Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g01406 ATGGCTGATGTTGGTCAGAACAACCCCGCTGATTTTCCTGCTCTTTCAAGCCATGGTGGTCAATACGTTCAGTACAATATCTTTGGGAATCCTTTCGAAATCACCTCCAAATATCGTCCCCCTATTATGCCTATAGGTCGCGGCGCATACGGAATCGTTTGTTCTGTTTTGAATTCGGAGACCAATGAGATGGTTGCGGTTAAGAAGATTGCTAACGCGTTTGATAACCATATGGATGCGAAGAGGACGCTACGTGAGATTAAGCTTCTTCGCCATTTGGATCATGAAAATGTAATAGGCATAAGAGATGTGATTCCTCCACCCTTACGGAGAGAATTCAATGATGTTTACATTTCAACTGAACTAATGGATACCGATCTTCACCAAATAATCCGTTCCAACCAAGGTTTATCGGAAGAGCATTGTCAGTATTTCCTTTATCAGATTCTCCGAGGACTGAAATACATACATTCTGCCAATGTCATTCATCGAGACTTGAAACCGAGCAATCTATTGCTTAATGCAAACTGTGATCTTAAAATATGTGATTTTGGTCTTGCTCGACCAACTTCGGAAAATGAAAGTATGACAGAATATGTTGTGACAAGATGGTATAGAGCACCTGAGCTTCTATTGAACTCTGATTATACAGCTGCTATAGATATATGGTCTGTTGGTTGTATCTTTCTGGAGCTTATGAATAGAAGGCCTTTATTTCCAGGCAGGGATCATGTGCATCAGATGCGATTATTGACTGAGCTTCTCGGCACACCATCCGAGTCGGATCTTGGTTTTATTCGAAATGAAGACTCGAAAAGATATCTTCGGCAGCTACCTCCACATCCTCGTCAGCCATTAGCAACGGTTTTCCCACATGTTCATCCGTTGGCAATTGATCTTGTGGATAAAATGTTGACGTTTGACCCAACAAAGAGAATTACTGTTGAAGAAGCGTTGGCACATCCATACCTAGAAAGATTGCATGACATAGCGGATGAGCCGGTTTGCCCAGAGCCATTCTCGTTCGAGTTTGAGCAACAATTCTTAGATGAAGAACAGATGAAGGAAATGATTTACAGAGAGGCATTGGCACTCAATCCAGAATTCGCATGA 1113 41.96 MADVGQNNPADFPALSSHGGQYVQYNIFGNPFEITSKYRPPIMPIGRGAYGIVCSVLNSETNEMVAVKKIANAFDNHMDAKRTLREIKLLRHLDHENVIGIRDVIPPPLRREFNDVYISTELMDTDLHQIIRSNQGLSEEHCQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTSENESMTEYVVTRWYRAPELLLNSDYTAAIDIWSVGCIFLELMNRRPLFPGRDHVHQMRLLTELLGTPSESDLGFIRNEDSKRYLRQLPPHPRQPLATVFPHVHPLAIDLVDKMLTFDPTKRITVEEALAHPYLERLHDIADEPVCPEPFSFEFEQQFLDEEQMKEMIYREALALNPEFA 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19325394 19329203 - Lsi02G014060.1 Lsi02g01406 656148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g01406 370 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524
Lsi02g01406 370 Pfam Protein kinase domain 44 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01406 370 CDD STKc_TEY_MAPK 32 367 - -
Lsi02g01406 370 Gene3D Transferase(Phosphotransferase) domain 1 123 351 - -
Lsi02g01406 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 15 369 - -
Lsi02g01406 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Lsi02g01406 370 Gene3D Phosphorylase Kinase; domain 1 22 361 - -
Lsi02g01406 370 SUPERFAMILY Protein kinase-like (PK-like) 44 331 IPR011009 -
Lsi02g01406 370 ProSitePatterns MAP kinase signature. 74 177 IPR003527 GO:0004707|GO:0005524|GO:0006468
Lsi02g01406 370 SMART serkin_6 39 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g01406 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 15 369 - -
Lsi02g01406 370 ProSiteProfiles Protein kinase domain profile. 39 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01406 Lsi-Chr2:19325394 Lsi08g00877 Lsi-Chr8:17123544 0 dispersed
Lsi09g00576 Lsi-Chr9:6196172 Lsi02g01406 Lsi-Chr2:19325394 1.08E-24 dispersed
Lsi02g01406 Lsi-Chr2:19325394 Lsi02g01409 Lsi-Chr2:19449133 5.17E-165 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83402 PF00069 Pkinase 4.10E-74 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g01406 K20536 - csv:101202796 726.087