gene3D - 775 1083 - -
Lsi02g01380 1098 Gene3D - 208 384 - -
Lsi02g01380 1098 Gene3D - 390 665 IPR023299 GO:0000166
Lsi02g01380 1098 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
Lsi02g01380 1098 Pfam Cation transporter/ATPase, N-terminus 27 94 IPR004014 -
Lsi02g01380 1098 SFLD p-type atpase 361 818 IPR044492 -
Lsi02g01380 1098 Pfam E1-E2 ATPase 147 360 - -
Lsi02g01380 1098 SUPERFAMILY HAD-like 378 870 IPR036412 -
Lsi02g01380 1098 SUPERFAMILY Calcium ATPase, transduction domain A 149 259 IPR008250 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01380 Lsi-Chr2:18820589 Lsi11g00805 Lsi-Chr11:9824443 3.58E-98 dispersed
Lsi11g01354 Lsi-Chr11:22164133 Lsi02g01380 Lsi-Chr2:18820589 2.39E-11 dispersed
Lsi02g01380 Lsi-Chr2:18820589 Lsi08g01538 Lsi-Chr8:23393219 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01380 K01537 - csv:101206729 2003.79